BLASTX nr result
ID: Dioscorea21_contig00016093
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00016093
(913 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001784863.1| predicted protein [Physcomitrella patens sub... 293 5e-77
ref|XP_001755545.1| predicted protein [Physcomitrella patens sub... 292 8e-77
gb|EEE58940.1| hypothetical protein OsJ_10612 [Oryza sativa Japo... 288 2e-75
ref|NP_001049931.1| Os03g0314100 [Oryza sativa Japonica Group] g... 288 2e-75
gb|ABF95605.1| Pre-mRNA splicing factor ATP-dependent RNA helica... 288 2e-75
>ref|XP_001784863.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663569|gb|EDQ50326.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 717
Score = 293 bits (749), Expect = 5e-77
Identities = 153/290 (52%), Positives = 201/290 (69%), Gaps = 1/290 (0%)
Frame = +3
Query: 3 YSVLFEECSGPKTTLKYLTDGMXXXXXXXXXXXESYGVIVLDEAHLRTLATDILLGYLKR 182
YS+ FE+CSGPKTTLKYLTDGM E Y VI+LDEAH RTLATD+L G LK
Sbjct: 137 YSIRFEDCSGPKTTLKYLTDGMLLREAMTDPLLERYRVIILDEAHERTLATDVLFGLLKE 196
Query: 183 LIERNSQPDLKLVIMSTQQEVKWFKDYFKGAKIVQLQGSLNPVEIIHTSKPIGDYLEAAI 362
+++ ++PDLKLV+MS E + F+ YF GA ++++ G L+PVEI +T +P DYLEAAI
Sbjct: 197 VLK--NRPDLKLVVMSATLEAEKFQAYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAI 254
Query: 363 EKVLEILTSEPNGDVLVFLPGGDDIEIGSSRLTGLLKDRTNEFGPVRVLPLHSTLSIEQQ 542
V++I EP GD+LVFL G ++IE ++ +++ ++ GPV+ +PL+STL Q
Sbjct: 255 RTVVQIHICEPPGDILVFLTGEEEIEDACKKIGREVQNLGDQVGPVKAVPLYSTLPPAMQ 314
Query: 543 KKIFKAAPPSTRKGGPVGRKVIMSTDIAESSLAIDGIAYVIDSGFSKQKVYNAGLHAESL 722
+KIF AAPP ++GGP GRK+++ST+IAE+SL IDGI YVID GF+KQKVYN + ESL
Sbjct: 315 QKIFDAAPPPAKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESL 374
Query: 723 LVLPISRASAHXXXXXXXXXXXXKCYRLYTKK-FLEACQPHASPEILRAN 869
LV PIS+ASAH KC+RLYT+K F QP PEILR+N
Sbjct: 375 LVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFQNDLQPQTYPEILRSN 424
>ref|XP_001755545.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168005698|ref|XP_001755547.1| predicted protein
[Physcomitrella patens subsp. patens]
gi|162693252|gb|EDQ79605.1| predicted protein
[Physcomitrella patens subsp. patens]
gi|162693254|gb|EDQ79607.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 715
Score = 292 bits (747), Expect = 8e-77
Identities = 153/290 (52%), Positives = 200/290 (68%), Gaps = 1/290 (0%)
Frame = +3
Query: 3 YSVLFEECSGPKTTLKYLTDGMXXXXXXXXXXXESYGVIVLDEAHLRTLATDILLGYLKR 182
YS+ FE+CSGPKTTLKYLTDGM E Y VI+LDEAH RTLATD+L G LK
Sbjct: 135 YSIRFEDCSGPKTTLKYLTDGMLLREAMTDPLLERYRVIILDEAHERTLATDVLFGLLKE 194
Query: 183 LIERNSQPDLKLVIMSTQQEVKWFKDYFKGAKIVQLQGSLNPVEIIHTSKPIGDYLEAAI 362
+++ ++PDLKLV+MS E + F+ YF GA ++++ G L+PVEI +T +P DYLEAAI
Sbjct: 195 VLK--NRPDLKLVVMSATLEAEKFQAYFNGAPLMKVPGRLHPVEIFYTQEPERDYLEAAI 252
Query: 363 EKVLEILTSEPNGDVLVFLPGGDDIEIGSSRLTGLLKDRTNEFGPVRVLPLHSTLSIEQQ 542
V++I EP GD+LVFL G ++IE ++ +++ ++ GPV+ +PL+STL Q
Sbjct: 253 RTVVQIHICEPAGDILVFLTGEEEIEDACKKIGREVQNLGDQVGPVKAVPLYSTLPPAMQ 312
Query: 543 KKIFKAAPPSTRKGGPVGRKVIMSTDIAESSLAIDGIAYVIDSGFSKQKVYNAGLHAESL 722
+KIF AAPP + GGP GRK+++ST+IAE+SL IDGI YVID GF+KQKVYN + ESL
Sbjct: 313 QKIFDAAPPPAKDGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESL 372
Query: 723 LVLPISRASAHXXXXXXXXXXXXKCYRLYTKK-FLEACQPHASPEILRAN 869
LV PIS+ASAH KC+RLYT+K F QP PEILR+N
Sbjct: 373 LVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFQNDLQPQTYPEILRSN 422
>gb|EEE58940.1| hypothetical protein OsJ_10612 [Oryza sativa Japonica Group]
Length = 707
Score = 288 bits (736), Expect = 2e-75
Identities = 152/290 (52%), Positives = 199/290 (68%), Gaps = 1/290 (0%)
Frame = +3
Query: 3 YSVLFEECSGPKTTLKYLTDGMXXXXXXXXXXXESYGVIVLDEAHLRTLATDILLGYLKR 182
YS+ FE+CS KT LKYLTDGM E Y VIVLDEAH RTLATD+L G LK
Sbjct: 130 YSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERYKVIVLDEAHERTLATDVLFGLLKE 189
Query: 183 LIERNSQPDLKLVIMSTQQEVKWFKDYFKGAKIVQLQGSLNPVEIIHTSKPIGDYLEAAI 362
+++ ++PDLKLV+MS E + F+ YF GA ++++ G L+PVEI +T +P DYLEAAI
Sbjct: 190 VLK--NRPDLKLVVMSATLEAEKFQTYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAI 247
Query: 363 EKVLEILTSEPNGDVLVFLPGGDDIEIGSSRLTGLLKDRTNEFGPVRVLPLHSTLSIEQQ 542
V++I EP GD+LVFL G ++IE ++ + + ++ GPV+V+PL+STL Q
Sbjct: 248 RTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINNMGDQVGPVKVVPLYSTLPPAMQ 307
Query: 543 KKIFKAAPPSTRKGGPVGRKVIMSTDIAESSLAIDGIAYVIDSGFSKQKVYNAGLHAESL 722
+KIF+ AP +R+GGP GRK+++ST+IAE+SL IDGI YVID GFSKQKVYN + ESL
Sbjct: 308 QKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESL 367
Query: 723 LVLPISRASAHXXXXXXXXXXXXKCYRLYTKK-FLEACQPHASPEILRAN 869
LV PIS+ASAH KC+RLYT+K F + QP PEILR+N
Sbjct: 368 LVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNDDLQPQTYPEILRSN 417
>ref|NP_001049931.1| Os03g0314100 [Oryza sativa Japonica Group]
gi|108707809|gb|ABF95604.1| Pre-mRNA splicing factor
ATP-dependent RNA helicase, putative, expressed [Oryza
sativa Japonica Group] gi|113548402|dbj|BAF11845.1|
Os03g0314100 [Oryza sativa Japonica Group]
gi|215694063|dbj|BAG89262.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 564
Score = 288 bits (736), Expect = 2e-75
Identities = 152/290 (52%), Positives = 199/290 (68%), Gaps = 1/290 (0%)
Frame = +3
Query: 3 YSVLFEECSGPKTTLKYLTDGMXXXXXXXXXXXESYGVIVLDEAHLRTLATDILLGYLKR 182
YS+ FE+CS KT LKYLTDGM E Y VIVLDEAH RTLATD+L G LK
Sbjct: 145 YSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERYKVIVLDEAHERTLATDVLFGLLKE 204
Query: 183 LIERNSQPDLKLVIMSTQQEVKWFKDYFKGAKIVQLQGSLNPVEIIHTSKPIGDYLEAAI 362
+++ ++PDLKLV+MS E + F+ YF GA ++++ G L+PVEI +T +P DYLEAAI
Sbjct: 205 VLK--NRPDLKLVVMSATLEAEKFQTYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAI 262
Query: 363 EKVLEILTSEPNGDVLVFLPGGDDIEIGSSRLTGLLKDRTNEFGPVRVLPLHSTLSIEQQ 542
V++I EP GD+LVFL G ++IE ++ + + ++ GPV+V+PL+STL Q
Sbjct: 263 RTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINNMGDQVGPVKVVPLYSTLPPAMQ 322
Query: 543 KKIFKAAPPSTRKGGPVGRKVIMSTDIAESSLAIDGIAYVIDSGFSKQKVYNAGLHAESL 722
+KIF+ AP +R+GGP GRK+++ST+IAE+SL IDGI YVID GFSKQKVYN + ESL
Sbjct: 323 QKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESL 382
Query: 723 LVLPISRASAHXXXXXXXXXXXXKCYRLYTKK-FLEACQPHASPEILRAN 869
LV PIS+ASAH KC+RLYT+K F + QP PEILR+N
Sbjct: 383 LVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNDDLQPQTYPEILRSN 432
>gb|ABF95605.1| Pre-mRNA splicing factor ATP-dependent RNA helicase, putative,
expressed [Oryza sativa Japonica Group]
Length = 722
Score = 288 bits (736), Expect = 2e-75
Identities = 152/290 (52%), Positives = 199/290 (68%), Gaps = 1/290 (0%)
Frame = +3
Query: 3 YSVLFEECSGPKTTLKYLTDGMXXXXXXXXXXXESYGVIVLDEAHLRTLATDILLGYLKR 182
YS+ FE+CS KT LKYLTDGM E Y VIVLDEAH RTLATD+L G LK
Sbjct: 145 YSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERYKVIVLDEAHERTLATDVLFGLLKE 204
Query: 183 LIERNSQPDLKLVIMSTQQEVKWFKDYFKGAKIVQLQGSLNPVEIIHTSKPIGDYLEAAI 362
+++ ++PDLKLV+MS E + F+ YF GA ++++ G L+PVEI +T +P DYLEAAI
Sbjct: 205 VLK--NRPDLKLVVMSATLEAEKFQTYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAI 262
Query: 363 EKVLEILTSEPNGDVLVFLPGGDDIEIGSSRLTGLLKDRTNEFGPVRVLPLHSTLSIEQQ 542
V++I EP GD+LVFL G ++IE ++ + + ++ GPV+V+PL+STL Q
Sbjct: 263 RTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINNMGDQVGPVKVVPLYSTLPPAMQ 322
Query: 543 KKIFKAAPPSTRKGGPVGRKVIMSTDIAESSLAIDGIAYVIDSGFSKQKVYNAGLHAESL 722
+KIF+ AP +R+GGP GRK+++ST+IAE+SL IDGI YVID GFSKQKVYN + ESL
Sbjct: 323 QKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESL 382
Query: 723 LVLPISRASAHXXXXXXXXXXXXKCYRLYTKK-FLEACQPHASPEILRAN 869
LV PIS+ASAH KC+RLYT+K F + QP PEILR+N
Sbjct: 383 LVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNDDLQPQTYPEILRSN 432