BLASTX nr result
ID: Dioscorea21_contig00011125
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00011125
(918 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001048506.1| Os02g0815800 [Oryza sativa Japonica Group] g... 251 6e-68
dbj|BAJ88393.1| predicted protein [Hordeum vulgare subsp. vulgare] 249 8e-68
ref|NP_001148354.1| 3-5 exoribonuclease CSL4 [Zea mays] gi|19561... 246 1e-67
ref|XP_003578616.1| PREDICTED: exosome complex component CSL4-li... 242 2e-65
ref|XP_002319669.1| predicted protein [Populus trichocarpa] gi|1... 238 6e-65
>ref|NP_001048506.1| Os02g0815800 [Oryza sativa Japonica Group]
gi|113538037|dbj|BAF10420.1| Os02g0815800 [Oryza sativa
Japonica Group]
Length = 197
Score = 251 bits (641), Expect(2) = 6e-68
Identities = 122/145 (84%), Positives = 137/145 (94%)
Frame = +2
Query: 227 PPPPGSSDQRSIVDVVGHRSHGPVPEPGSIVVVRVTKVMARMASADIMCVGSKAVKEKFT 406
PPPPGS+DQRS V+VVGH++HG VP+PGS+V+ RVTKVMARMASADIMCV SKAVKEKFT
Sbjct: 50 PPPPGSTDQRSTVEVVGHKAHGAVPQPGSVVIARVTKVMARMASADIMCVDSKAVKEKFT 109
Query: 407 GIIRQQDVRATEIDKVDMYLSFRPGDIVRALVLSLGDARAYHLSTARNELGVISAQSISG 586
G+IRQQDVRATEIDKVDM+ S+RPGDIVRALVLSLGDARAY+LSTA+NELGV+SAQSI+G
Sbjct: 110 GMIRQQDVRATEIDKVDMFQSYRPGDIVRALVLSLGDARAYYLSTAQNELGVVSAQSITG 169
Query: 587 GVMVPISWTEMQCPLTGQIEHRKVA 661
G +VPISWTEMQC LTGQIE RKVA
Sbjct: 170 GTLVPISWTEMQCELTGQIEQRKVA 194
Score = 33.5 bits (75), Expect(2) = 6e-68
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 10 MAAMRMEQGESDLVTPGEKLGDATVLIAGKGAY 108
MAA M+ ++VTPGE LG+++ L+AG GAY
Sbjct: 1 MAATAMDHDGGEVVTPGELLGNSS-LLAGLGAY 32
>dbj|BAJ88393.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 200
Score = 249 bits (637), Expect(2) = 8e-68
Identities = 123/145 (84%), Positives = 135/145 (93%)
Frame = +2
Query: 227 PPPPGSSDQRSIVDVVGHRSHGPVPEPGSIVVVRVTKVMARMASADIMCVGSKAVKEKFT 406
PP PGSSDQRS V+VVGH++HG VP+PGSIV+ RVTKVMARMASADIMCV SKAVKEKFT
Sbjct: 53 PPAPGSSDQRSTVEVVGHKAHGAVPQPGSIVIARVTKVMARMASADIMCVDSKAVKEKFT 112
Query: 407 GIIRQQDVRATEIDKVDMYLSFRPGDIVRALVLSLGDARAYHLSTARNELGVISAQSISG 586
G+IRQQDVRATEIDKVDMY S+RPGDIVRALVLSLGDARAY+LSTA+NELGV+SAQSI+G
Sbjct: 113 GMIRQQDVRATEIDKVDMYQSYRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAQSIAG 172
Query: 587 GVMVPISWTEMQCPLTGQIEHRKVA 661
G +VP SWTEMQC LTGQIE RKVA
Sbjct: 173 GTLVPTSWTEMQCELTGQIEQRKVA 197
Score = 34.7 bits (78), Expect(2) = 8e-68
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 10 MAAMRMEQ--GESDLVTPGEKLGDATVLIAGKGAY 108
MAA ME G +VTPGE LG ++ L AG+GAY
Sbjct: 1 MAATAMEHDGGAEVVVTPGELLGPSSYLAAGRGAY 35
>ref|NP_001148354.1| 3-5 exoribonuclease CSL4 [Zea mays] gi|195618352|gb|ACG31006.1| 3-5
exoribonuclease CSL4 [Zea mays]
gi|223975657|gb|ACN32016.1| unknown [Zea mays]
gi|413939469|gb|AFW74020.1| 3-5 exoribonuclease CSL4
[Zea mays]
Length = 199
Score = 246 bits (628), Expect(2) = 1e-67
Identities = 118/145 (81%), Positives = 135/145 (93%)
Frame = +2
Query: 227 PPPPGSSDQRSIVDVVGHRSHGPVPEPGSIVVVRVTKVMARMASADIMCVGSKAVKEKFT 406
PP PGS DQRS V+VVGH++HG VP+PGS+V+ RVTKVMARMASADIMCV SKA++EKFT
Sbjct: 52 PPAPGSDDQRSTVEVVGHKAHGAVPQPGSVVIARVTKVMARMASADIMCVDSKAIREKFT 111
Query: 407 GIIRQQDVRATEIDKVDMYLSFRPGDIVRALVLSLGDARAYHLSTARNELGVISAQSISG 586
G+IRQQDVRATEIDKVDMY S+RPGDIV+A+VLSLGDARAY+LSTA+NELGV+SAQSI+G
Sbjct: 112 GMIRQQDVRATEIDKVDMYQSYRPGDIVKAMVLSLGDARAYYLSTAKNELGVVSAQSIAG 171
Query: 587 GVMVPISWTEMQCPLTGQIEHRKVA 661
G +VPISWTEMQC LTGQIE RKVA
Sbjct: 172 GTLVPISWTEMQCDLTGQIEQRKVA 196
Score = 37.4 bits (85), Expect(2) = 1e-67
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 10 MAAMRMEQ-GESDLVTPGEKLGDATVLIAGKGAY 108
MAA M+ G D+VTPGE LG++ L AG+GAY
Sbjct: 1 MAATAMDHDGGDDVVTPGELLGNSLTLAAGRGAY 34
>ref|XP_003578616.1| PREDICTED: exosome complex component CSL4-like [Brachypodium
distachyon]
Length = 199
Score = 242 bits (617), Expect(2) = 2e-65
Identities = 118/145 (81%), Positives = 134/145 (92%)
Frame = +2
Query: 227 PPPPGSSDQRSIVDVVGHRSHGPVPEPGSIVVVRVTKVMARMASADIMCVGSKAVKEKFT 406
PP P S D+RS V+VVGH++HG VP+PGS+V+ RVTKVMAR+ASADIMCV SKAVKEKFT
Sbjct: 52 PPSPDSPDKRSTVEVVGHKAHGAVPQPGSVVIARVTKVMARVASADIMCVDSKAVKEKFT 111
Query: 407 GIIRQQDVRATEIDKVDMYLSFRPGDIVRALVLSLGDARAYHLSTARNELGVISAQSISG 586
G+IRQQDVRATEIDKVDMY S+RPGDIVRALVLSLGDARAY+LSTA+NELGV+SAQSI+G
Sbjct: 112 GMIRQQDVRATEIDKVDMYQSYRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAQSIAG 171
Query: 587 GVMVPISWTEMQCPLTGQIEHRKVA 661
G++VP SWTEMQC LTGQIE RKVA
Sbjct: 172 GMLVPTSWTEMQCELTGQIEQRKVA 196
Score = 34.3 bits (77), Expect(2) = 2e-65
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 10 MAAMRMEQ-GESDLVTPGEKLGDATVLIAGKGAY 108
MAA ME G ++VTPGE LG ++ +AG GAY
Sbjct: 1 MAATAMEHDGGVEVVTPGELLGTSSSFVAGHGAY 34
>ref|XP_002319669.1| predicted protein [Populus trichocarpa] gi|118483759|gb|ABK93772.1|
unknown [Populus trichocarpa]
gi|222858045|gb|EEE95592.1| predicted protein [Populus
trichocarpa]
Length = 199
Score = 238 bits (606), Expect(2) = 6e-65
Identities = 116/144 (80%), Positives = 130/144 (90%)
Frame = +2
Query: 230 PPPGSSDQRSIVDVVGHRSHGPVPEPGSIVVVRVTKVMARMASADIMCVGSKAVKEKFTG 409
P P S DQR V+V GH++HG VPEPGS+V+ RVTKVMA+ ASADIMCVG K+V+EKFTG
Sbjct: 52 PSPDSPDQRPTVEVTGHKAHGAVPEPGSVVIARVTKVMAKTASADIMCVGPKSVQEKFTG 111
Query: 410 IIRQQDVRATEIDKVDMYLSFRPGDIVRALVLSLGDARAYHLSTARNELGVISAQSISGG 589
IIRQQDVRATEIDKVDM+LSFRPGDIVRALVLSLGDARAY+LSTA+NELGV+SA+S +G
Sbjct: 112 IIRQQDVRATEIDKVDMHLSFRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAESAAGA 171
Query: 590 VMVPISWTEMQCPLTGQIEHRKVA 661
MVPISWTEMQCPLTGQIE RKVA
Sbjct: 172 TMVPISWTEMQCPLTGQIEQRKVA 195
Score = 37.0 bits (84), Expect(2) = 6e-65
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +1
Query: 31 QGESDLVTPGEKLGDATVLIAGKGAYL 111
Q E ++ TPGE LG AT L AGKGAY+
Sbjct: 2 QEEGEMATPGEVLGKATELKAGKGAYI 28