BLASTX nr result

ID: Dioscorea21_contig00006241 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00006241
         (464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003558846.1| PREDICTED: U-box domain-containing protein 7...   130   1e-28
ref|XP_002464506.1| hypothetical protein SORBIDRAFT_01g019790 [S...   127   1e-27
ref|NP_001150622.1| pre-mRNA-splicing factor 19 [Zea mays] gi|19...   126   2e-27
ref|XP_003574025.1| PREDICTED: U-box domain-containing protein 7...   125   3e-27
emb|CAN74845.1| hypothetical protein VITISV_037044 [Vitis vinifera]   125   4e-27

>ref|XP_003558846.1| PREDICTED: U-box domain-containing protein 72-like [Brachypodium
           distachyon]
          Length = 527

 Score =  130 bits (326), Expect = 1e-28
 Identities = 62/79 (78%), Positives = 70/79 (88%)
 Frame = +3

Query: 3   GSYLAIAGADVRVYQVANVKQEWNLIKTFPDLSGTGKVTSVKFGGDAKYLAVGSMDRNLR 182
           GSYLA+AG+D+RVYQVANVK EWNL+KT PDLSGTGKVTSVKFG DAKY+AVGSMDRNLR
Sbjct: 449 GSYLAVAGSDIRVYQVANVKMEWNLVKTLPDLSGTGKVTSVKFGTDAKYVAVGSMDRNLR 508

Query: 183 IFALPGDDESGDTKS*KSE 239
           IF LPGD++  + KS  SE
Sbjct: 509 IFGLPGDEQMEEAKSPVSE 527


>ref|XP_002464506.1| hypothetical protein SORBIDRAFT_01g019790 [Sorghum bicolor]
           gi|241918360|gb|EER91504.1| hypothetical protein
           SORBIDRAFT_01g019790 [Sorghum bicolor]
          Length = 535

 Score =  127 bits (318), Expect = 1e-27
 Identities = 59/75 (78%), Positives = 67/75 (89%)
 Frame = +3

Query: 3   GSYLAIAGADVRVYQVANVKQEWNLIKTFPDLSGTGKVTSVKFGGDAKYLAVGSMDRNLR 182
           G+YLAI G+D+RVYQVANVK EWNLIKT PDLSGTGKVTSVKFG DAKY+AVGSMDRNLR
Sbjct: 458 GNYLAIGGSDIRVYQVANVKSEWNLIKTLPDLSGTGKVTSVKFGADAKYIAVGSMDRNLR 517

Query: 183 IFALPGDDESGDTKS 227
           IF LPGDD+  ++ +
Sbjct: 518 IFGLPGDDQMEESNT 532


>ref|NP_001150622.1| pre-mRNA-splicing factor 19 [Zea mays] gi|195640644|gb|ACG39790.1|
           pre-mRNA-splicing factor 19 [Zea mays]
           gi|224030373|gb|ACN34262.1| unknown [Zea mays]
           gi|414871140|tpg|DAA49697.1| TPA: pre-mRNA-splicing
           factor 19 isoform 1 [Zea mays]
           gi|414871141|tpg|DAA49698.1| TPA: pre-mRNA-splicing
           factor 19 isoform 2 [Zea mays]
          Length = 526

 Score =  126 bits (316), Expect = 2e-27
 Identities = 59/69 (85%), Positives = 64/69 (92%)
 Frame = +3

Query: 3   GSYLAIAGADVRVYQVANVKQEWNLIKTFPDLSGTGKVTSVKFGGDAKYLAVGSMDRNLR 182
           G+YLAI G+D+RVYQVANVK EWNLIKT PDLSGTGKVTSVKFG DAKY+AVGSMDRNLR
Sbjct: 449 GNYLAIGGSDIRVYQVANVKAEWNLIKTLPDLSGTGKVTSVKFGADAKYIAVGSMDRNLR 508

Query: 183 IFALPGDDE 209
           IF LPGDD+
Sbjct: 509 IFGLPGDDQ 517


>ref|XP_003574025.1| PREDICTED: U-box domain-containing protein 72-like [Brachypodium
           distachyon]
          Length = 527

 Score =  125 bits (315), Expect = 3e-27
 Identities = 58/72 (80%), Positives = 65/72 (90%)
 Frame = +3

Query: 3   GSYLAIAGADVRVYQVANVKQEWNLIKTFPDLSGTGKVTSVKFGGDAKYLAVGSMDRNLR 182
           GSYLA+AG+D+RVYQVANVK EWNLIKT PDLSGTGKVTS KFG D+KY+AVGSMDRNLR
Sbjct: 449 GSYLAVAGSDIRVYQVANVKTEWNLIKTLPDLSGTGKVTSAKFGADSKYIAVGSMDRNLR 508

Query: 183 IFALPGDDESGD 218
           IF LPG+D+  D
Sbjct: 509 IFGLPGEDQMDD 520


>emb|CAN74845.1| hypothetical protein VITISV_037044 [Vitis vinifera]
          Length = 247

 Score =  125 bits (314), Expect = 4e-27
 Identities = 60/68 (88%), Positives = 62/68 (91%)
 Frame = +3

Query: 3   GSYLAIAGADVRVYQVANVKQEWNLIKTFPDLSGTGKVTSVKFGGDAKYLAVGSMDRNLR 182
           GSYLAIAG+D+RVYQVANVK EWN IKTFPDLSGTGK T VKFG DAKYLAVGSMDRNLR
Sbjct: 175 GSYLAIAGSDIRVYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDAKYLAVGSMDRNLR 234

Query: 183 IFALPGDD 206
           IF LPGDD
Sbjct: 235 IFGLPGDD 242


Top