BLASTX nr result

ID: Dioscorea21_contig00019841 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00019841
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ86954.1| predicted protein [Hordeum vulgare subsp. vulgare]    130   1e-28
ref|XP_003567582.1| PREDICTED: probable ATP-dependent RNA helica...   130   1e-28
ref|XP_002457482.1| hypothetical protein SORBIDRAFT_03g008040 [S...   129   2e-28
tpg|DAA53732.1| TPA: hypothetical protein ZEAMMB73_195625 [Zea m...   128   5e-28
tpg|DAA53731.1| TPA: hypothetical protein ZEAMMB73_195625 [Zea m...   128   5e-28

>dbj|BAJ86954.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1247

 Score =  130 bits (327), Expect = 1e-28
 Identities = 71/135 (52%), Positives = 86/135 (63%), Gaps = 15/135 (11%)
 Frame = +2

Query: 26  DWR-DGRGVSVE-------------PPMAPSGNGYFRQQRSPYSRYAFEXXXXXXXXXXX 163
           DWR DGR +S               PP  P      RQQ + YSRYA++           
Sbjct: 91  DWRADGRSLSPPSPPQPQQRRAAQLPPRPPPQTQPLRQQSAGYSRYAYDDFSEEDSDREM 150

Query: 164 XXXXXXGKG-ASTLDNVDEWKWKLSMLLRNQHEQEVVSREKKDRRDYEQLAALAERMGLH 340
                  KG ASTL+NVDEWKWKL MLLRN +EQE++SREKKDRRD++QLA LA+RMGLH
Sbjct: 151 DRTSVSSKGGASTLENVDEWKWKLHMLLRNDNEQEIMSREKKDRRDFDQLAQLADRMGLH 210

Query: 341 SRQYAKVVVFSKVPL 385
           SRQY++++VFSKVPL
Sbjct: 211 SRQYSRIIVFSKVPL 225


>ref|XP_003567582.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like
           [Brachypodium distachyon]
          Length = 1247

 Score =  130 bits (326), Expect = 1e-28
 Identities = 64/115 (55%), Positives = 77/115 (66%)
 Frame = +2

Query: 41  RGVSVEPPMAPSGNGYFRQQRSPYSRYAFEXXXXXXXXXXXXXXXXXGKGASTLDNVDEW 220
           R   + P   P      RQQ + Y+RYA++                  KGASTLDNVDEW
Sbjct: 118 RAAPLPPRPPPPQQPPLRQQSAGYARYAYDDFSEDESDREMDRSSASSKGASTLDNVDEW 177

Query: 221 KWKLSMLLRNQHEQEVVSREKKDRRDYEQLAALAERMGLHSRQYAKVVVFSKVPL 385
           KWKL MLLRN  EQE++SREKKDRRD+EQLA LA+RM LHSRQY++++VFSKVPL
Sbjct: 178 KWKLHMLLRNDDEQEIISREKKDRRDFEQLAQLADRMALHSRQYSRIIVFSKVPL 232


>ref|XP_002457482.1| hypothetical protein SORBIDRAFT_03g008040 [Sorghum bicolor]
           gi|241929457|gb|EES02602.1| hypothetical protein
           SORBIDRAFT_03g008040 [Sorghum bicolor]
          Length = 1390

 Score =  129 bits (325), Expect = 2e-28
 Identities = 66/110 (60%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
 Frame = +2

Query: 59  PPMA-PSGNGYFRQQRSPYSRYAFEXXXXXXXXXXXXXXXXXGKGASTLDNVDEWKWKLS 235
           PP+  P    +FRQQ + Y+RYA++                  KGASTLDNVDEWKWKL 
Sbjct: 272 PPLPRPPQPEHFRQQSAGYARYAYDDFSEDDSDKDMDRTSVSSKGASTLDNVDEWKWKLH 331

Query: 236 MLLRNQHEQEVVSREKKDRRDYEQLAALAERMGLHSRQYAKVVVFSKVPL 385
           MLLRN  EQE++SRE+KDRRD+EQLA LAERM LHSRQY+KVVVFSKV +
Sbjct: 332 MLLRNDDEQEIISRERKDRRDFEQLAQLAERMRLHSRQYSKVVVFSKVSI 381


>tpg|DAA53732.1| TPA: hypothetical protein ZEAMMB73_195625 [Zea mays]
          Length = 1381

 Score =  128 bits (321), Expect = 5e-28
 Identities = 68/128 (53%), Positives = 85/128 (66%), Gaps = 11/128 (8%)
 Frame = +2

Query: 35  DGRGVSVE----------PPMA-PSGNGYFRQQRSPYSRYAFEXXXXXXXXXXXXXXXXX 181
           DGR +S +          PP+  P    ++RQQ + ++RYA++                 
Sbjct: 239 DGRSLSPQSPPQLRRRDIPPLPRPPLPEHYRQQSAGFARYAYDDFSEDDSDKDIDRTSVS 298

Query: 182 GKGASTLDNVDEWKWKLSMLLRNQHEQEVVSREKKDRRDYEQLAALAERMGLHSRQYAKV 361
            KGASTLDNVDEWKWKL MLLRN  EQE++SRE+KDRRD+EQLA LA+RM LHSRQY++V
Sbjct: 299 SKGASTLDNVDEWKWKLHMLLRNDDEQEIISRERKDRRDFEQLAQLADRMRLHSRQYSRV 358

Query: 362 VVFSKVPL 385
           VVFSKVPL
Sbjct: 359 VVFSKVPL 366


>tpg|DAA53731.1| TPA: hypothetical protein ZEAMMB73_195625 [Zea mays]
          Length = 1125

 Score =  128 bits (321), Expect = 5e-28
 Identities = 68/128 (53%), Positives = 85/128 (66%), Gaps = 11/128 (8%)
 Frame = +2

Query: 35  DGRGVSVE----------PPMA-PSGNGYFRQQRSPYSRYAFEXXXXXXXXXXXXXXXXX 181
           DGR +S +          PP+  P    ++RQQ + ++RYA++                 
Sbjct: 239 DGRSLSPQSPPQLRRRDIPPLPRPPLPEHYRQQSAGFARYAYDDFSEDDSDKDIDRTSVS 298

Query: 182 GKGASTLDNVDEWKWKLSMLLRNQHEQEVVSREKKDRRDYEQLAALAERMGLHSRQYAKV 361
            KGASTLDNVDEWKWKL MLLRN  EQE++SRE+KDRRD+EQLA LA+RM LHSRQY++V
Sbjct: 299 SKGASTLDNVDEWKWKLHMLLRNDDEQEIISRERKDRRDFEQLAQLADRMRLHSRQYSRV 358

Query: 362 VVFSKVPL 385
           VVFSKVPL
Sbjct: 359 VVFSKVPL 366


Top