BLASTX nr result

ID: Dioscorea21_contig00013371 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00013371
         (652 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002465271.1| hypothetical protein SORBIDRAFT_01g035310 [S...   139   5e-31
ref|XP_003557912.1| PREDICTED: E3 ubiquitin-protein ligase RING1...   136   4e-30
gb|EEC75261.1| hypothetical protein OsI_11578 [Oryza sativa Indi...   136   4e-30
ref|NP_001050120.1| Os03g0351800 [Oryza sativa Japonica Group] g...   136   4e-30
ref|NP_001149786.1| LOC100283413 [Zea mays] gi|195634655|gb|ACG3...   134   1e-29

>ref|XP_002465271.1| hypothetical protein SORBIDRAFT_01g035310 [Sorghum bicolor]
           gi|241919125|gb|EER92269.1| hypothetical protein
           SORBIDRAFT_01g035310 [Sorghum bicolor]
          Length = 285

 Score =  139 bits (350), Expect = 5e-31
 Identities = 63/127 (49%), Positives = 83/127 (65%)
 Frame = +3

Query: 270 THWCHQCQQTIRPRDRNLVCPNCDGGFIEELNEMHGIGSTFDLPRMFMDRHRGNPLGLME 449
           ++WC+QC+Q +RPR R +VCP CD GF+ E++++  + S F    M  D HR    G+ME
Sbjct: 7   SYWCYQCRQRVRPRGREMVCPYCDSGFVAEMDDVDALMSHF--VGMDPDFHRDPRFGIME 64

Query: 450 ALTTFMSHGMGARNREVDVRGRTNSFPDPRMGFGDGPWLIFQGHLPSRMGDNGGFDFLIN 629
           A++  M HGM   NREVDVRGR N F D  M FG GPWL+F+G LP  + ++ GFD  IN
Sbjct: 65  AISAVMRHGMSGMNREVDVRGRPNIFSDLEMEFGSGPWLLFRGQLPGHLTEDNGFDVFIN 124

Query: 630 GGHGFGM 650
           G  G GM
Sbjct: 125 GRRGVGM 131


>ref|XP_003557912.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Brachypodium
           distachyon]
          Length = 288

 Score =  136 bits (342), Expect = 4e-30
 Identities = 62/132 (46%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
 Frame = +3

Query: 261 SGG--THWCHQCQQTIRPRDRNLVCPNCDGGFIEELNEMHGIGSTFDLPRMFMDRHRGNP 434
           SGG  ++WC QC+Q +RPR R + CP CD GF+ E++++  + S F    M  D HR   
Sbjct: 2   SGGRQSYWCFQCRQRVRPRGREMECPYCDSGFVAEMDDVDAVMSQF--VGMDTDFHRDPR 59

Query: 435 LGLMEALTTFMSHGMGARNREVDVRGRTNSFPDPRMGFGDGPWLIFQGHLPSRMGDNGGF 614
            G+MEA++  M HGMG  NR+VDVRGR +   D  M FG GPWL+F+G LP  + ++ GF
Sbjct: 60  FGIMEAMSAVMRHGMGGMNRDVDVRGRPSILTDLEMEFGSGPWLLFRGQLPGHLSEDNGF 119

Query: 615 DFLINGGHGFGM 650
           D ++NG  G GM
Sbjct: 120 DVIVNGRRGVGM 131


>gb|EEC75261.1| hypothetical protein OsI_11578 [Oryza sativa Indica Group]
          Length = 208

 Score =  136 bits (342), Expect = 4e-30
 Identities = 63/132 (47%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
 Frame = +3

Query: 261 SGG--THWCHQCQQTIRPRDRNLVCPNCDGGFIEELNEMHGIGSTFDLPRMFMDRHRGNP 434
           SGG  ++WC+QC+Q +RPR +++ CP CD GF+ E++++  +   F    M  D HR   
Sbjct: 2   SGGRQSYWCYQCRQRVRPRGQDMECPYCDSGFVSEMDDVDALMRHF--VGMDPDFHRDPR 59

Query: 435 LGLMEALTTFMSHGMGARNREVDVRGRTNSFPDPRMGFGDGPWLIFQGHLPSRMGDNGGF 614
            G+MEA++  M HGM   NREVDVRGR N F D  M FG GPWL+F+G LP  + ++ GF
Sbjct: 60  FGIMEAISAVMRHGMAGTNREVDVRGRPNIFSDLEMEFGSGPWLLFRGQLPGHLSEDNGF 119

Query: 615 DFLINGGHGFGM 650
           D  ING  G GM
Sbjct: 120 DVFINGRRGVGM 131


>ref|NP_001050120.1| Os03g0351800 [Oryza sativa Japonica Group]
           gi|108708145|gb|ABF95940.1| Zinc finger, C3HC4 type
           family protein, expressed [Oryza sativa Japonica Group]
           gi|113548591|dbj|BAF12034.1| Os03g0351800 [Oryza sativa
           Japonica Group] gi|125586254|gb|EAZ26918.1| hypothetical
           protein OsJ_10846 [Oryza sativa Japonica Group]
           gi|215697791|dbj|BAG91984.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 283

 Score =  136 bits (342), Expect = 4e-30
 Identities = 63/132 (47%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
 Frame = +3

Query: 261 SGG--THWCHQCQQTIRPRDRNLVCPNCDGGFIEELNEMHGIGSTFDLPRMFMDRHRGNP 434
           SGG  ++WC+QC+Q +RPR +++ CP CD GF+ E++++  +   F    M  D HR   
Sbjct: 2   SGGRQSYWCYQCRQRVRPRGQDMECPYCDSGFVSEMDDVDALMRHF--VGMDPDFHRDPR 59

Query: 435 LGLMEALTTFMSHGMGARNREVDVRGRTNSFPDPRMGFGDGPWLIFQGHLPSRMGDNGGF 614
            G+MEA++  M HGM   NREVDVRGR N F D  M FG GPWL+F+G LP  + ++ GF
Sbjct: 60  FGIMEAISAVMRHGMAGTNREVDVRGRPNIFSDLEMEFGSGPWLLFRGQLPGHLSEDNGF 119

Query: 615 DFLINGGHGFGM 650
           D  ING  G GM
Sbjct: 120 DVFINGRRGVGM 131


>ref|NP_001149786.1| LOC100283413 [Zea mays] gi|195634655|gb|ACG36796.1| RHC1A [Zea
           mays] gi|224031911|gb|ACN35031.1| unknown [Zea mays]
           gi|238007022|gb|ACR34546.1| unknown [Zea mays]
           gi|413955730|gb|AFW88379.1| putative RING zinc finger
           domain superfamily protein isoform 1 [Zea mays]
           gi|413955731|gb|AFW88380.1| putative RING zinc finger
           domain superfamily protein isoform 2 [Zea mays]
          Length = 292

 Score =  134 bits (337), Expect = 1e-29
 Identities = 63/132 (47%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
 Frame = +3

Query: 255 MSSGG-THWCHQCQQTIRPRDRNLVCPNCDGGFIEELNEMHGIGSTFDLPRMFMDRHRGN 431
           MS+G   +WC+QC+Q +RPR R +VCP CD GF+ E++++  + S F       D HR  
Sbjct: 1   MSAGRQAYWCYQCRQRVRPRGREMVCPYCDSGFVAEMDDVDALMSHF--VGTDPDFHRDP 58

Query: 432 PLGLMEALTTFMSHGMGARNREVDVRGRTNSFPDPRMGFGDGPWLIFQGHLPSRMGDNGG 611
             G+MEA++  M HGM   NREVDVRGR N F D  M FG GPWL+F+G LP  + ++ G
Sbjct: 59  RFGIMEAISAVMRHGMAGMNREVDVRGRPNFFSDLEMEFGSGPWLLFRGQLPGHLTEDNG 118

Query: 612 FDFLINGGHGFG 647
           FD  +NG  G G
Sbjct: 119 FDVFVNGRRGGG 130


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