BLASTX nr result

ID: Dioscorea21_contig00016306 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00016306
         (446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containi...    97   2e-18
emb|CBI28420.3| unnamed protein product [Vitis vinifera]               97   2e-18
emb|CBI29005.3| unnamed protein product [Vitis vinifera]               92   3e-17
ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containi...    92   6e-17
ref|XP_002308572.1| predicted protein [Populus trichocarpa] gi|2...    92   6e-17

>ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 39/49 (79%), Positives = 45/49 (91%)
 Frame = -2

Query: 445 RIVKNLRVCNDCHNVTKLISRIYDREIVVRDNSRFHHFSNGKCSCMDFW 299
           RI+KNLRVCNDCH+VTKL+S+IY REI+VRDN RFHHF NG CSCMD+W
Sbjct: 631 RIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679


>emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 39/49 (79%), Positives = 45/49 (91%)
 Frame = -2

Query: 445 RIVKNLRVCNDCHNVTKLISRIYDREIVVRDNSRFHHFSNGKCSCMDFW 299
           RI+KNLRVCNDCH+VTKL+S+IY REI+VRDN RFHHF NG CSCMD+W
Sbjct: 583 RIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631


>emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 37/49 (75%), Positives = 45/49 (91%)
 Frame = -2

Query: 445 RIVKNLRVCNDCHNVTKLISRIYDREIVVRDNSRFHHFSNGKCSCMDFW 299
           RIVKNLRVC DCH+VTKLIS++Y REI+VRD +RFHHF +G+CSC+DFW
Sbjct: 539 RIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 587


>ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449511814|ref|XP_004164061.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 36/49 (73%), Positives = 43/49 (87%)
 Frame = -2

Query: 445 RIVKNLRVCNDCHNVTKLISRIYDREIVVRDNSRFHHFSNGKCSCMDFW 299
           RI+KNLR+CNDCH VTKL+S IY+REI++RD SRFHHF +G CSC DFW
Sbjct: 633 RIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681


>ref|XP_002308572.1| predicted protein [Populus trichocarpa] gi|222854548|gb|EEE92095.1|
           predicted protein [Populus trichocarpa]
          Length = 433

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 37/49 (75%), Positives = 44/49 (89%)
 Frame = -2

Query: 445 RIVKNLRVCNDCHNVTKLISRIYDREIVVRDNSRFHHFSNGKCSCMDFW 299
           RIVKNLRVC DCH VTK+ISR+++REI+VRD SRFHHF  GKCSC+D+W
Sbjct: 385 RIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFHHFKEGKCSCLDYW 433


Top