BLASTX nr result

ID: Dioscorea21_contig00011303 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00011303
         (210 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]     78   6e-13
ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [S...    78   6e-13
ref|XP_002301171.1| predicted protein [Populus trichocarpa] gi|2...    78   8e-13
gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]              77   1e-12
gb|AFP74112.1| poly-A binding protein, partial [Nicotiana bentha...    77   1e-12

>dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 42/58 (72%), Positives = 48/58 (82%)
 Frame = -3

Query: 208 LEMDQTEVLHLLESPDALKAKVAEAMEVLRSVTXXXXXQPNAPSDHLAALSLNDGIIS 35
           LEMDQTEVLHLLESP+ALK+KVAEAM+VLR+V       PNAP+  LA LSL+DGIIS
Sbjct: 691 LEMDQTEVLHLLESPEALKSKVAEAMDVLRNVA--QQQNPNAPTSQLAGLSLSDGIIS 746


>ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
           gi|241939315|gb|EES12460.1| hypothetical protein
           SORBIDRAFT_06g021850 [Sorghum bicolor]
          Length = 664

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 42/58 (72%), Positives = 48/58 (82%)
 Frame = -3

Query: 208 LEMDQTEVLHLLESPDALKAKVAEAMEVLRSVTXXXXXQPNAPSDHLAALSLNDGIIS 35
           LEMDQTEVLHLLESPDALK+KVAEAM+VLR+V       PN P++ LAALSL +GIIS
Sbjct: 609 LEMDQTEVLHLLESPDALKSKVAEAMDVLRNVA--HQQNPNTPTNQLAALSLTEGIIS 664


>ref|XP_002301171.1| predicted protein [Populus trichocarpa] gi|222842897|gb|EEE80444.1|
           predicted protein [Populus trichocarpa]
          Length = 657

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = -3

Query: 208 LEMDQTEVLHLLESPDALKAKVAEAMEVLRSVTXXXXXQPNAPSDHLAALSLNDGIIS 35
           LEMDQTEVLHLLESP+ALKAKVAEAMEVLR+V        N P+DHLA+LSLN+ ++S
Sbjct: 596 LEMDQTEVLHLLESPEALKAKVAEAMEVLRTVAAQQQI--NNPADHLASLSLNENLVS 651


>gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
          Length = 652

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = -3

Query: 208 LEMDQTEVLHLLESPDALKAKVAEAMEVLRSVTXXXXXQPNAPSDHLAALSLNDGIIS 35
           LEMDQTEVLHLLESP+ALKAKVAEAMEVLR+V       P +P+D +A+LSLND I+S
Sbjct: 596 LEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGP-SPTDRVASLSLNDNIVS 652


>gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
          Length = 643

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = -3

Query: 208 LEMDQTEVLHLLESPDALKAKVAEAMEVLRSVTXXXXXQPNAPSDHLAALSLNDGIIS 35
           LEMDQTEVLHLLESP+ALKAKVAEAMEVLR+V+     Q + P+D LA+LSLNDG++S
Sbjct: 589 LEMDQTEVLHLLESPEALKAKVAEAMEVLRNVS---QQQSSNPADQLASLSLNDGLVS 643


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