BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00015497
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306200.1| predicted protein [Populus trichocarpa] gi|2...   121   7e-26
ref|XP_002521253.1| pentatricopeptide repeat-containing protein,...   114   8e-24
ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containi...   111   5e-23
ref|NP_195239.1| pentatricopeptide repeat-containing protein [Ar...   111   7e-23
ref|XP_002867090.1| pentatricopeptide repeat-containing protein ...   110   9e-23

>ref|XP_002306200.1| predicted protein [Populus trichocarpa] gi|222849164|gb|EEE86711.1|
           predicted protein [Populus trichocarpa]
          Length = 784

 Score =  121 bits (303), Expect = 7e-26
 Identities = 56/107 (52%), Positives = 77/107 (71%), Gaps = 5/107 (4%)
 Frame = -2

Query: 308 DAVTLVNLLPCCANNG-----KEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLF 144
           D +T++NLLP C+ +G     K IHG AIR+ FLP+LVLETAL+DMY +CG L+ AE +F
Sbjct: 310 DVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVF 369

Query: 143 KSMDARSLVSWNTMIATYVQNCKYTEALELFLQLLKGALDPDPFTFS 3
             M+ +++VSWNTM+A YVQN +Y EAL++F  +L   L PD  T +
Sbjct: 370 NQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIA 416



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
 Frame = -2

Query: 308 DAVTLVNLLPCCA-----NNGKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLF 144
           DA+T+ ++LP  A     + GK+IH   ++     +  +  A++ MYA+CG L+ A   F
Sbjct: 411 DAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFF 470

Query: 143 KSMDARSLVSWNTMIATYVQNCKYTEALELFLQLLKGALDPDPFTF 6
             M  + +VSWNTMI  Y  +     +++ F ++      P+  TF
Sbjct: 471 DGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTF 516


>ref|XP_002521253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539521|gb|EEF41109.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 484

 Score =  114 bits (285), Expect = 8e-24
 Identities = 59/107 (55%), Positives = 73/107 (68%), Gaps = 5/107 (4%)
 Frame = -2

Query: 308 DAVTLVNLLPCCA-----NNGKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLF 144
           D +T++NLLP C+     +NGK IHG AIR+ FLPHLVLETAL+DMY +CG L  A+ +F
Sbjct: 10  DVITMINLLPSCSQSGALSNGKCIHGYAIRKMFLPHLVLETALVDMYGKCGELELAKRVF 69

Query: 143 KSMDARSLVSWNTMIATYVQNCKYTEALELFLQLLKGALDPDPFTFS 3
             +D ++LVSWNTMIA YVQN    EALELF  L      PD  T +
Sbjct: 70  SQIDEKNLVSWNTMIAAYVQNGLNMEALELFNCLWNEPPKPDAVTIA 116



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
 Frame = -2

Query: 308 DAVTLVNLLPCCA-----NNGKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLF 144
           DAVT+ ++LP  A     +  K+IH   I+     H ++  A++ MYA+CG L+ A  +F
Sbjct: 111 DAVTIASILPAYAELASVSECKQIHSYIIKIELSSHTIISNAIVYMYAKCGDLKTARRIF 170

Query: 143 KSMDARSLVSWNTMIATYVQNCKYTEALELFLQLLKGALDPDPFTF 6
             M  +++VSWNTMI  Y  +   T +++LF ++ +  + P+  TF
Sbjct: 171 DGMLCKNVVSWNTMIMAYGIHGFGTMSIQLFSEMRENGIKPNESTF 216


>ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
           gi|297744563|emb|CBI37825.3| unnamed protein product
           [Vitis vinifera]
          Length = 802

 Score =  111 bits (278), Expect = 5e-23
 Identities = 55/107 (51%), Positives = 71/107 (66%), Gaps = 5/107 (4%)
 Frame = -2

Query: 308 DAVTLVNLLPCCANN-----GKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLF 144
           D +T++NLLP CA       GK +HG AIR  FLPHLVLETAL+DMY +CG L+ AE LF
Sbjct: 328 DWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLF 387

Query: 143 KSMDARSLVSWNTMIATYVQNCKYTEALELFLQLLKGALDPDPFTFS 3
             M+ R+L+SWN MIA+Y +N +  +A+ LF  L    L PD  T +
Sbjct: 388 GQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIA 434



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
 Frame = -2

Query: 317 IDVDAVTLVNLLPCCA-----NNGKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAE 153
           I +D  +++ +L  C+      NGKEIH   +R      ++++T+L+DMYA+CG +  AE
Sbjct: 223 IKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAE 282

Query: 152 FLFKSMDARSLVSWNTMIATYVQNCKYTEALELFLQLLKGA-LDPDPFT 9
            LF  +  +S+V+WN MI  Y  N +  E+     ++ +G  L PD  T
Sbjct: 283 RLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWIT 331



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
 Frame = -2

Query: 308 DAVTLVNLLPCCAN-----NGKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLF 144
           DA T+ ++LP  A        ++IHG   +     +  +  +++ MY +CG+L +A  +F
Sbjct: 429 DATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIF 488

Query: 143 KSMDARSLVSWNTMIATYVQNCKYTEALELFLQLLKGALDPDPFTF 6
             M  + ++SWNT+I  Y  +     ++ELF ++ +   +P+  TF
Sbjct: 489 DRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTF 534



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/85 (32%), Positives = 45/85 (52%)
 Frame = -2

Query: 263 GKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLFKSMDARSLVSWNTMIATYVQ 84
           G+ +HG  I+      + +  +LI MYA+ G +  AE +F+ M  R LVSWN+MI+ YV 
Sbjct: 145 GERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVS 204

Query: 83  NCKYTEALELFLQLLKGALDPDPFT 9
                 +L  F ++    +  D F+
Sbjct: 205 VGDGWRSLSCFREMQASGIKLDRFS 229


>ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75098809|sp|O49619.1|PP350_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
           gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis
           thaliana] gi|7270464|emb|CAB80230.1| putative protein
           [Arabidopsis thaliana] gi|332661071|gb|AEE86471.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 804

 Score =  111 bits (277), Expect = 7e-23
 Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
 Frame = -2

Query: 308 DAVTLVNLLPCCAN-NGKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLFKSMD 132
           D +T +NLLP  A   G+ IHG A+RR FLPH+VLETALIDMY +CG L+ AE +F  M 
Sbjct: 333 DVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMA 392

Query: 131 ARSLVSWNTMIATYVQNCKYTEALELFLQLLKGALDPDPFTFS 3
            ++++SWN++IA YVQN K   ALELF +L   +L PD  T +
Sbjct: 393 EKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIA 435



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
 Frame = -2

Query: 308 DAVTLVNLLPCCANN-----GKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLF 144
           D+ T+ ++LP  A +     G+EIH   ++  +  + ++  +L+ MYA CG L  A   F
Sbjct: 430 DSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCF 489

Query: 143 KSMDARSLVSWNTMIATYVQNCKYTEALELFLQLLKGALDPDPFTFS 3
             +  + +VSWN++I  Y  +     ++ LF +++   ++P+  TF+
Sbjct: 490 NHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFA 536



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/85 (35%), Positives = 49/85 (57%)
 Frame = -2

Query: 263 GKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLFKSMDARSLVSWNTMIATYVQ 84
           GK+IH + I+  F+  + +  +LI +Y + G    AE +F+ M  R +VSWN+MI+ Y+ 
Sbjct: 149 GKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLA 208

Query: 83  NCKYTEALELFLQLLKGALDPDPFT 9
                 +L LF ++LK    PD F+
Sbjct: 209 LGDGFSSLMLFKEMLKCGFKPDRFS 233



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
 Frame = -2

Query: 263 GKEIHGLAIR-RSFLPHLVLETALIDMYAQCGSLRQAEFLFKSMDARSLVSWNTMIATYV 87
           GKEIH  A+R R     +++ T+++DMY++ G +  AE +F  M  R++V+WN MI  Y 
Sbjct: 250 GKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYA 309

Query: 86  QNCKYTEALELFLQLL-KGALDPDPFT 9
           +N + T+A   F ++  +  L PD  T
Sbjct: 310 RNGRVTDAFLCFQKMSEQNGLQPDVIT 336


>ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312926|gb|EFH43349.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 803

 Score =  110 bits (276), Expect = 9e-23
 Identities = 55/103 (53%), Positives = 73/103 (70%), Gaps = 1/103 (0%)
 Frame = -2

Query: 308 DAVTLVNLLPCCAN-NGKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLFKSMD 132
           D +TL+NLLP CA   G+ IHG A+RR FLPH+VL+TALIDMY + G L+ AE +F  + 
Sbjct: 329 DVITLINLLPACAILEGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIA 388

Query: 131 ARSLVSWNTMIATYVQNCKYTEALELFLQLLKGALDPDPFTFS 3
            ++L+SWN++IA YVQN K   ALELF +L   +L PD  T +
Sbjct: 389 EKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIA 431



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
 Frame = -2

Query: 308 DAVTLVNLLPCCANN-----GKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLF 144
           D+ T+ ++LP  A +     G++IH   ++  +  + ++  +L+ MYA CG L  A   F
Sbjct: 426 DSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCF 485

Query: 143 KSMDARSLVSWNTMIATYVQNCKYTEALELFLQLLKGALDPDPFTFS 3
             +  + +VSWN++I  Y  +     ++ LF +++   +DP+  TF+
Sbjct: 486 NHVLLKDVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFA 532



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 7/107 (6%)
 Frame = -2

Query: 308 DAVTLVNLLPCCA-----NNGKEIHGLAIR-RSFLPHLVLETALIDMYAQCGSLRQAEFL 147
           D  + ++ L  C+     N GKE+H  A+R R     +++ T+++DMY++ G +  AE +
Sbjct: 226 DRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERI 285

Query: 146 FKSMDARSLVSWNTMIATYVQNCKYTEALELFLQLL-KGALDPDPFT 9
           FK +  R++V+WN +I  Y +N + T+A   F ++  +  L PD  T
Sbjct: 286 FKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVIT 332



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/85 (35%), Positives = 49/85 (57%)
 Frame = -2

Query: 263 GKEIHGLAIRRSFLPHLVLETALIDMYAQCGSLRQAEFLFKSMDARSLVSWNTMIATYVQ 84
           GK+IH + I+  F+  + +  +LI +Y + G    AE +F+ M  R +VSWN+MI+ Y+ 
Sbjct: 145 GKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYLA 204

Query: 83  NCKYTEALELFLQLLKGALDPDPFT 9
                 +L LF ++LK    PD F+
Sbjct: 205 LEDGFRSLMLFKEMLKFGFKPDRFS 229