BLASTX nr result

ID: Dioscorea21_contig00012918 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00012918
         (572 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332099.1| predicted protein [Populus trichocarpa] gi|2...   167   9e-40
ref|XP_002527984.1| Ubiquinone biosynthesis protein coq-8, putat...   164   1e-38
ref|XP_002332097.1| predicted protein [Populus trichocarpa] gi|2...   157   9e-37
ref|XP_002874225.1| ABC1 family protein [Arabidopsis lyrata subs...   155   4e-36
ref|XP_002450940.1| hypothetical protein SORBIDRAFT_05g021423 [S...   155   4e-36

>ref|XP_002332099.1| predicted protein [Populus trichocarpa] gi|222874919|gb|EEF12050.1|
            predicted protein [Populus trichocarpa]
          Length = 987

 Score =  167 bits (424), Expect = 9e-40
 Identities = 77/112 (68%), Positives = 91/112 (81%)
 Frame = +3

Query: 9    SKMFTNPKIHDSFMGVGDYENLVLPGGKFGLGFRRFQSATGKLTSFGHSGVGGSTGFCDI 188
            +K+F NP+IHD FMGVG+Y NLVLP GKFGLGFRRF S+ G    FGHSG+GGSTGFCDI
Sbjct: 870  NKIFNNPRIHDEFMGVGEYRNLVLPNGKFGLGFRRFSSSDGSFYGFGHSGMGGSTGFCDI 929

Query: 189  EHDFAIAVTVNKMSLGGVTRSIIQLVCSELNVPLPDEFSSFGEKGPDMQLNL 344
            ++ FAIAVT+NKMSLG  TR I+Q VCSELNVPLPDEF+   E  PD +L++
Sbjct: 930  KNRFAIAVTLNKMSLGTATRRIVQFVCSELNVPLPDEFAVLSETAPDEELSI 981


>ref|XP_002527984.1| Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
            gi|223532610|gb|EEF34396.1| Ubiquinone biosynthesis
            protein coq-8, putative [Ricinus communis]
          Length = 965

 Score =  164 bits (414), Expect = 1e-38
 Identities = 74/112 (66%), Positives = 95/112 (84%)
 Frame = +3

Query: 9    SKMFTNPKIHDSFMGVGDYENLVLPGGKFGLGFRRFQSATGKLTSFGHSGVGGSTGFCDI 188
            +++F +P+IHD+F+GVG+YENL +P GKFGLGFRR  S  G L  FGHSG+GGSTGFCDI
Sbjct: 848  TRIFIDPRIHDAFLGVGEYENLAVPNGKFGLGFRRNSSNDGSLIGFGHSGMGGSTGFCDI 907

Query: 189  EHDFAIAVTVNKMSLGGVTRSIIQLVCSELNVPLPDEFSSFGEKGPDMQLNL 344
            ++ FAIAVTVNK+S+G VTR I +LVCSE+NVPLP+E S  GE+GPD++LN+
Sbjct: 908  KNRFAIAVTVNKLSVGFVTRKIAELVCSEVNVPLPEELSISGERGPDLELNI 959


>ref|XP_002332097.1| predicted protein [Populus trichocarpa] gi|222874917|gb|EEF12048.1|
           predicted protein [Populus trichocarpa]
          Length = 152

 Score =  157 bits (398), Expect = 9e-37
 Identities = 73/100 (73%), Positives = 83/100 (83%)
 Frame = +3

Query: 12  KMFTNPKIHDSFMGVGDYENLVLPGGKFGLGFRRFQSATGKLTSFGHSGVGGSTGFCDIE 191
           ++F NP+IHD FMG G+Y NLVLP GKFGLGFRRF+S+ G    FGHSG+GGSTGFCD +
Sbjct: 52  RIFNNPRIHDEFMGAGEYRNLVLPNGKFGLGFRRFRSSDGSFYGFGHSGIGGSTGFCDNK 111

Query: 192 HDFAIAVTVNKMSLGGVTRSIIQLVCSELNVPLPDEFSSF 311
           + FAIAVT+NKMSLG  TR IIQ VCSELNVPLPDEFS F
Sbjct: 112 NRFAIAVTLNKMSLGTATRRIIQFVCSELNVPLPDEFSVF 151


>ref|XP_002874225.1| ABC1 family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297320062|gb|EFH50484.1| ABC1 family protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 1011

 Score =  155 bits (392), Expect = 4e-36
 Identities = 70/108 (64%), Positives = 87/108 (80%)
 Frame = +3

Query: 15   MFTNPKIHDSFMGVGDYENLVLPGGKFGLGFRRFQSATGKLTSFGHSGVGGSTGFCDIEH 194
            +F+NP IHD+FMG GDY  LV+P GKFGLGF+R  S  G L  FGHSG+GGSTGFCDI++
Sbjct: 898  LFSNPSIHDAFMGAGDYSGLVVPDGKFGLGFKRVISQDGSLVGFGHSGMGGSTGFCDIKN 957

Query: 195  DFAIAVTVNKMSLGGVTRSIIQLVCSELNVPLPDEFSSFGEKGPDMQL 338
             F+IAVT+NKMS+GGVT  I++LVCSELN+PLP +FS   + GPD Q+
Sbjct: 958  RFSIAVTLNKMSMGGVTAKIVKLVCSELNIPLPKDFSLSTDTGPDSQM 1005


>ref|XP_002450940.1| hypothetical protein SORBIDRAFT_05g021423 [Sorghum bicolor]
           gi|241936783|gb|EES09928.1| hypothetical protein
           SORBIDRAFT_05g021423 [Sorghum bicolor]
          Length = 202

 Score =  155 bits (392), Expect = 4e-36
 Identities = 74/113 (65%), Positives = 94/113 (83%), Gaps = 1/113 (0%)
 Frame = +3

Query: 9   SKMFTNPKIHDSFMGVGDYENLVLPGGKFGLGFRRFQSAT-GKLTSFGHSGVGGSTGFCD 185
           S+MF++ KI D+FMGVG+YE +V   GKFGLGFRR+  A+ GKL  FGHSG+GGSTGFCD
Sbjct: 83  SRMFSSDKILDAFMGVGEYEGMVQQDGKFGLGFRRYYDASSGKLRCFGHSGMGGSTGFCD 142

Query: 186 IEHDFAIAVTVNKMSLGGVTRSIIQLVCSELNVPLPDEFSSFGEKGPDMQLNL 344
           +E++FAIAV VNK++LG VTR +I+LV  EL +P+PDE+S+ GEKGPDM LNL
Sbjct: 143 VENNFAIAVMVNKLALGSVTRGVIRLVLEELGLPVPDEYSATGEKGPDMLLNL 195


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