BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00023004
         (687 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group]     255   5e-66
gb|ABB47665.1| retrotransposon protein, putative, unclassified, ...   246   2e-63
gb|AAT47108.1| putative polyprotein [Oryza sativa Japonica Group]     222   5e-56
gb|ADB85253.1| putative retrotransposon protein [Phyllostachys e...   198   9e-49
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]               185   6e-45

>gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1419

 Score =  255 bits (652), Expect = 5e-66
 Identities = 133/247 (53%), Positives = 173/247 (70%), Gaps = 19/247 (7%)
 Frame = -3

Query: 685  LLDSGASLHMTPDTTHLHHSRPPSLITRVRTADGTLLPVSSTGHLSSNAFSVPSVSHVPR 506
            +LDSGAS HMTPD + L  S   +  + V+TADGT+LPVS  G L +  +++P V +VP 
Sbjct: 489  ILDSGASFHMTPDISQLQ-SCSLTKASSVQTADGTILPVSLQGTLQTKEYTIPDVFYVPN 547

Query: 505  LSMNLMSVSQLTDYDCQVIFDRTSCRVQDRS-GKVIGAGRRHSG---VYVLDTLHL---S 347
            LSM L+SV QLTD  C V+FD  +C V DR+ G ++GAG R +G   +YVLD LHL   +
Sbjct: 548  LSMKLISVGQLTDMKCHVVFDEAACYVLDRATGNLVGAGHRLNGPRGLYVLDHLHLPTST 607

Query: 346  SSAGPIHHCHATVLSHH------------MWHHRLGHLCPSRMTSLVRLGVLGAVSPSSD 203
            SS  P +   AT ++ +             WHHRLGHLC SR+++LV+ GVLG VS  +D
Sbjct: 608  SSGFPGNSASATSITSNSSVYSSLSASFPQWHHRLGHLCGSRLSTLVQQGVLGNVSIETD 667

Query: 202  VVCVGCKLGKQLQRPYPLSVSQTTAPFELIHSDVWGPAPFVSKGGNRYYVIFIDDYTRFT 23
             VC GCKLGKQ+Q PY  S+S++T+PF L+HSDVWGPAPF SKGG+RYYVIF+DD++R+T
Sbjct: 668  FVCKGCKLGKQVQLPYRSSMSRSTSPFALVHSDVWGPAPFHSKGGHRYYVIFVDDFSRYT 727

Query: 22   WIYFMHH 2
            WIYFM H
Sbjct: 728  WIYFMKH 734


>gb|ABB47665.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group] gi|78708691|gb|ABB47666.1|
           retrotransposon protein, putative, unclassified,
           expressed [Oryza sativa Japonica Group]
          Length = 1682

 Score =  246 bits (629), Expect = 2e-63
 Identities = 130/239 (54%), Positives = 163/239 (68%), Gaps = 11/239 (4%)
 Frame = -3

Query: 685 LLDSGASLHMTPDTTHLHHSRPPSLITRVRTADGTLLPVSSTGHLSSNAFSVPSVSHVPR 506
           +LDSGAS HM+ D + L   R       V TA+GTL  V+  G +SS  F+VP+VS VP+
Sbjct: 185 ILDSGASFHMSFDDSWLTSCRLVKNGATVHTANGTLCKVTHQGSISSPQFTVPNVSLVPK 244

Query: 505 LSMNLMSVSQLTDYDCQVIFDRTSCRVQDR-SGKVIGAGRRHS---GVYVLDTLHLSSSA 338
           LSMNL+SV QLTD +C V FD TSC VQDR +G VIG G R     G+Y+LD+L L SS+
Sbjct: 245 LSMNLISVGQLTDTNCFVGFDDTSCFVQDRHTGAVIGTGHRQKRSCGLYILDSLSLPSSS 304

Query: 337 -------GPIHHCHATVLSHHMWHHRLGHLCPSRMTSLVRLGVLGAVSPSSDVVCVGCKL 179
                   P+  C     S   WHHRLGHLC SR+ +L+  GVLG+V   +  VC GCKL
Sbjct: 305 TNTPSVYSPM--CSTACKSFPQWHHRLGHLCGSRLATLINQGVLGSVPVDTTFVCKGCKL 362

Query: 178 GKQLQRPYPLSVSQTTAPFELIHSDVWGPAPFVSKGGNRYYVIFIDDYTRFTWIYFMHH 2
           GKQ+Q PYP S S+++ PF+L+HSDVWG +PF SKGG+ YYVIF+DDY+R+TWIYFM H
Sbjct: 363 GKQVQLPYPSSTSRSSRPFDLVHSDVWGKSPFPSKGGHNYYVIFVDDYSRYTWIYFMKH 421


>gb|AAT47108.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1204

 Score =  222 bits (566), Expect = 5e-56
 Identities = 117/216 (54%), Positives = 152/216 (70%), Gaps = 7/216 (3%)
 Frame = -3

Query: 628  SRPPSLITRVRTADGTLLPVSSTGHLSSNAFSVPSVSHVPRLSMNLMSVSQLTDYDCQVI 449
            S   S+ T V TADGT L +   G LS ++FSVP+VS+VP+L+M LMS  QLTD+ C+VI
Sbjct: 379  SSSASVPTTVHTADGTPLAIVGRGTLSISSFSVPAVSYVPKLAMQLMSAGQLTDHGCRVI 438

Query: 448  FDRTSCRVQD-RSGKVIGAGRRHSG---VYVLDTLHLSSSAGP--IHHCHATVLSHHMWH 287
             D  SC VQD R+G ++G G R      ++ LD L L S+A    +    ++ +S   WH
Sbjct: 439  LDSDSCCVQDHRTGLLVGTGPRRRDSQRLWELDWLRLPSAAPASLLASTASSTVSFAQWH 498

Query: 286  HRLGHLCPSRMTSLVRLGVLGAVSPSSDV-VCVGCKLGKQLQRPYPLSVSQTTAPFELIH 110
            HRLGHLC SR+++LVR G+LG+VS +  +  C GCKLGKQ+Q PY  S S +  PF+L+H
Sbjct: 499  HRLGHLCGSRLSALVRRGLLGSVSGAVSLNQCQGCKLGKQIQLPYHSSESVSKRPFDLVH 558

Query: 109  SDVWGPAPFVSKGGNRYYVIFIDDYTRFTWIYFMHH 2
            SDVWGPAPFVSKGG+RYY+IFIDD++R TWIYFM H
Sbjct: 559  SDVWGPAPFVSKGGHRYYIIFIDDFSRHTWIYFMTH 594


>gb|ADB85253.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 861

 Score =  198 bits (503), Expect = 9e-49
 Identities = 108/198 (54%), Positives = 133/198 (67%), Gaps = 10/198 (5%)
 Frame = -3

Query: 577 LPVSSTGHLSSNAFSVPSVSHVPRLSMNLMSVSQLTDYDCQVIFDRTSCRVQDR-SGKVI 401
           L +SS G  S    S P+VSHVP+L+M L+SV QLTD  C+V FD  +  VQDR +G  +
Sbjct: 287 LSLSSAGSTSLAQTSPPAVSHVPQLTMQLLSVGQLTDLGCRVGFDSHTYFVQDRQTGTSL 346

Query: 400 GAGRRH---SGVYVLDTLHL-SSSAGPIHHCH-----ATVLSHHMWHHRLGHLCPSRMTS 248
           G GRR     G+Y+LD LHL S+S  PI         AT      WHHRLGHLC S ++S
Sbjct: 347 GTGRRRRDRQGLYILDRLHLPSASVAPITSTSTATAAATSGVFAQWHHRLGHLCGSCLSS 406

Query: 247 LVRLGVLGAVSPSSDVVCVGCKLGKQLQRPYPLSVSQTTAPFELIHSDVWGPAPFVSKGG 68
           LVR GVLG V   + + C GCKLGK LQ PY  S S ++ PF+L+HSDVWGPAP +SKGG
Sbjct: 407 LVRQGVLGRVPVDTSMFCQGCKLGKWLQLPYHSSESLSSRPFDLVHSDVWGPAPIISKGG 466

Query: 67  NRYYVIFIDDYTRFTWIY 14
           ++ YVIFIDDY+RFTWI+
Sbjct: 467 HKSYVIFIDDYSRFTWIF 484


>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
          Length = 1382

 Score =  185 bits (470), Expect = 6e-45
 Identities = 104/241 (43%), Positives = 145/241 (60%), Gaps = 13/241 (5%)
 Frame = -3

Query: 685  LLDSGASLHMTPDTTHLHHSRPPSLITRVRTADGTLLPVSSTGHLSSNAFSVPSVSHVPR 506
            +LDSGAS HM+PD++      P S I  V TADGT +P++  G + +   S+P+V  +P+
Sbjct: 343  VLDSGASHHMSPDSSSFTSVSPLSSIP-VMTADGTPMPLAGVGSVVTLHLSLPNVYLIPK 401

Query: 505  LSMNLMSVSQLTDY-DCQVIFDRTSCRVQD-RSGKVIGAGRRHSGVYVLDTLHLSSSAGP 332
            L +NL S+ Q+ D  D  V+F  + C VQD +S K+IG GRR +G+Y+LD L +     P
Sbjct: 402  LKLNLASIGQICDSGDYLVMFSGSFCCVQDLQSQKLIGTGRRENGLYILDELKV-----P 456

Query: 331  IHHCHATV-----------LSHHMWHHRLGHLCPSRMTSLVRLGVLGAVSPSSDVVCVGC 185
            +     TV            S ++WH RLGH+  SR+  L   G LG +       C GC
Sbjct: 457  VVVAATTVDLSFFRLSLSSSSFYLWHSRLGHVSSSRLRFLASTGALGNLKTCDISDCSGC 516

Query: 184  KLGKQLQRPYPLSVSQTTAPFELIHSDVWGPAPFVSKGGNRYYVIFIDDYTRFTWIYFMH 5
            KL K    P+  S S +++PF+LIHSDVWGP+P  +KGG+RYYV FIDD+TR+ W+Y M 
Sbjct: 517  KLAKFSALPFNRSTSVSSSPFDLIHSDVWGPSPVSTKGGSRYYVSFIDDHTRYCWVYLMK 576

Query: 4    H 2
            H
Sbjct: 577  H 577