BLASTX nr result

ID: Dioscorea21_contig00023037 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00023037
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containi...    78   7e-13
emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]    78   9e-13
ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    76   3e-12
ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containi...    76   3e-12
ref|XP_003605160.1| Pentatricopeptide repeat-containing protein ...    73   2e-11

>ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 35/55 (63%), Positives = 46/55 (83%)
 Frame = +2

Query: 2   ADKVWELMKQKGVEKTPGCSLIEVDGMVHEFIVRDKSHQEGKEIYACLTQLAKQI 166
           A K  +LM+Q+GVEKTPGCS IEV+G+V+EFIVRDKSH + ++IY CL QL +Q+
Sbjct: 562 AGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQL 616


>emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 35/55 (63%), Positives = 46/55 (83%)
 Frame = +2

Query: 2   ADKVWELMKQKGVEKTPGCSLIEVDGMVHEFIVRDKSHQEGKEIYACLTQLAKQI 166
           A K  +LM+Q+GVEKTPGCS IEV+G+V+EFIVRDKSH + ++IY CL QL +Q+
Sbjct: 519 AGKXRKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQL 573


>ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 32/55 (58%), Positives = 48/55 (87%)
 Frame = +2

Query: 2   ADKVWELMKQKGVEKTPGCSLIEVDGMVHEFIVRDKSHQEGKEIYACLTQLAKQI 166
           A KV ++M+++GVEKTPGCS IE++G+V++FI+RDKSH + ++IY CLT+L +QI
Sbjct: 610 ARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLTRQI 664


>ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 32/55 (58%), Positives = 48/55 (87%)
 Frame = +2

Query: 2   ADKVWELMKQKGVEKTPGCSLIEVDGMVHEFIVRDKSHQEGKEIYACLTQLAKQI 166
           A KV ++M+++GVEKTPGCS IE++G+V++FI+RDKSH + ++IY CLT+L +QI
Sbjct: 610 ARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLTRQI 664


>ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355506215|gb|AES87357.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 31/51 (60%), Positives = 41/51 (80%)
 Frame = +2

Query: 17  ELMKQKGVEKTPGCSLIEVDGMVHEFIVRDKSHQEGKEIYACLTQLAKQIN 169
           +LM  KGVEKTPGCSL+E++G+VHEF+VRD SH + + IY CL  L KQ++
Sbjct: 618 KLMNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQSEWIYECLVTLTKQLD 668