BLASTX nr result

ID: Dioscorea21_contig00017004 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00017004
         (361 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515058.1| copine, putative [Ricinus communis] gi|22354...   124   1e-26
ref|XP_002315654.1| predicted protein [Populus trichocarpa] gi|2...   117   1e-24
ref|XP_002282202.2| PREDICTED: E3 ubiquitin-protein ligase RGLG2...   115   4e-24
ref|XP_003564886.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2...   113   1e-23
ref|XP_002458953.1| hypothetical protein SORBIDRAFT_03g043290 [S...   112   2e-23

>ref|XP_002515058.1| copine, putative [Ricinus communis] gi|223546109|gb|EEF47612.1|
           copine, putative [Ricinus communis]
          Length = 478

 Score =  124 bits (310), Expect = 1e-26
 Identities = 65/105 (61%), Positives = 74/105 (70%), Gaps = 14/105 (13%)
 Frame = -3

Query: 347 KSSSFQQTGPSYSGYDTT-PS------SAPLYSG-------YDTKPSMAQHASNSLSDNL 210
           +SSSFQQ  PSYSGYD + PS      S P YSG       YDT  +   HAS++  DN 
Sbjct: 375 QSSSFQQRAPSYSGYDASGPSYSGYDGSVPSYSGQDTVVAGYDTPVNTNPHASSTY-DNQ 433

Query: 209 VCPICLTDPKDMAFGCGHQTCCECGQTLESCPICRSPIVTRIKLY 75
           VCPICLT+ KDMAFGCGHQTCCECG+ L+ CPICRSPI TRI+LY
Sbjct: 434 VCPICLTNRKDMAFGCGHQTCCECGEDLQLCPICRSPIQTRIRLY 478


>ref|XP_002315654.1| predicted protein [Populus trichocarpa] gi|222864694|gb|EEF01825.1|
           predicted protein [Populus trichocarpa]
          Length = 403

 Score =  117 bits (293), Expect = 1e-24
 Identities = 58/95 (61%), Positives = 67/95 (70%)
 Frame = -3

Query: 359 SRTFKSSSFQQTGPSYSGYDTTPSSAPLYSGYDTKPSMAQHASNSLSDNLVCPICLTDPK 180
           S   +SSSFQ+  PSYSGYDT        SGY+T    A   S S+ DN VC ICLT+PK
Sbjct: 316 SNASRSSSFQRRVPSYSGYDTP------VSGYETASGKAPSPS-SVYDNQVCVICLTNPK 368

Query: 179 DMAFGCGHQTCCECGQTLESCPICRSPIVTRIKLY 75
           DMAFGCGHQTCC+CG+ L+ CPICR PI TRI+LY
Sbjct: 369 DMAFGCGHQTCCDCGEDLQLCPICRRPIQTRIRLY 403


>ref|XP_002282202.2| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Vitis vinifera]
           gi|296081383|emb|CBI16816.3| unnamed protein product
           [Vitis vinifera]
          Length = 442

 Score =  115 bits (288), Expect = 4e-24
 Identities = 55/95 (57%), Positives = 65/95 (68%)
 Frame = -3

Query: 359 SRTFKSSSFQQTGPSYSGYDTTPSSAPLYSGYDTKPSMAQHASNSLSDNLVCPICLTDPK 180
           S+ + S+SFQ++  SY  Y+   S+ P              +SNSL DN VCPICL++PK
Sbjct: 361 SKPYHSNSFQKSAESYPEYEAAVSTGP--------------SSNSLYDNKVCPICLSNPK 406

Query: 179 DMAFGCGHQTCCECGQTLESCPICRSPIVTRIKLY 75
           DMAFGCGHQTCCECG  L SCPICRSPI TRIKLY
Sbjct: 407 DMAFGCGHQTCCECGVDLNSCPICRSPIQTRIKLY 441


>ref|XP_003564886.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Brachypodium
           distachyon]
          Length = 464

 Score =  113 bits (283), Expect = 1e-23
 Identities = 55/93 (59%), Positives = 66/93 (70%)
 Frame = -3

Query: 353 TFKSSSFQQTGPSYSGYDTTPSSAPLYSGYDTKPSMAQHASNSLSDNLVCPICLTDPKDM 174
           ++ S SF +  PSY    T+ SS   Y  Y+T  +    A +S  DN VCPICL +PKDM
Sbjct: 377 SYGSKSFSK--PSYPQSSTSSSS---YPPYETAQTATPAAPSSAYDNQVCPICLVNPKDM 431

Query: 173 AFGCGHQTCCECGQTLESCPICRSPIVTRIKLY 75
           AFGCGHQTCC+CGQTL+SCPICR+PI TRIKLY
Sbjct: 432 AFGCGHQTCCDCGQTLQSCPICRTPISTRIKLY 464


>ref|XP_002458953.1| hypothetical protein SORBIDRAFT_03g043290 [Sorghum bicolor]
           gi|241930928|gb|EES04073.1| hypothetical protein
           SORBIDRAFT_03g043290 [Sorghum bicolor]
          Length = 459

 Score =  112 bits (281), Expect = 2e-23
 Identities = 53/93 (56%), Positives = 65/93 (69%)
 Frame = -3

Query: 353 TFKSSSFQQTGPSYSGYDTTPSSAPLYSGYDTKPSMAQHASNSLSDNLVCPICLTDPKDM 174
           ++ S SF +     + Y  + SSA  Y  Y+T  +    A +S  DN VCPICL +PKDM
Sbjct: 371 SYSSKSFSKP----TTYPQSSSSASPYPHYETPHTATPVAPSSTYDNQVCPICLVNPKDM 426

Query: 173 AFGCGHQTCCECGQTLESCPICRSPIVTRIKLY 75
           AFGCGHQTCC+CGQ+LESCPICR+PI TRIKLY
Sbjct: 427 AFGCGHQTCCDCGQSLESCPICRTPITTRIKLY 459


Top