BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00013441
         (389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520874.1| pentatricopeptide repeat-containing protein,...   123   1e-26
ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containi...   115   3e-24
ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containi...   115   3e-24
ref|XP_003622422.1| Pentatricopeptide repeat-containing protein ...   115   4e-24
ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24

>ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540005|gb|EEF41583.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 833

 Score =  123 bits (309), Expect = 1e-26
 Identities = 58/129 (44%), Positives = 84/129 (65%)
 Frame = -2

Query: 388 PDDTTVVTLLMLYAHYKYALFGKSVHCYLLRRWSHLPTHVTSTLIDLYCNCGLLDAAAAL 209
           PD  +  ++L   +     L GKSVH YL+R W      V +TLID+Y  CGLL  A  +
Sbjct: 542 PDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHI 601

Query: 208 FDRMEKKDLICWNTFIAGLGSQGRGKVALDVFEQMLLNGMKPDDVTFIGVLVACAHSGLV 29
           F+R+ +K+L+ WN+ I G GS G    A+++F++M  +G+KPDDVTF+ +L +C HSGL+
Sbjct: 602 FERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLI 661

Query: 28  EEGV*YFEM 2
           EEG+  FEM
Sbjct: 662 EEGLHLFEM 670



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 31/123 (25%), Positives = 62/123 (50%)
 Frame = -2

Query: 388 PDDTTVVTLLMLYAHYKYALFGKSVHCYLLRRWSHLPTHVTSTLIDLYCNCGLLDAAAAL 209
           PD   + +++      +    G ++H ++++    L   V S+L+D+Y   G  + A  +
Sbjct: 441 PDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNI 500

Query: 208 FDRMEKKDLICWNTFIAGLGSQGRGKVALDVFEQMLLNGMKPDDVTFIGVLVACAHSGLV 29
           F  M  K+L+ WN+ I+         +++++F Q+L N + PD V+F  VL A +    +
Sbjct: 501 FSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAAL 560

Query: 28  EEG 20
            +G
Sbjct: 561 LKG 563



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 29/107 (27%), Positives = 57/107 (53%)
 Frame = -2

Query: 340 KYALFGKSVHCYLLRRWSHLPTHVTSTLIDLYCNCGLLDAAAALFDRMEKKDLICWNTFI 161
           ++  FGK VHC  ++       +V ++L+ +Y  C ++++A  +F+ +  K++  WN  I
Sbjct: 255 EFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALI 314

Query: 160 AGLGSQGRGKVALDVFEQMLLNGMKPDDVTFIGVLVACAHSGLVEEG 20
           +     G    AL +++QM L  +  D  T + VL + + +GL + G
Sbjct: 315 SAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLG 361


>ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  115 bits (289), Expect = 3e-24
 Identities = 60/127 (47%), Positives = 77/127 (60%)
 Frame = -2

Query: 388 PDDTTVVTLLMLYAHYKYALFGKSVHCYLLRRWSHLPTHVTSTLIDLYCNCGLLDAAAAL 209
           P+D T+VT+L   A       GK VH Y          +V + LID+Y  CGL++ A  +
Sbjct: 316 PNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEV 375

Query: 208 FDRMEKKDLICWNTFIAGLGSQGRGKVALDVFEQMLLNGMKPDDVTFIGVLVACAHSGLV 29
           F+ M+ KDLI WN+ I GL + G G  AL +F QM +NG KPD +TFIGVL +C H GLV
Sbjct: 376 FESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLV 435

Query: 28  EEGV*YF 8
           EEG  YF
Sbjct: 436 EEGTSYF 442


>ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  115 bits (289), Expect = 3e-24
 Identities = 60/127 (47%), Positives = 77/127 (60%)
 Frame = -2

Query: 388 PDDTTVVTLLMLYAHYKYALFGKSVHCYLLRRWSHLPTHVTSTLIDLYCNCGLLDAAAAL 209
           P+D T+VT+L   A       GK VH Y          +V + LID+Y  CGL++ A  +
Sbjct: 358 PNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEV 417

Query: 208 FDRMEKKDLICWNTFIAGLGSQGRGKVALDVFEQMLLNGMKPDDVTFIGVLVACAHSGLV 29
           F+ M+ KDLI WN+ I GL + G G  AL +F QM +NG KPD +TFIGVL +C H GLV
Sbjct: 418 FESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLV 477

Query: 28  EEGV*YF 8
           EEG  YF
Sbjct: 478 EEGTSYF 484


>ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355497437|gb|AES78640.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  115 bits (288), Expect = 4e-24
 Identities = 57/127 (44%), Positives = 76/127 (59%)
 Frame = -2

Query: 388 PDDTTVVTLLMLYAHYKYALFGKSVHCYLLRRWSHLPTHVTSTLIDLYCNCGLLDAAAAL 209
           PD+TT+ ++L   +  +    GK +HCY+ R W       T+ L+D+Y  CG L  +  +
Sbjct: 578 PDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNV 637

Query: 208 FDRMEKKDLICWNTFIAGLGSQGRGKVALDVFEQMLLNGMKPDDVTFIGVLVACAHSGLV 29
           FD M  KD+  WNT I   G  G GK AL +FE+MLL+ +KPD  TF  VL AC+HS LV
Sbjct: 638 FDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLV 697

Query: 28  EEGV*YF 8
           EEGV  F
Sbjct: 698 EEGVQIF 704



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 35/115 (30%), Positives = 64/115 (55%)
 Frame = -2

Query: 388 PDDTTVVTLLMLYAHYKYALFGKSVHCYLLRRWSHLPTHVTSTLIDLYCNCGLLDAAAAL 209
           PD   + ++L   +  K    GK++H + ++        V + L++LY NC  +  A  +
Sbjct: 341 PDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTV 400

Query: 208 FDRMEKKDLICWNTFIAGLGSQGRGKVALDVFEQMLLNGMKPDDVTFIGVLVACA 44
           FD M  ++++ WN+  +   + G  +  L+VF +M+LNG+KPD VT + +L AC+
Sbjct: 401 FDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACS 455



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 36/115 (31%), Positives = 63/115 (54%)
 Frame = -2

Query: 388 PDDTTVVTLLMLYAHYKYALFGKSVHCYLLRRWSHLPTHVTSTLIDLYCNCGLLDAAAAL 209
           PD  TV  +L   +  +    GK++H + L+        V++ L++LY +C  +  A A+
Sbjct: 240 PDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAV 299

Query: 208 FDRMEKKDLICWNTFIAGLGSQGRGKVALDVFEQMLLNGMKPDDVTFIGVLVACA 44
           FD M  +++I WN+  +   + G  +  L+VF +M LNG+KPD +    +L AC+
Sbjct: 300 FDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACS 354



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 30/94 (31%), Positives = 53/94 (56%)
 Frame = -2

Query: 325 GKSVHCYLLRRWSHLPTHVTSTLIDLYCNCGLLDAAAALFDRMEKKDLICWNTFIAGLGS 146
           GK +H +++R        V+S  ++ Y  C  +  A  +FD M  +D++ WN+  +   +
Sbjct: 160 GKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVN 219

Query: 145 QGRGKVALDVFEQMLLNGMKPDDVTFIGVLVACA 44
            G  +  L+VF +M+L+G+KPD VT   +L AC+
Sbjct: 220 CGFPQKGLNVFREMVLDGVKPDPVTVSCILSACS 253


>ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  114 bits (286), Expect = 6e-24
 Identities = 55/128 (42%), Positives = 80/128 (62%)
 Frame = -2

Query: 388 PDDTTVVTLLMLYAHYKYALFGKSVHCYLLRRWSHLPTHVTSTLIDLYCNCGLLDAAAAL 209
           PD  TV ++L   AH      G +VH Y+ R       +V ++LID+YC CG+++ A  +
Sbjct: 347 PDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEV 406

Query: 208 FDRMEKKDLICWNTFIAGLGSQGRGKVALDVFEQMLLNGMKPDDVTFIGVLVACAHSGLV 29
           F RM+ KD + W + I+GL   G    ALD+F QML  G++P   TF+G+L+ACAH+GLV
Sbjct: 407 FHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLV 466

Query: 28  EEGV*YFE 5
            +G+ YFE
Sbjct: 467 NKGLEYFE 474



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 36/117 (30%), Positives = 60/117 (51%)
 Frame = -2

Query: 385 DDTTVVTLLMLYAHYKYALFGKSVHCYLLRRWSHLPTHVTSTLIDLYCNCGLLDAAAALF 206
           ++ T++ L    A     + G+ +H + L+        V++ LI +Y  CG L  A  +F
Sbjct: 115 NNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMF 174

Query: 205 DRMEKKDLICWNTFIAGLGSQGRGKVALDVFEQMLLNGMKPDDVTFIGVLVACAHSG 35
           D M  +DL+ WNT I G     + K  L +F+ M    +K D VT + +++AC+H G
Sbjct: 175 DGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG 231



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 31/153 (20%)
 Frame = -2

Query: 385 DDTTVVTLLMLYAHYKYALFGKSVHCYLLRRWSHLPTHVTSTLIDLY------------- 245
           D  T+V +++  +H     F  S+  Y+      +  ++ +TLID+Y             
Sbjct: 216 DAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVF 275

Query: 244 ------------------CNCGLLDAAAALFDRMEKKDLICWNTFIAGLGSQGRGKVALD 119
                                G L AA  LFD M K+D+I W + I G     +   A+ 
Sbjct: 276 DRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVK 335

Query: 118 VFEQMLLNGMKPDDVTFIGVLVACAHSGLVEEG 20
           +F++M+   +KPD VT   VL ACAH G ++ G
Sbjct: 336 LFQEMMAAKVKPDKVTVASVLSACAHLGKLDVG 368