BLASTX nr result

ID: Dioscorea21_contig00017358 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00017358
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABL63118.1| AT-hook DNA-binding protein [Catharanthus roseus]      141   6e-32
ref|NP_001146992.1| DNA binding protein [Zea mays] gi|195606236|...   140   1e-31
ref|NP_001046754.1| Os02g0448000 [Oryza sativa Japonica Group] g...   139   2e-31
ref|XP_002299584.1| predicted protein [Populus trichocarpa] gi|2...   139   3e-31
ref|XP_002451872.1| hypothetical protein SORBIDRAFT_04g009050 [S...   138   4e-31

>gb|ABL63118.1| AT-hook DNA-binding protein [Catharanthus roseus]
          Length = 293

 Score =  141 bits (355), Expect = 6e-32
 Identities = 72/91 (79%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
 Frame = -2

Query: 272 TGEG-DAYHEYEEGDSTRRARGRPAGSKNKPKPPIIISRDSANVLRTHVMEIAGGCDIGE 96
           +G+G D   +   G+ TRR RGRPAGSKNKPKPPIII+RDSAN LRTHVMEIA GCDI E
Sbjct: 47  SGDGKDGGGDPGSGEMTRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIME 106

Query: 95  SVANFARRRQRGVCILSGSGTVTNVTLRQPA 3
           SVA FARRRQRGVCI+SGSGTVTNVTLRQPA
Sbjct: 107 SVATFARRRQRGVCIMSGSGTVTNVTLRQPA 137


>ref|NP_001146992.1| DNA binding protein [Zea mays] gi|195606236|gb|ACG24948.1| DNA
           binding protein [Zea mays] gi|413925983|gb|AFW65915.1|
           DNA binding protein [Zea mays]
          Length = 320

 Score =  140 bits (352), Expect = 1e-31
 Identities = 69/81 (85%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
 Frame = -2

Query: 242 EEGDST-RRARGRPAGSKNKPKPPIIISRDSANVLRTHVMEIAGGCDIGESVANFARRRQ 66
           E GD+T RR RGRPAGSKNKPKPPIII+RDSAN LRTHVME+AGGCDI ESV  FARRRQ
Sbjct: 94  EGGDATPRRPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESVTAFARRRQ 153

Query: 65  RGVCILSGSGTVTNVTLRQPA 3
           RGVC+LSG+GTVTNVTLRQPA
Sbjct: 154 RGVCVLSGAGTVTNVTLRQPA 174


>ref|NP_001046754.1| Os02g0448000 [Oryza sativa Japonica Group]
           gi|50252749|dbj|BAD28974.1| putative DNA-binding protein
           AT-hook 2 [Oryza sativa Japonica Group]
           gi|113536285|dbj|BAF08668.1| Os02g0448000 [Oryza sativa
           Japonica Group] gi|125539298|gb|EAY85693.1| hypothetical
           protein OsI_07061 [Oryza sativa Indica Group]
           gi|125581960|gb|EAZ22891.1| hypothetical protein
           OsJ_06576 [Oryza sativa Japonica Group]
          Length = 316

 Score =  139 bits (350), Expect = 2e-31
 Identities = 65/76 (85%), Positives = 71/76 (93%)
 Frame = -2

Query: 230 STRRARGRPAGSKNKPKPPIIISRDSANVLRTHVMEIAGGCDIGESVANFARRRQRGVCI 51
           +TRR RGRPAGSKNKPKPPIII+RDSAN LRTHVME+AGGCDI ES+  FARRRQRGVC+
Sbjct: 95  ATRRPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCV 154

Query: 50  LSGSGTVTNVTLRQPA 3
           LSG+GTVTNVTLRQPA
Sbjct: 155 LSGAGTVTNVTLRQPA 170


>ref|XP_002299584.1| predicted protein [Populus trichocarpa] gi|222846842|gb|EEE84389.1|
           predicted protein [Populus trichocarpa]
          Length = 302

 Score =  139 bits (349), Expect = 3e-31
 Identities = 69/90 (76%), Positives = 77/90 (85%)
 Frame = -2

Query: 272 TGEGDAYHEYEEGDSTRRARGRPAGSKNKPKPPIIISRDSANVLRTHVMEIAGGCDIGES 93
           +G+GD       G+ TRR RGRPAGSKNKPKPPIII+RDSAN LRTH+ME+A GCDI ES
Sbjct: 77  SGDGD-------GEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHLMEVADGCDIVES 129

Query: 92  VANFARRRQRGVCILSGSGTVTNVTLRQPA 3
           VA FARRRQRGVCI+SG+GTVTNVTLRQPA
Sbjct: 130 VATFARRRQRGVCIMSGTGTVTNVTLRQPA 159


>ref|XP_002451872.1| hypothetical protein SORBIDRAFT_04g009050 [Sorghum bicolor]
           gi|241931703|gb|EES04848.1| hypothetical protein
           SORBIDRAFT_04g009050 [Sorghum bicolor]
          Length = 327

 Score =  138 bits (348), Expect = 4e-31
 Identities = 73/105 (69%), Positives = 79/105 (75%), Gaps = 10/105 (9%)
 Frame = -2

Query: 287 GTGTGTGEGDAYHEYEE---------GDST-RRARGRPAGSKNKPKPPIIISRDSANVLR 138
           G+G G G GD                GD T RR RGRPAGSKNKPKPPIII+RDSAN LR
Sbjct: 76  GSGGGGGGGDELALIPTSGGGGPDGGGDGTPRRPRGRPAGSKNKPKPPIIITRDSANTLR 135

Query: 137 THVMEIAGGCDIGESVANFARRRQRGVCILSGSGTVTNVTLRQPA 3
           THVME+AGGCDI ES+  FARRRQRGVC+LSG+GTVTNVTLRQPA
Sbjct: 136 THVMEVAGGCDISESITAFARRRQRGVCVLSGAGTVTNVTLRQPA 180


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