BLASTX nr result
ID: Dioscorea21_contig00007244
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00007244
(1445 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [S... 531 e-148
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi... 526 e-147
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g... 524 e-146
gb|ACG41877.1| RNA binding protein [Zea mays] 523 e-146
ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chlor... 521 e-145
>ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
gi|241917257|gb|EER90401.1| hypothetical protein
SORBIDRAFT_10g030300 [Sorghum bicolor]
Length = 441
Score = 531 bits (1369), Expect = e-148
Identities = 267/386 (69%), Positives = 308/386 (79%), Gaps = 2/386 (0%)
Frame = -1
Query: 1247 GHAGLRLDETVEAGSGRSRLDSWISSRFHG--VSRARIQASIRSGLVAVNGRPVEKVSHT 1074
GH G+RL+E V G GRSR+D+WIS+R G VSRAR+QASIR+GLVAVNGRPV KVSHT
Sbjct: 56 GHGGMRLEEAVPVGEGRSRIDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHT 115
Query: 1073 VRDGDRVCCTVSELQPLRAEPEDIPLDIVYEDSHVLVVNKPAHMVVHPAPGNANGTLVNA 894
V+ GD V CTVSELQPLRAE EDIPLDIVYED HVLVVNKPAHMVVHPAPGNANGTLVNA
Sbjct: 116 VKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNA 175
Query: 893 ILHHCRLPTMSCTSKKNXXXXXXXXXXXXXXXXDFHVEPSSTVDISSGNYDAHIRPGIVH 714
ILHHC++ T +C ++ + F+V+ +T D SS +A +RPGIVH
Sbjct: 176 ILHHCKISTFTCLARSSTGDECLDSSDDDIDV--FNVDQFATEDASSEVRNALVRPGIVH 233
Query: 713 RLDKGTSGLLVVAKDEDSHAHLAEQFKSHTIRRVYISLTSGVPSPSSGRIEVPIARDPNN 534
RLDKGTSGLLVVAKDE SHA LAEQFK HTIRRVYISLT GVP+P+SGRIE IARDPNN
Sbjct: 234 RLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGVPNPNSGRIEASIARDPNN 293
Query: 533 RVRMTAVAGSINSKHVRYAASRYKVLEVLANGGSALVQWRLETGRTHQIRAHAKYLGIPL 354
R+RM A+AGS ++ R+AASRYKV EV GGSALV+WRLETGRTHQIRAHAKY+GIPL
Sbjct: 294 RIRMIAIAGS-GHRYARHAASRYKVREVFVGGGSALVEWRLETGRTHQIRAHAKYIGIPL 352
Query: 353 LGDEVYGGTKSMALSLLKPRTPSSFHGYLSRMISNLDRPCLHALSLGFKHPHTGEQVQFS 174
LGDE YGGTKSMALSLL+PRTPS +H LS +IS +DRPCLHA LGFKHPH+G+ ++FS
Sbjct: 353 LGDETYGGTKSMALSLLRPRTPSKYHSDLSNLISKVDRPCLHAALLGFKHPHSGKILEFS 412
Query: 173 CSPPADFSDALSLLRNINNVSSNNGE 96
C PP DFS+ L LR + + + NG+
Sbjct: 413 CPPPDDFSEVLDELRKVTSSDAQNGD 438
>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
Length = 445
Score = 526 bits (1356), Expect = e-147
Identities = 267/386 (69%), Positives = 306/386 (79%), Gaps = 2/386 (0%)
Frame = -1
Query: 1253 RLGHAGLRLDETVEAGSGRSRLDSWISSRFHG--VSRARIQASIRSGLVAVNGRPVEKVS 1080
R GH G RL+E V AG GRSR+D+WIS+R G VSRARIQASIR+GLV VNGRPV KVS
Sbjct: 53 RGGHGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVS 112
Query: 1079 HTVRDGDRVCCTVSELQPLRAEPEDIPLDIVYEDSHVLVVNKPAHMVVHPAPGNANGTLV 900
H V+ GD V CTVSELQPLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNANGTLV
Sbjct: 113 HMVKGGDIVSCTVSELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLV 172
Query: 899 NAILHHCRLPTMSCTSKKNXXXXXXXXXXXXXXXXDFHVEPSSTVDISSGNYDAHIRPGI 720
NAILHHC++ T +C ++ + F ++ +T ++SS +A +RPGI
Sbjct: 173 NAILHHCKISTFTCLARNSIDDECPDSSDDDIDV--FDIDQFTTGEVSSEVREALVRPGI 230
Query: 719 VHRLDKGTSGLLVVAKDEDSHAHLAEQFKSHTIRRVYISLTSGVPSPSSGRIEVPIARDP 540
VHRLDKGTSGLLVVAKDE SHA LAEQFK HTIRRVYISLT G P+P+SGRIEVPIARDP
Sbjct: 231 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDP 290
Query: 539 NNRVRMTAVAGSINSKHVRYAASRYKVLEVLANGGSALVQWRLETGRTHQIRAHAKYLGI 360
NNR+RM A GS ++ R+AASRYKV EV A GGSALV+WRLETGRTHQIRAHAKYLGI
Sbjct: 291 NNRIRMIATPGS-GHRYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGI 349
Query: 359 PLLGDEVYGGTKSMALSLLKPRTPSSFHGYLSRMISNLDRPCLHALSLGFKHPHTGEQVQ 180
PLLGDE YGGTKSMALSLL+PRTPS +H LS MIS +DRPCLHA LGFKHPH+G+ ++
Sbjct: 350 PLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILE 409
Query: 179 FSCSPPADFSDALSLLRNINNVSSNN 102
FSC PP DF++ L+ L + S+ N
Sbjct: 410 FSCPPPDDFTEVLNELHQVTLASNGN 435
>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
pseudourine synthase 2, chloroplastic; AltName: Full=RNA
pseudouridylate synthase 2; AltName: Full=RNA-uridine
isomerase 2; Flags: Precursor gi|53791796|dbj|BAD53590.1|
ribosomal large subunit pseudouridine synthase-like
[Oryza sativa Japonica Group] gi|54291043|dbj|BAD61720.1|
ribosomal large subunit pseudouridine synthase-like
[Oryza sativa Japonica Group]
gi|113596634|dbj|BAF20508.1| Os06g0717400 [Oryza sativa
Japonica Group] gi|215706335|dbj|BAG93191.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|222636236|gb|EEE66368.1| hypothetical protein
OsJ_22675 [Oryza sativa Japonica Group]
Length = 445
Score = 524 bits (1350), Expect = e-146
Identities = 266/386 (68%), Positives = 305/386 (79%), Gaps = 2/386 (0%)
Frame = -1
Query: 1253 RLGHAGLRLDETVEAGSGRSRLDSWISSRFHG--VSRARIQASIRSGLVAVNGRPVEKVS 1080
R GH G RL+E V AG GRSR+D+WIS+R G VSRARIQASIR+GLV VNGRPV KVS
Sbjct: 53 RGGHGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVS 112
Query: 1079 HTVRDGDRVCCTVSELQPLRAEPEDIPLDIVYEDSHVLVVNKPAHMVVHPAPGNANGTLV 900
H V+ GD V CTV ELQPLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNANGTLV
Sbjct: 113 HMVKGGDIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLV 172
Query: 899 NAILHHCRLPTMSCTSKKNXXXXXXXXXXXXXXXXDFHVEPSSTVDISSGNYDAHIRPGI 720
NAILHHC++ T +C ++ + F ++ +T ++SS +A +RPGI
Sbjct: 173 NAILHHCKISTFTCLARNSIDDECPDSSDDDIDV--FDIDQFTTGEVSSEVREALVRPGI 230
Query: 719 VHRLDKGTSGLLVVAKDEDSHAHLAEQFKSHTIRRVYISLTSGVPSPSSGRIEVPIARDP 540
VHRLDKGTSGLLVVAKDE SHA LAEQFK HTIRRVYISLT G P+P+SGRIEVPIARDP
Sbjct: 231 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDP 290
Query: 539 NNRVRMTAVAGSINSKHVRYAASRYKVLEVLANGGSALVQWRLETGRTHQIRAHAKYLGI 360
NNR+RM A GS ++ R+AASRYKV EV A GGSALV+WRLETGRTHQIRAHAKYLGI
Sbjct: 291 NNRIRMIATPGS-GHRYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGI 349
Query: 359 PLLGDEVYGGTKSMALSLLKPRTPSSFHGYLSRMISNLDRPCLHALSLGFKHPHTGEQVQ 180
PLLGDE YGGTKSMALSLL+PRTPS +H LS MIS +DRPCLHA LGFKHPH+G+ ++
Sbjct: 350 PLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILE 409
Query: 179 FSCSPPADFSDALSLLRNINNVSSNN 102
FSC PP DF++ L+ L + S+ N
Sbjct: 410 FSCPPPDDFTEVLNELHQVTLASNGN 435
>gb|ACG41877.1| RNA binding protein [Zea mays]
Length = 439
Score = 523 bits (1348), Expect = e-146
Identities = 263/386 (68%), Positives = 305/386 (79%), Gaps = 2/386 (0%)
Frame = -1
Query: 1247 GHAGLRLDETVEAGSGRSRLDSWISSRFHG--VSRARIQASIRSGLVAVNGRPVEKVSHT 1074
GH G RL+E V G GRSR+D+WIS+R G VSRAR+QASIR+GLVAVNGRPV KVSHT
Sbjct: 53 GHGGTRLEEAVPVGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHT 112
Query: 1073 VRDGDRVCCTVSELQPLRAEPEDIPLDIVYEDSHVLVVNKPAHMVVHPAPGNANGTLVNA 894
V+ GD V CTVSELQPLRAE EDIPLDIVYED HVLVVNKPAHMVVHPAPGNA GTLVNA
Sbjct: 113 VKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNA 172
Query: 893 ILHHCRLPTMSCTSKKNXXXXXXXXXXXXXXXXDFHVEPSSTVDISSGNYDAHIRPGIVH 714
ILHHC++ T +C ++ + FHV+ + D+SS +A +RPGIVH
Sbjct: 173 ILHHCKISTFTCLARSSAGDECPDSSDEDTDV--FHVDQFAAEDVSSEVRNALVRPGIVH 230
Query: 713 RLDKGTSGLLVVAKDEDSHAHLAEQFKSHTIRRVYISLTSGVPSPSSGRIEVPIARDPNN 534
RLDKGTSGLLVVAKDE SHA LAEQFK HTIRRVYISLT G P+P+SGRIE IARDPNN
Sbjct: 231 RLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDPNN 290
Query: 533 RVRMTAVAGSINSKHVRYAASRYKVLEVLANGGSALVQWRLETGRTHQIRAHAKYLGIPL 354
R+RMTA+AGS ++ R AASRYKV EV A GGSALV+WRLETGRTHQIRAHAKY+GIPL
Sbjct: 291 RIRMTAIAGS-GHRYARNAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIPL 349
Query: 353 LGDEVYGGTKSMALSLLKPRTPSSFHGYLSRMISNLDRPCLHALSLGFKHPHTGEQVQFS 174
LGDE YGGT+SMALSLL+PR+PS +H LS ++S +DRPCLHA SLGFKHP +G+ ++FS
Sbjct: 350 LGDETYGGTQSMALSLLRPRSPSKYHSGLSNLLSKVDRPCLHAASLGFKHPRSGKVLEFS 409
Query: 173 CSPPADFSDALSLLRNINNVSSNNGE 96
C PP DF + L LR + + + NG+
Sbjct: 410 CPPPDDFLEVLGELRRVTSSDAPNGD 435
>ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like
[Brachypodium distachyon]
Length = 439
Score = 521 bits (1341), Expect = e-145
Identities = 271/416 (65%), Positives = 314/416 (75%), Gaps = 2/416 (0%)
Frame = -1
Query: 1346 LLRRNPRSRVSNIFCXXXXXXXXXXXXEHRSRLGHAGLRLDETVEAGSGRSRLDSWISSR 1167
LLRRN R S C R R GHAG RL+E V AG GRSR+D+WIS+R
Sbjct: 19 LLRRNTALRASRPRCLSADANVEALPAPSR-RGGHAGTRLEEAVPAGEGRSRVDAWISAR 77
Query: 1166 FHG--VSRARIQASIRSGLVAVNGRPVEKVSHTVRDGDRVCCTVSELQPLRAEPEDIPLD 993
G VSRAR+QASIR+GLVAVNGRPV KVS TV+ GD V CTVSELQPLRAE EDIPLD
Sbjct: 78 LGGGGVSRARVQASIRAGLVAVNGRPVSKVSQTVKGGDTVSCTVSELQPLRAEAEDIPLD 137
Query: 992 IVYEDSHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRLPTMSCTSKKNXXXXXXXXXX 813
IVYED H+LVVNKPAHMVVHPAPGNANGTLVNAILHHC++ T +C ++ +
Sbjct: 138 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNSIDDECPESSD 197
Query: 812 XXXXXXDFHVEPSSTVDISSGNYDAHIRPGIVHRLDKGTSGLLVVAKDEDSHAHLAEQFK 633
F V+ + ++SS DA +RPGIVHRLDKGTSGLLVVAKDE SHA LAEQFK
Sbjct: 198 DDIDV--FDVDQFNG-EVSSEVRDAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 254
Query: 632 SHTIRRVYISLTSGVPSPSSGRIEVPIARDPNNRVRMTAVAGSINSKHVRYAASRYKVLE 453
HTIRR+YISLT GVP+P+S RIEVPI+RDPNNR+RM A GS ++ R+AASRYKV E
Sbjct: 255 LHTIRRIYISLTCGVPNPNSARIEVPISRDPNNRIRMIAAPGS-GHRYARHAASRYKVRE 313
Query: 452 VLANGGSALVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLKPRTPSSFHG 273
V +GGSALV+W+LETGRTHQIRAHAKYLG PLLGDE YGG+KSMALSLL+PRTPS +HG
Sbjct: 314 VFCSGGSALVEWKLETGRTHQIRAHAKYLGYPLLGDETYGGSKSMALSLLRPRTPSRYHG 373
Query: 272 YLSRMISNLDRPCLHALSLGFKHPHTGEQVQFSCSPPADFSDALSLLRNINNVSSN 105
LS +IS +DRPCLHA LGFKHPH+G+ ++FSC PP DF++ L LR + S +
Sbjct: 374 DLSNLISKIDRPCLHAALLGFKHPHSGKMLEFSCPPPDDFAEVLDELRRVTPTSDS 429