BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00013534
         (267 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      110   2e-22
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      105   3e-21
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   101   7e-20
emb|CBI26820.3| unnamed protein product [Vitis vinifera]               99   3e-19
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...    99   3e-19

>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  110 bits (274), Expect = 2e-22
 Identities = 52/86 (60%), Positives = 63/86 (73%)
 Frame = -2

Query: 260 NFFKDLPDDQWIRTTDFTQLRSIGQSSAFCLQLPYGCNLPNIREYFVYYKEVDGPLCLLR 81
           N+FKD+PDDQW+RTTDFT+   IGQSS  CL+LP+   LPN RE F YYKE +G L L  
Sbjct: 196 NYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRENFAYYKENEGRLVLES 255

Query: 80  GSSFSRSLDLVPIVEPSPEIKVPYRI 3
           GSS+S +L LVPIV PS  I +P+ I
Sbjct: 256 GSSYSCNLSLVPIVCPSRVIDLPFEI 281


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  105 bits (263), Expect = 3e-21
 Identities = 51/86 (59%), Positives = 62/86 (72%)
 Frame = -2

Query: 260 NFFKDLPDDQWIRTTDFTQLRSIGQSSAFCLQLPYGCNLPNIREYFVYYKEVDGPLCLLR 81
           N+FKD+PDDQW+RTTDFT+   IGQSS   L+LP+   LPN RE F YYKE +G L L  
Sbjct: 196 NYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGRLVLES 255

Query: 80  GSSFSRSLDLVPIVEPSPEIKVPYRI 3
           GSS+S +L LVPIV PS  I +P+ I
Sbjct: 256 GSSYSCNLSLVPIVCPSRVIDLPFEI 281


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1133

 Score =  101 bits (251), Expect = 7e-20
 Identities = 47/86 (54%), Positives = 59/86 (68%)
 Frame = -2

Query: 260 NFFKDLPDDQWIRTTDFTQLRSIGQSSAFCLQLPYGCNLPNIREYFVYYKEVDGPLCLLR 81
           N+F+D+PD+QW+RTTDFT    IG SS+ CL+LP    LPN  E F YYKE +G   L  
Sbjct: 197 NYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTFVLES 256

Query: 80  GSSFSRSLDLVPIVEPSPEIKVPYRI 3
           G +FSR+ DLVPIV PS  + +PY I
Sbjct: 257 GLTFSRNPDLVPIVGPSSGVNLPYNI 282


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 47/85 (55%), Positives = 57/85 (67%)
 Frame = -2

Query: 257 FFKDLPDDQWIRTTDFTQLRSIGQSSAFCLQLPYGCNLPNIREYFVYYKEVDGPLCLLRG 78
           +FK+ PDDQW+R  DFT    IGQS A CL+LPYG  LPN RE F YYKE DG   L  G
Sbjct: 154 YFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESG 213

Query: 77  SSFSRSLDLVPIVEPSPEIKVPYRI 3
           SS+S +L LVPI+ P     +P++I
Sbjct: 214 SSYSHNLHLVPILGPPQGSSLPFQI 238


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 47/85 (55%), Positives = 57/85 (67%)
 Frame = -2

Query: 257 FFKDLPDDQWIRTTDFTQLRSIGQSSAFCLQLPYGCNLPNIREYFVYYKEVDGPLCLLRG 78
           +FK+ PDDQW+R  DFT    IGQS A CL+LPYG  LPN RE F YYKE DG   L  G
Sbjct: 190 YFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESG 249

Query: 77  SSFSRSLDLVPIVEPSPEIKVPYRI 3
           SS+S +L LVPI+ P     +P++I
Sbjct: 250 SSYSHNLHLVPILGPPQGSSLPFQI 274