BLASTX nr result

ID: Dioscorea21_contig00011302 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00011302
         (204 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]     91   1e-16
ref|XP_002301171.1| predicted protein [Populus trichocarpa] gi|2...    89   4e-16
ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [S...    89   5e-16
gb|AFP74112.1| poly-A binding protein, partial [Nicotiana bentha...    87   1e-15
gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana taba...    87   1e-15

>dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 45/56 (80%), Positives = 51/56 (91%)
 Frame = -3

Query: 202 LEMDQTEVLHLLESPDALKAKVAEAMEVLRSVTQQQQPNAPSDHLAALSLNDGIIS 35
           LEMDQTEVLHLLESP+ALK+KVAEAM+VLR+V QQQ PNAP+  LA LSL+DGIIS
Sbjct: 691 LEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQNPNAPTSQLAGLSLSDGIIS 746


>ref|XP_002301171.1| predicted protein [Populus trichocarpa] gi|222842897|gb|EEE80444.1|
           predicted protein [Populus trichocarpa]
          Length = 657

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 44/56 (78%), Positives = 51/56 (91%)
 Frame = -3

Query: 202 LEMDQTEVLHLLESPDALKAKVAEAMEVLRSVTQQQQPNAPSDHLAALSLNDGIIS 35
           LEMDQTEVLHLLESP+ALKAKVAEAMEVLR+V  QQQ N P+DHLA+LSLN+ ++S
Sbjct: 596 LEMDQTEVLHLLESPEALKAKVAEAMEVLRTVAAQQQINNPADHLASLSLNENLVS 651


>ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
           gi|241939315|gb|EES12460.1| hypothetical protein
           SORBIDRAFT_06g021850 [Sorghum bicolor]
          Length = 664

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 44/56 (78%), Positives = 50/56 (89%)
 Frame = -3

Query: 202 LEMDQTEVLHLLESPDALKAKVAEAMEVLRSVTQQQQPNAPSDHLAALSLNDGIIS 35
           LEMDQTEVLHLLESPDALK+KVAEAM+VLR+V  QQ PN P++ LAALSL +GIIS
Sbjct: 609 LEMDQTEVLHLLESPDALKSKVAEAMDVLRNVAHQQNPNTPTNQLAALSLTEGIIS 664


>gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
          Length = 643

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 45/56 (80%), Positives = 52/56 (92%)
 Frame = -3

Query: 202 LEMDQTEVLHLLESPDALKAKVAEAMEVLRSVTQQQQPNAPSDHLAALSLNDGIIS 35
           LEMDQTEVLHLLESP+ALKAKVAEAMEVLR+V+QQQ  N P+D LA+LSLNDG++S
Sbjct: 589 LEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSN-PADQLASLSLNDGLVS 643


>gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
          Length = 330

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 45/56 (80%), Positives = 52/56 (92%)
 Frame = -3

Query: 202 LEMDQTEVLHLLESPDALKAKVAEAMEVLRSVTQQQQPNAPSDHLAALSLNDGIIS 35
           LEMDQTEVLHLLESP+ALKAKVAEAMEVLR+V+QQQ  N P+D LA+LSLNDG++S
Sbjct: 276 LEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSN-PADQLASLSLNDGLVS 330


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