BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00005496
         (565 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   101   1e-32
emb|CBI24961.3| unnamed protein product [Vitis vinifera]              101   1e-32
ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca...    91   2e-29
ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca...    91   2e-29
ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago t...    93   5e-27

>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  101 bits (252), Expect(2) = 1e-32
 Identities = 50/89 (56%), Positives = 69/89 (77%), Gaps = 2/89 (2%)
 Frame = +3

Query: 297 TGPGCM--QDVIPGPDETRPEVIVGKQLMLQDMEKLLTTLSAREEYIIRLHYGLSGERIH 470
           T  GCM  Q++IPGPDET P+ +V +QLM Q++E+ L TL  RE YI+RL++G++GE   
Sbjct: 326 TSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPL 385

Query: 471 SCEEIGRLLNLSRERIRQIHRTALTRLRE 557
           S EEIGRL+ LSRER+RQI+  AL++LR+
Sbjct: 386 SFEEIGRLMKLSRERVRQINSIALSKLRQ 414



 Score = 63.9 bits (154), Expect(2) = 1e-32
 Identities = 31/68 (45%), Positives = 48/68 (70%)
 Frame = +1

Query: 1   SRLVRQPGSMSAVAKKVADATSLLHRQLGRWPTYHEIADHTALSASRVKLVSDRSKHPIS 180
           SR++R PGS+  +  K+A+A ++L R+L R PTY EIA+   ++ S V+LVS+RS+ PIS
Sbjct: 261 SRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPIS 320

Query: 181 INQPAKYQ 204
           ++Q    Q
Sbjct: 321 VDQAVTSQ 328


>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  101 bits (252), Expect(2) = 1e-32
 Identities = 50/89 (56%), Positives = 69/89 (77%), Gaps = 2/89 (2%)
 Frame = +3

Query: 297 TGPGCM--QDVIPGPDETRPEVIVGKQLMLQDMEKLLTTLSAREEYIIRLHYGLSGERIH 470
           T  GCM  Q++IPGPDET P+ +V +QLM Q++E+ L TL  RE YI+RL++G++GE   
Sbjct: 219 TSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPL 278

Query: 471 SCEEIGRLLNLSRERIRQIHRTALTRLRE 557
           S EEIGRL+ LSRER+RQI+  AL++LR+
Sbjct: 279 SFEEIGRLMKLSRERVRQINSIALSKLRQ 307



 Score = 63.9 bits (154), Expect(2) = 1e-32
 Identities = 31/68 (45%), Positives = 48/68 (70%)
 Frame = +1

Query: 1   SRLVRQPGSMSAVAKKVADATSLLHRQLGRWPTYHEIADHTALSASRVKLVSDRSKHPIS 180
           SR++R PGS+  +  K+A+A ++L R+L R PTY EIA+   ++ S V+LVS+RS+ PIS
Sbjct: 154 SRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPIS 213

Query: 181 INQPAKYQ 204
           ++Q    Q
Sbjct: 214 VDQAVTSQ 221


>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 403

 Score = 91.3 bits (225), Expect(2) = 2e-29
 Identities = 47/82 (57%), Positives = 62/82 (75%)
 Frame = +3

Query: 312 MQDVIPGPDETRPEVIVGKQLMLQDMEKLLTTLSAREEYIIRLHYGLSGERIHSCEEIGR 491
           ++++IPGP E  PE +V +QLM Q + KLL TL  REE I+RL++GL+GE   S EEIG+
Sbjct: 310 LKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGK 369

Query: 492 LLNLSRERIRQIHRTALTRLRE 557
           LL LSRERIRQIH  AL++L +
Sbjct: 370 LLKLSRERIRQIHGIALSKLEQ 391



 Score = 63.2 bits (152), Expect(2) = 2e-29
 Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1   SRLVRQPGSMSAVAKKVADATSLLHRQLGRWPTYHEIADHTALSASRVKLVSDRSKHPIS 180
           SRL+R PG    +  K+A+A ++L R+L R PTY+EIA+   ++ S VKLVS+RS+ PIS
Sbjct: 238 SRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPIS 297

Query: 181 INQPAKYQ-ELILEVI 225
           +++    Q  LIL+ I
Sbjct: 298 LDRSITDQSNLILKEI 313


>ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488489|gb|AES69692.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 267

 Score = 91.3 bits (225), Expect(2) = 2e-29
 Identities = 47/82 (57%), Positives = 62/82 (75%)
 Frame = +3

Query: 312 MQDVIPGPDETRPEVIVGKQLMLQDMEKLLTTLSAREEYIIRLHYGLSGERIHSCEEIGR 491
           ++++IPGP E  PE +V +QLM Q + KLL TL  REE I+RL++GL+GE   S EEIG+
Sbjct: 174 LKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGK 233

Query: 492 LLNLSRERIRQIHRTALTRLRE 557
           LL LSRERIRQIH  AL++L +
Sbjct: 234 LLKLSRERIRQIHGIALSKLEQ 255



 Score = 63.2 bits (152), Expect(2) = 2e-29
 Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1   SRLVRQPGSMSAVAKKVADATSLLHRQLGRWPTYHEIADHTALSASRVKLVSDRSKHPIS 180
           SRL+R PG    +  K+A+A ++L R+L R PTY+EIA+   ++ S VKLVS+RS+ PIS
Sbjct: 102 SRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPIS 161

Query: 181 INQPAKYQ-ELILEVI 225
           +++    Q  LIL+ I
Sbjct: 162 LDRSITDQSNLILKEI 177


>ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
           gi|355488477|gb|AES69680.1| RNA polymerase sigma factor
           rpoD [Medicago truncatula]
          Length = 185

 Score = 93.2 bits (230), Expect(2) = 5e-27
 Identities = 48/82 (58%), Positives = 63/82 (76%)
 Frame = +3

Query: 312 MQDVIPGPDETRPEVIVGKQLMLQDMEKLLTTLSAREEYIIRLHYGLSGERIHSCEEIGR 491
           ++++IPGP E  PE +V +QLM Q + KLL TL  REE I+RL++GL+GE   S EEIG+
Sbjct: 92  LKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGK 151

Query: 492 LLNLSRERIRQIHRTALTRLRE 557
           LL LSRERIRQIH  AL++LR+
Sbjct: 152 LLKLSRERIRQIHGIALSKLRQ 173



 Score = 53.1 bits (126), Expect(2) = 5e-27
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
 Frame = +1

Query: 22  GSMSAVAKKVADATSLLHRQLGRWPTYHEIADHTALSASRVKLVSDRSKHPISINQPAKY 201
           G    +  K+A+A ++L R+L R PTY+EIA+   ++ S VKLVS+RS+ PIS+++    
Sbjct: 27  GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 86

Query: 202 Q-ELILEVI 225
           Q  LIL+ I
Sbjct: 87  QSNLILKEI 95