BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00013415
         (958 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2...   137   5e-30
ref|XP_003573633.1| PREDICTED: DNA-directed RNA polymerase III s...   135   1e-29
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   134   4e-29
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...   134   4e-29
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...   130   4e-28

>ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1|
           predicted protein [Populus trichocarpa]
          Length = 667

 Score =  137 bits (344), Expect = 5e-30
 Identities = 74/133 (55%), Positives = 96/133 (72%), Gaps = 5/133 (3%)
 Frame = -3

Query: 401 LMDIDGGED---CVIKEIDVFLNPSLDDQTKLYVMQYPLRPSWRPYEVNEKSK-VKIDAR 234
           LMD+D  ED    V++EIDV+  PS+D  T+LYVMQYPLRP WRPYE++E+ K V++   
Sbjct: 98  LMDVDKEEDEDDVVVREIDVYYTPSVDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPE 157

Query: 233 QSKLEVDLNLDVGVNYDEDAADPLFEKKVTLSSS-EVPFATQYAVGVLVGDKLYLNPLDR 57
            +++EVDL++D   NYD D A  L  KK TLSSS   P AT YAVGVL+G+KL+LNP+  
Sbjct: 158 STEVEVDLSIDDTKNYDPDIASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHA 217

Query: 56  VVQFRPSMAHANS 18
           VVQ RPSM + +S
Sbjct: 218 VVQLRPSMDYLSS 230


>ref|XP_003573633.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           [Brachypodium distachyon]
          Length = 663

 Score =  135 bits (341), Expect = 1e-29
 Identities = 83/198 (41%), Positives = 110/198 (55%), Gaps = 15/198 (7%)
 Frame = -3

Query: 566 KVKGKVKAEPIDAPLPPRIPLNKEEPKIEXXXXXXXXXXXXXXXSDGFSNEDPISLMDID 387
           K KGK K +P   P P R+P  + +P+ E                +    ED +  M+ D
Sbjct: 40  KSKGKPKPKPKPKPEPERVPEPESKPQDEPRGT------------EAAPPEDGVDAMETD 87

Query: 386 G------------GEDCVIKEIDVFLNPS-LDDQTKLYVMQYPLRPSWRPYEVNEKSK-V 249
           G             ED +++EIDV+  P   DD T LY+MQYPLRP WRPYE+NE  K V
Sbjct: 88  GVAASVGTDGMNHDEDFLVREIDVYFTPKPFDDDTMLYIMQYPLRPCWRPYELNEICKEV 147

Query: 248 KIDARQSKLEVDLNLDVGV-NYDEDAADPLFEKKVTLSSSEVPFATQYAVGVLVGDKLYL 72
           ++  R SK+EVDL++D    NYD D +      K TLSSSE    + YAVGVL G+ ++L
Sbjct: 148 RVKPRCSKVEVDLDIDTDSGNYDSDVSSSSKLTKQTLSSSEAADVSDYAVGVLSGNLVHL 207

Query: 71  NPLDRVVQFRPSMAHANS 18
           N +D V+Q RPSM+H NS
Sbjct: 208 NHIDAVMQLRPSMSHLNS 225


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score =  134 bits (336), Expect = 4e-29
 Identities = 71/143 (49%), Positives = 97/143 (67%), Gaps = 3/143 (2%)
 Frame = -3

Query: 431 DGFSNEDPISLMDIDGGEDCVIKEIDVFLNPSLDDQTKLYVMQYPLRPSWRPYEVNEK-S 255
           D   ++DPI   + D  ED V++EIDV   PS+D  +KLYV+QYPLRP WRPYE   +  
Sbjct: 103 DAMVDDDPI---EEDASEDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCD 159

Query: 254 KVKIDARQSKLEVDLNLDVGVNYDEDAADPLFE-KKVTLSSS-EVPFATQYAVGVLVGDK 81
           +V++     ++EVDLN+D+  N  ++ AD  F+ KK TL+SS + P AT YAVG+L+G+K
Sbjct: 160 EVRVKPSTGEVEVDLNVDIESNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNK 219

Query: 80  LYLNPLDRVVQFRPSMAHANSDG 12
           L+LNP+  VVQ RPS  H NS G
Sbjct: 220 LHLNPVHAVVQLRPSFEHLNSGG 242


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           [Cucumis sativus]
          Length = 702

 Score =  134 bits (336), Expect = 4e-29
 Identities = 71/143 (49%), Positives = 97/143 (67%), Gaps = 3/143 (2%)
 Frame = -3

Query: 431 DGFSNEDPISLMDIDGGEDCVIKEIDVFLNPSLDDQTKLYVMQYPLRPSWRPYEVNEK-S 255
           D   ++DPI   + D  ED V++EIDV   PS+D  +KLYV+QYPLRP WRPYE   +  
Sbjct: 103 DAMVDDDPI---EEDASEDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCD 159

Query: 254 KVKIDARQSKLEVDLNLDVGVNYDEDAADPLFE-KKVTLSSS-EVPFATQYAVGVLVGDK 81
           +V++     ++EVDLN+D+  N  ++ AD  F+ KK TL+SS + P AT YAVG+L+G+K
Sbjct: 160 EVRVKPSTGEVEVDLNVDIESNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNK 219

Query: 80  LYLNPLDRVVQFRPSMAHANSDG 12
           L+LNP+  VVQ RPS  H NS G
Sbjct: 220 LHLNPVHAVVQLRPSFEHLNSGG 242


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 677

 Score =  130 bits (328), Expect = 4e-28
 Identities = 65/124 (52%), Positives = 90/124 (72%), Gaps = 2/124 (1%)
 Frame = -3

Query: 380 EDCVIKEIDVFLNPSLDDQTKLYVMQYPLRPSWRPYEVNEK-SKVKIDARQSKLEVDLNL 204
           ED +++EIDVF  PS+D  T+LYVMQYPLRP WRPYE++E+  +V++  + +++EVDL +
Sbjct: 114 EDMIVREIDVFFTPSIDSATQLYVMQYPLRPCWRPYELDERCEEVRVKPQSTEVEVDLTI 173

Query: 203 DVGVNYDEDAADPLFEKKVTLSSSEV-PFATQYAVGVLVGDKLYLNPLDRVVQFRPSMAH 27
           D   N+D   A     KK TLS+S + P  T YAVGVL+G+KL+LNP+  VVQ RPS+ H
Sbjct: 174 DDSSNWDPAQASKYNFKKQTLSTSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRPSLEH 233

Query: 26  ANSD 15
            NS+
Sbjct: 234 VNSN 237