BLASTX nr result

ID: Dioscorea21_contig00010131 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00010131
         (965 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17917.3| unnamed protein product [Vitis vinifera]              244   2e-62
ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g...   244   2e-62
emb|CAN82085.1| hypothetical protein VITISV_031054 [Vitis vinifera]   228   2e-57
ref|XP_002332094.1| predicted protein [Populus trichocarpa] gi|2...   225   1e-56
ref|XP_002518248.1| Poly(rC)-binding protein, putative [Ricinus ...   223   4e-56

>emb|CBI17917.3| unnamed protein product [Vitis vinifera]
          Length = 364

 Score =  244 bits (624), Expect = 2e-62
 Identities = 140/254 (55%), Positives = 173/254 (68%), Gaps = 8/254 (3%)
 Frame = -2

Query: 964 AADEKVVDIHGEFLKVHTALEAVVGHLRKFLVDHGVLPLFEKNLKMQLSQDHPVDTWGDK 785
           AADE++V++ GE LKV  ALEAVVGHLRKFLVDH VLPLFE+     +SQD   DTW DK
Sbjct: 116 AADERIVELQGEALKVQKALEAVVGHLRKFLVDHSVLPLFERTYNATISQDRQSDTWADK 175

Query: 784 TQSSGYNTQQTMMGDDYPAPMKRASLFIDHDSHLESQISRSSLSLYGPEPAVSGLRSPGL 605
           +   G  T QT MG DY  P KR SL++D     E+Q+  S L +YG E  +SG+RS GL
Sbjct: 176 SLLHG--TSQTGMGSDYSLPAKRESLYLDR----ETQMEHSGLPMYGQEHGLSGIRSSGL 229

Query: 604 VRAPGAIISQMTKKMQIPLLYAEAIIGIEGKRISYIRRASGAELTIRESITSSDEITVEI 425
            RA   I++Q+ + MQIPL YAE IIGI G  I+YIRR SGA LT++ES    DEITVEI
Sbjct: 230 GRAGAPIVTQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEI 289

Query: 424 KGTSQEVQAAELLIQEFISGYREPESGRY--LDAGPR-TYAQMPSSGY----YPSQPY-G 269
           KGTS +VQ A+ LIQEFIS ++EP    Y  +D+G R +Y+Q+ ++ Y      SQPY G
Sbjct: 290 KGTSSQVQTAQQLIQEFISNHKEPVPSSYGKMDSGLRSSYSQLGNTSYSSSSLSSQPYGG 349

Query: 268 RYESSDVGGYHNYR 227
            Y SS VGGY +YR
Sbjct: 350 GYGSSGVGGYSSYR 363


>ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis
           vinifera]
          Length = 466

 Score =  244 bits (624), Expect = 2e-62
 Identities = 140/254 (55%), Positives = 173/254 (68%), Gaps = 8/254 (3%)
 Frame = -2

Query: 964 AADEKVVDIHGEFLKVHTALEAVVGHLRKFLVDHGVLPLFEKNLKMQLSQDHPVDTWGDK 785
           AADE++V++ GE LKV  ALEAVVGHLRKFLVDH VLPLFE+     +SQD   DTW DK
Sbjct: 218 AADERIVELQGEALKVQKALEAVVGHLRKFLVDHSVLPLFERTYNATISQDRQSDTWADK 277

Query: 784 TQSSGYNTQQTMMGDDYPAPMKRASLFIDHDSHLESQISRSSLSLYGPEPAVSGLRSPGL 605
           +   G  T QT MG DY  P KR SL++D     E+Q+  S L +YG E  +SG+RS GL
Sbjct: 278 SLLHG--TSQTGMGSDYSLPAKRESLYLDR----ETQMEHSGLPMYGQEHGLSGIRSSGL 331

Query: 604 VRAPGAIISQMTKKMQIPLLYAEAIIGIEGKRISYIRRASGAELTIRESITSSDEITVEI 425
            RA   I++Q+ + MQIPL YAE IIGI G  I+YIRR SGA LT++ES    DEITVEI
Sbjct: 332 GRAGAPIVTQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEI 391

Query: 424 KGTSQEVQAAELLIQEFISGYREPESGRY--LDAGPR-TYAQMPSSGY----YPSQPY-G 269
           KGTS +VQ A+ LIQEFIS ++EP    Y  +D+G R +Y+Q+ ++ Y      SQPY G
Sbjct: 392 KGTSSQVQTAQQLIQEFISNHKEPVPSSYGKMDSGLRSSYSQLGNTSYSSSSLSSQPYGG 451

Query: 268 RYESSDVGGYHNYR 227
            Y SS VGGY +YR
Sbjct: 452 GYGSSGVGGYSSYR 465


>emb|CAN82085.1| hypothetical protein VITISV_031054 [Vitis vinifera]
          Length = 473

 Score =  228 bits (581), Expect = 2e-57
 Identities = 135/254 (53%), Positives = 166/254 (65%), Gaps = 8/254 (3%)
 Frame = -2

Query: 964 AADEKVVDIHGEFLKVHTALEAVVGHLRKFLVDHGVLPLFEKNLKMQLSQDHPVDTWGDK 785
           AADE++V++ GE LKV  ALEAVVGHLRKFLVDH VLPLFE+     +SQD   DTW DK
Sbjct: 234 AADERIVELQGEALKVQKALEAVVGHLRKFLVDHSVLPLFERTYNATISQDRQSDTWADK 293

Query: 784 TQSSGYNTQQTMMGDDYPAPMKRASLFIDHDSHLESQISRSSLSLYGPEPAVSGLRSPGL 605
           +   G  T QT MG DY  P KR SL++D     E+Q+  S L +YG E  +SG+RS GL
Sbjct: 294 SLLHG--TSQTGMGSDYSLPAKRESLYLDR----ETQMEHSGLPMYGQEHGLSGIRSSGL 347

Query: 604 VRAPGAIISQMTKKMQIPLLYAEAIIGIEGKRISYIRRASGAELTIRESITSSDEITVEI 425
            RA   I++Q+ + MQIPL YAE IIGI G  I+YIRR SGA LT++ES    DEITVEI
Sbjct: 348 GRAGAPIVTQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEI 407

Query: 424 KGTSQEVQAAELLIQEFISGYREPESGRY--LDAGPR-TYAQMPSSGY----YPSQPY-G 269
           KGTS          QEFIS ++EP    Y  +D+G R +Y+Q+ ++ Y      SQPY G
Sbjct: 408 KGTSS---------QEFISNHKEPVPSSYGKMDSGLRSSYSQLGNTSYSSSSLSSQPYGG 458

Query: 268 RYESSDVGGYHNYR 227
            Y SS VGGY +YR
Sbjct: 459 GYGSSGVGGYSSYR 472


>ref|XP_002332094.1| predicted protein [Populus trichocarpa] gi|222874914|gb|EEF12045.1|
           predicted protein [Populus trichocarpa]
          Length = 460

 Score =  225 bits (574), Expect = 1e-56
 Identities = 124/249 (49%), Positives = 162/249 (65%), Gaps = 8/249 (3%)
 Frame = -2

Query: 961 ADEKVVDIHGEFLKVHTALEAVVGHLRKFLVDHGVLPLFEKNLKMQLSQDHPVDTWGDKT 782
           +DE++V+IHGE +KV  ALEAV+GHLRKFLVDH V+P+FEK     +S + P D   D  
Sbjct: 198 SDERIVEIHGEAMKVFKALEAVIGHLRKFLVDHSVIPIFEKTYNATISLERPADACADNA 257

Query: 781 QSSGYNTQQTMMG--DDYPAPMKRASLFIDHDSHLESQISRSSLSLYGPEPAVSGLRSPG 608
           Q S ++      G   DY   +KR     +H++H E +IS+   SLYG +P + GLRS G
Sbjct: 258 QPSLHSAPAFSSGIISDYSLSLKRDPSIYEHETHFEHKISQPGFSLYG-DPGLVGLRSTG 316

Query: 607 LVRAPGAIISQMTKKMQIPLLYAEAIIGIEGKRISYIRRASGAELTIRESITSSDEITVE 428
           L RA   I++Q+T+ MQ+PL YAE IIG+ G  I+YIRR SGA L+I+ES    DEITVE
Sbjct: 317 LGRATAPIVTQVTQTMQVPLSYAEDIIGVAGSNIAYIRRTSGAILSIQESRGLPDEITVE 376

Query: 427 IKGTSQEVQAAELLIQEFISGYREPESGRY--LDAGPRTYAQMPSSGYYPSQPY----GR 266
           IKGTS +VQ A+ LIQEFIS ++EP    Y  +D G   Y+Q+  SG YPS  +    G 
Sbjct: 377 IKGTSSQVQMAQQLIQEFISNHKEPTPNMYGKIDVGLNAYSQIAESG-YPSSSFTSHLGG 435

Query: 265 YESSDVGGY 239
           Y SS +GGY
Sbjct: 436 YGSSSIGGY 444


>ref|XP_002518248.1| Poly(rC)-binding protein, putative [Ricinus communis]
           gi|223542595|gb|EEF44134.1| Poly(rC)-binding protein,
           putative [Ricinus communis]
          Length = 451

 Score =  223 bits (569), Expect = 4e-56
 Identities = 124/254 (48%), Positives = 168/254 (66%), Gaps = 8/254 (3%)
 Frame = -2

Query: 964 AADEKVVDIHGEFLKVHTALEAVVGHLRKFLVDHGVLPLFEKNLKMQLSQDHPVDTWGDK 785
           A DE++VD+ GE +KV  ALEA+VGHLRKFLVDH VLPLFEKN    +S D   +TW D+
Sbjct: 199 ATDERIVDLQGEAMKVLEALEAIVGHLRKFLVDHSVLPLFEKNYNALISLDRQAETWSDR 258

Query: 784 TQSSGYNTQQTMMGDDYPAPMKRASLFIDHDSHLESQISRSSLSLYGPEPAVSGLRSPGL 605
             SS + T Q  +  DYP   KR +L ++ ++  ESQ+  S +SLYG +PA+S +RS   
Sbjct: 259 --SSFHTTSQGRIDIDYPLSGKRDALLLERETPFESQVPLSRISLYGQDPAISSVRSSVF 316

Query: 604 VRAPGAIISQMTKKMQIPLLYAEAIIGIEGKRISYIRRASGAELTIRESITSSDEITVEI 425
            R+   I++Q+T+ MQ+P+ YAE IIGI G  I YIRR SGA +T+ ES    DEI VEI
Sbjct: 317 NRSSVPIVTQVTQTMQVPISYAEEIIGIRGNNIEYIRRTSGAIITVNESRGLPDEIIVEI 376

Query: 424 KGTSQEVQAAELLIQEFISGY-REPESGRY--LDAGPRT-YAQMPSSGYYPS----QPYG 269
           KGT+ EVQ A+ LIQEF+S + +EP +  Y   D G ++ Y+Q+ +S Y  S    + YG
Sbjct: 377 KGTASEVQMAQQLIQEFLSNHNKEPVTSSYSKYDTGLKSVYSQLDNSPYTSSSLSAKSYG 436

Query: 268 RYESSDVGGYHNYR 227
            Y SS +GGY ++R
Sbjct: 437 EYGSSSLGGYSSFR 450


Top