BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00013045
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK95306.1| unknown [Populus trichocarpa]                           75   5e-21
emb|CBI31382.3| unnamed protein product [Vitis vinifera]               71   5e-20
ref|XP_004142445.1| PREDICTED: RNA-binding protein Nova-2-like [...    70   5e-20
ref|XP_002264331.2| PREDICTED: RNA-binding protein Nova-1-like [...    71   5e-20
ref|NP_850764.1| binding to TOMV RNA 1L (long form) protein [Ara...    70   9e-20

>gb|ABK95306.1| unknown [Populus trichocarpa]
          Length = 313

 Score = 75.5 bits (184), Expect(2) = 5e-21
 Identities = 37/57 (64%), Positives = 46/57 (80%)
 Frame = +2

Query: 275 GRNIMEITQTTGTKIKISERGVFLPGTNDRKVTITGSHDAIAAAEDLIKLKITANSE 445
           GRNIMEI+Q +G +IKIS+RG F+ GTNDRK+TITGS  AI AAED+I  K++  SE
Sbjct: 253 GRNIMEISQNSGARIKISDRGDFMSGTNDRKITITGSQRAIHAAEDMIMQKVSYASE 309



 Score = 50.4 bits (119), Expect(2) = 5e-21
 Identities = 26/62 (41%), Positives = 35/62 (56%)
 Frame = +1

Query: 25  SSAYNTGTHETNATGGKFPSKAASARSPTRPLEHQNDTLTFAVPDEHIGAILGRGGRNIM 204
           ++AYN+  H  N  G KF              E + +++T  V DEHIG ++GRGGRNIM
Sbjct: 208 AAAYNSTNHGLNGAGVKFQHNK----------EDRTNSVTIGVADEHIGLVVGRGGRNIM 257

Query: 205 EI 210
           EI
Sbjct: 258 EI 259


>emb|CBI31382.3| unnamed protein product [Vitis vinifera]
          Length = 357

 Score = 71.2 bits (173), Expect(2) = 5e-20
 Identities = 35/57 (61%), Positives = 44/57 (77%)
 Frame = +2

Query: 275 GRNIMEITQTTGTKIKISERGVFLPGTNDRKVTITGSHDAIAAAEDLIKLKITANSE 445
           GRNIM+I+Q +G +IKIS+RG F+ GT DRKVTITGS  AI AAE +I  K+ + SE
Sbjct: 300 GRNIMDISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMIMQKVASASE 356



 Score = 51.2 bits (121), Expect(2) = 5e-20
 Identities = 25/62 (40%), Positives = 38/62 (61%)
 Frame = +1

Query: 25  SSAYNTGTHETNATGGKFPSKAASARSPTRPLEHQNDTLTFAVPDEHIGAILGRGGRNIM 204
           ++AYN+  +  N  GGKF +            E +++++T  V DEHIG ++GRGGRNIM
Sbjct: 255 AAAYNSMNYGPNGAGGKFQNNK----------EDRSNSVTIGVADEHIGLVVGRGGRNIM 304

Query: 205 EI 210
           +I
Sbjct: 305 DI 306


>ref|XP_004142445.1| PREDICTED: RNA-binding protein Nova-2-like [Cucumis sativus]
           gi|449527683|ref|XP_004170839.1| PREDICTED: RNA-binding
           protein Nova-2-like [Cucumis sativus]
          Length = 326

 Score = 69.7 bits (169), Expect(2) = 5e-20
 Identities = 35/57 (61%), Positives = 43/57 (75%)
 Frame = +2

Query: 275 GRNIMEITQTTGTKIKISERGVFLPGTNDRKVTITGSHDAIAAAEDLIKLKITANSE 445
           GRNI+EI+Q +G +IKIS+RG F+ GT DRKVTITGS  AI AAE +I  K+   SE
Sbjct: 265 GRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMILQKVAYASE 321



 Score = 52.8 bits (125), Expect(2) = 5e-20
 Identities = 27/61 (44%), Positives = 38/61 (62%)
 Frame = +1

Query: 28  SAYNTGTHETNATGGKFPSKAASARSPTRPLEHQNDTLTFAVPDEHIGAILGRGGRNIME 207
           +A N G++    TGG+F +     RS     E +N++LT  V D HIG ++GRGGRNI+E
Sbjct: 212 NAMNYGSNG-GGTGGRFQNNKPDTRSSEIVQEERNNSLTIGVSDGHIGLVVGRGGRNILE 270

Query: 208 I 210
           I
Sbjct: 271 I 271


>ref|XP_002264331.2| PREDICTED: RNA-binding protein Nova-1-like [Vitis vinifera]
          Length = 309

 Score = 71.2 bits (173), Expect(2) = 5e-20
 Identities = 35/57 (61%), Positives = 44/57 (77%)
 Frame = +2

Query: 275 GRNIMEITQTTGTKIKISERGVFLPGTNDRKVTITGSHDAIAAAEDLIKLKITANSE 445
           GRNIM+I+Q +G +IKIS+RG F+ GT DRKVTITGS  AI AAE +I  K+ + SE
Sbjct: 252 GRNIMDISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMIMQKVASASE 308



 Score = 51.2 bits (121), Expect(2) = 5e-20
 Identities = 25/62 (40%), Positives = 38/62 (61%)
 Frame = +1

Query: 25  SSAYNTGTHETNATGGKFPSKAASARSPTRPLEHQNDTLTFAVPDEHIGAILGRGGRNIM 204
           ++AYN+  +  N  GGKF +            E +++++T  V DEHIG ++GRGGRNIM
Sbjct: 207 AAAYNSMNYGPNGAGGKFQNNK----------EDRSNSVTIGVADEHIGLVVGRGGRNIM 256

Query: 205 EI 210
           +I
Sbjct: 257 DI 258


>ref|NP_850764.1| binding to TOMV RNA 1L (long form) protein [Arabidopsis thaliana]
           gi|332003360|gb|AED90743.1| binding to TOMV RNA 1L (long
           form) protein [Arabidopsis thaliana]
          Length = 334

 Score = 70.1 bits (170), Expect(2) = 9e-20
 Identities = 35/57 (61%), Positives = 43/57 (75%)
 Frame = +2

Query: 275 GRNIMEITQTTGTKIKISERGVFLPGTNDRKVTITGSHDAIAAAEDLIKLKITANSE 445
           GRNIMEITQ TG +IKIS+RG F+ GT DRKV+ITG   AI  AE +IK K+ + +E
Sbjct: 274 GRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAETMIKQKVDSATE 330



 Score = 51.6 bits (122), Expect(2) = 9e-20
 Identities = 26/62 (41%), Positives = 36/62 (58%)
 Frame = +1

Query: 25  SSAYNTGTHETNATGGKFPSKAASARSPTRPLEHQNDTLTFAVPDEHIGAILGRGGRNIM 204
           ++ YN+  +  N +GGK+ +            E  + T+T  V DEHIG +LGRGGRNIM
Sbjct: 229 TAGYNSVNYAPNGSGGKYQNHK----------EEASTTVTIGVADEHIGLVLGRGGRNIM 278

Query: 205 EI 210
           EI
Sbjct: 279 EI 280