BLASTX nr result

ID: Dioscorea21_contig00013335 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00013335
         (1325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530460.1| transcription cofactor, putative [Ricinus co...    82   2e-13
ref|XP_002271720.2| PREDICTED: uncharacterized protein LOC100264...    77   1e-11
ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II tra...    75   3e-11
ref|XP_004137040.1| PREDICTED: uncharacterized protein LOC101220...    75   3e-11
gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata]                   72   3e-10

>ref|XP_002530460.1| transcription cofactor, putative [Ricinus communis]
            gi|223530005|gb|EEF31930.1| transcription cofactor,
            putative [Ricinus communis]
          Length = 1382

 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 48/104 (46%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
 Frame = -1

Query: 1226 NQSLAQQALLPQNISKNAPSTTIQNS---TSLPPPMQGVTQNAMSHI-GANSNLQNVSSM 1059
            NQ+  +Q LL QNI  N  ST IQ+S   TS  PP+ G+ Q ++ ++ G NSN+QN+S +
Sbjct: 139  NQTQTRQQLLSQNIQNNMASTGIQSSAGLTSALPPVSGLAQTSIPNVVGQNSNMQNISGV 198

Query: 1058 PQNSINSIAGQGATPNIY-NSQRQMQGQRQPPSIVTQQHQQPPQ 930
            PQNS  +  GQG   N++ NSQRQM  Q+  P    QQ Q P Q
Sbjct: 199  PQNSAGNSLGQGVPSNMFANSQRQMPRQQVVPQQQQQQSQNPTQ 242


>ref|XP_002271720.2| PREDICTED: uncharacterized protein LOC100264243 [Vitis vinifera]
          Length = 1671

 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
 Frame = -1

Query: 1226 NQSLAQQALLPQNISKNAPSTTIQNSTSLPPPMQGVT---QNAMSHI-GANSNLQNVSSM 1059
            NQS  +Q LL QNI  N  S  + +S SLP  +  VT   Q  M ++ G NS +QN+S +
Sbjct: 456  NQSQTRQQLLAQNIQTNIASG-VPSSASLPSTLSSVTSLNQTPMQNVVGQNSGMQNISGI 514

Query: 1058 PQNSINSIAGQGATPNIY-NSQRQMQGQRQPPSIVTQQHQQPPQNTRIY 915
            PQNS+ +  GQG   N++ NSQRQ QG+   P +V QQ QQ  Q+++ Y
Sbjct: 515  PQNSVGNSMGQGVPSNMFANSQRQSQGR---PQVVPQQQQQQSQSSQQY 560


>ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            15a-like, partial [Cucumis sativus]
          Length = 589

 Score = 75.5 bits (184), Expect = 3e-11
 Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
 Frame = -1

Query: 1226 NQSLAQQALLPQNISKNAPSTTIQNSTSLPPPMQGVTQNAMSH-IGANSNLQNVSSMPQN 1050
            NQ   +Q +L QNI  N    +  + +S  PP+ G+  ++MS+ +G N N+QNVS +PQN
Sbjct: 137  NQPQPRQQILQQNIPNNIVPQSSSSLSSAVPPVAGLASSSMSNMVGQNPNIQNVSGVPQN 196

Query: 1049 SINSIAGQGATPNIY-NSQRQMQGQRQPPSIVTQQHQQPPQ 930
            S  +  GQG   N++ NSQR +QG++    +V+QQ QQ PQ
Sbjct: 197  SGGNAMGQGVPSNVFSNSQRPLQGRQ----VVSQQQQQQPQ 233


>ref|XP_004137040.1| PREDICTED: uncharacterized protein LOC101220890 [Cucumis sativus]
          Length = 1345

 Score = 75.5 bits (184), Expect = 3e-11
 Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
 Frame = -1

Query: 1226 NQSLAQQALLPQNISKNAPSTTIQNSTSLPPPMQGVTQNAMSH-IGANSNLQNVSSMPQN 1050
            NQ   +Q +L QNI  N    +  + +S  PP+ G+  ++MS+ +G N N+QNVS +PQN
Sbjct: 142  NQPQPRQQILQQNIPNNIVPQSSSSLSSAVPPVAGLASSSMSNMVGQNPNIQNVSGVPQN 201

Query: 1049 SINSIAGQGATPNIY-NSQRQMQGQRQPPSIVTQQHQQPPQ 930
            S  +  GQG   N++ NSQR +QG++    +V+QQ QQ PQ
Sbjct: 202  SGGNAMGQGVPSNVFSNSQRPLQGRQ----VVSQQQQQQPQ 238


>gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata]
          Length = 1405

 Score = 72.0 bits (175), Expect = 3e-10
 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
 Frame = -1

Query: 1226 NQSLAQQALLPQNISKNAPSTTIQNSTSLP---PPMQGVTQNAM-SHIGANSNLQNVSSM 1059
            NQS  +Q LL QNI  N  S  +Q S+ L    P + G++Q+ + S +G   N+QN+S +
Sbjct: 151  NQSQVRQQLLSQNIQNNMSSAGVQGSSGLSSALPSVSGLSQSPIPSVVGQTVNMQNMSGI 210

Query: 1058 PQNSINSIAGQGATPNIY-NSQRQMQGQRQPPSIVTQQHQQPPQNTR 921
             QNS  +  GQG   N++ NSQRQ+QG++Q   ++ QQ QQ  QN++
Sbjct: 211  SQNSGGNSMGQGVPSNLFANSQRQIQGRQQ---VLPQQQQQQSQNSQ 254


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