BLASTX nr result
ID: Dioscorea21_contig00004939
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00004939
(241 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002515553.1| pentatricopeptide repeat-containing protein,... 98 8e-19
ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containi... 97 1e-18
ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containi... 97 1e-18
ref|NP_181456.1| lateral organ junction protein [Arabidopsis tha... 97 1e-18
ref|NP_191058.1| pentatricopeptide repeat-containing protein [Ar... 93 3e-17
>ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545497|gb|EEF47002.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 927
Score = 97.8 bits (242), Expect = 8e-19
Identities = 47/80 (58%), Positives = 61/80 (76%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
Y ALI G C + ++++A LF EL GL PN+VI+NSLI+GY+N+NNMEAA+ L +RM
Sbjct: 666 YGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRML 725
Query: 181 VQGIPCDIATYTTLIDGSLK 240
+GI CD+ TYTTLIDG LK
Sbjct: 726 GEGISCDLQTYTTLIDGLLK 745
Score = 63.9 bits (154), Expect = 1e-08
Identities = 29/80 (36%), Positives = 49/80 (61%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
YN+++ G EG++ SAL+ + E+ + G+ PN + + +LI G+ NN + A+++ M
Sbjct: 596 YNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMR 655
Query: 181 VQGIPCDIATYTTLIDGSLK 240
+G+ DIA Y LIDG K
Sbjct: 656 NKGLELDIAAYGALIDGFCK 675
Score = 61.6 bits (148), Expect = 6e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
Y LI GLC +G +++A + E+ + + PN I+N+LI G+ N++ A LH M
Sbjct: 771 YTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEML 830
Query: 181 VQGIPCDIATYTTLIDGSLK 240
+G+ + TY LI+G +K
Sbjct: 831 DKGLTPNDTTYDILINGKIK 850
Score = 57.0 bits (136), Expect = 2e-06
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
YN+L+ LC EG M A +L+ ++ GL P V +NS+I G+ N++ A + M
Sbjct: 456 YNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDML 515
Query: 181 VQGIPCDIATYTTLIDGSLK 240
G+ ++ TY+ L+DG K
Sbjct: 516 DCGLKPNVITYSILMDGYFK 535
Score = 55.8 bits (133), Expect = 3e-06
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
YN I GLC G A + + + G P + +NS++ G+ ++ +A+ +R MC
Sbjct: 561 YNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMC 620
Query: 181 VQGIPCDIATYTTLIDGSLK 240
G+ ++ TYTTLI+G K
Sbjct: 621 ESGVSPNVITYTTLINGFCK 640
>ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 657
Score = 97.4 bits (241), Expect = 1e-18
Identities = 46/80 (57%), Positives = 59/80 (73%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
Y LI G C +MKSA L +EL GL PN I+NS+ITG+KNMNN+E AI+L+++M
Sbjct: 462 YGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMV 521
Query: 181 VQGIPCDIATYTTLIDGSLK 240
+GIPCD+ TYT+LIDG LK
Sbjct: 522 NEGIPCDLKTYTSLIDGLLK 541
Score = 63.2 bits (152), Expect = 2e-08
Identities = 29/80 (36%), Positives = 48/80 (60%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
+N L+ LC EG M A +L+DE+ G+ PN V +N++I G+ +N+ AA ++++ M
Sbjct: 252 FNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEML 311
Query: 181 VQGIPCDIATYTTLIDGSLK 240
G + T+T L+DG K
Sbjct: 312 DNGFTPNAVTFTILMDGYFK 331
Score = 61.6 bits (148), Expect = 6e-08
Identities = 31/80 (38%), Positives = 48/80 (60%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
YN +I G EGN+ A +++ E+ + G+ P+ V + SLI G+ NN++ A++L M
Sbjct: 392 YNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMK 451
Query: 181 VQGIPCDIATYTTLIDGSLK 240
+G+ DI Y TLIDG K
Sbjct: 452 RKGLKMDIKAYGTLIDGFCK 471
Score = 57.4 bits (137), Expect = 1e-06
Identities = 28/78 (35%), Positives = 47/78 (60%)
Frame = +1
Query: 7 ALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMCVQ 186
+L+ G C +GN++SAL L +E+ + GL PN V ++ LI G N+E A E + M +
Sbjct: 150 SLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTK 209
Query: 187 GIPCDIATYTTLIDGSLK 240
GI + + ++++G LK
Sbjct: 210 GIRSSVYSLNSILEGYLK 227
Score = 55.1 bits (131), Expect = 6e-06
Identities = 25/80 (31%), Positives = 46/80 (57%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
+ LI GLC++G ++A + +++ + P+ +I+N+LI G+ N++ A LH M
Sbjct: 567 HTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEML 626
Query: 181 VQGIPCDIATYTTLIDGSLK 240
+G+ D TY L++G K
Sbjct: 627 DRGLVPDNITYDILVNGKFK 646
>ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 775
Score = 97.4 bits (241), Expect = 1e-18
Identities = 46/80 (57%), Positives = 59/80 (73%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
Y LI G C +MKSA L +EL GL PN I+NS+ITG+KNMNN+E AI+L+++M
Sbjct: 580 YGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMV 639
Query: 181 VQGIPCDIATYTTLIDGSLK 240
+GIPCD+ TYT+LIDG LK
Sbjct: 640 NEGIPCDLKTYTSLIDGLLK 659
Score = 63.2 bits (152), Expect = 2e-08
Identities = 29/80 (36%), Positives = 48/80 (60%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
+N L+ LC EG M A +L+DE+ G+ PN V +N++I G+ +N+ AA ++++ M
Sbjct: 370 FNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEML 429
Query: 181 VQGIPCDIATYTTLIDGSLK 240
G + T+T L+DG K
Sbjct: 430 DNGFTPNAVTFTILMDGYFK 449
Score = 61.6 bits (148), Expect = 6e-08
Identities = 31/80 (38%), Positives = 48/80 (60%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
YN +I G EGN+ A +++ E+ + G+ P+ V + SLI G+ NN++ A++L M
Sbjct: 510 YNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMK 569
Query: 181 VQGIPCDIATYTTLIDGSLK 240
+G+ DI Y TLIDG K
Sbjct: 570 RKGLKMDIKAYGTLIDGFCK 589
Score = 57.4 bits (137), Expect = 1e-06
Identities = 28/78 (35%), Positives = 47/78 (60%)
Frame = +1
Query: 7 ALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMCVQ 186
+L+ G C +GN++SAL L +E+ + GL PN V ++ LI G N+E A E + M +
Sbjct: 268 SLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTK 327
Query: 187 GIPCDIATYTTLIDGSLK 240
GI + + ++++G LK
Sbjct: 328 GIRSSVYSLNSILEGYLK 345
Score = 55.1 bits (131), Expect = 6e-06
Identities = 25/80 (31%), Positives = 46/80 (57%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
+ LI GLC++G ++A + +++ + P+ +I+N+LI G+ N++ A LH M
Sbjct: 685 HTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEML 744
Query: 181 VQGIPCDIATYTTLIDGSLK 240
+G+ D TY L++G K
Sbjct: 745 DRGLVPDNITYDILVNGKFK 764
>ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
gi|75100007|sp|O80958.1|PP194_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g39230, mitochondrial; AltName: Full=Protein LATERAL
ORGAN JUNCTION; Flags: Precursor
gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis
thaliana] gi|330254554|gb|AEC09648.1| lateral organ
junction protein [Arabidopsis thaliana]
Length = 867
Score = 97.4 bits (241), Expect = 1e-18
Identities = 43/80 (53%), Positives = 61/80 (76%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
Y ALI G C + +MK+A +LF ELP+ GL PN ++NSLI+G++N+ M+AAI+L+++M
Sbjct: 663 YGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMV 722
Query: 181 VQGIPCDIATYTTLIDGSLK 240
GI CD+ TYTT+IDG LK
Sbjct: 723 NDGISCDLFTYTTMIDGLLK 742
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/80 (36%), Positives = 42/80 (52%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
YN++I G G+ SA+ + E+ + G PN V F SLI G+ N M+ A+E+ M
Sbjct: 593 YNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMK 652
Query: 181 VQGIPCDIATYTTLIDGSLK 240
+ D+ Y LIDG K
Sbjct: 653 SMELKLDLPAYGALIDGFCK 672
>ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g54980, mitochondrial; Flags: Precursor
gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis
thaliana] gi|28393168|gb|AAO42016.1| unknown protein
[Arabidopsis thaliana] gi|332645801|gb|AEE79322.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 851
Score = 92.8 bits (229), Expect = 3e-17
Identities = 43/80 (53%), Positives = 59/80 (73%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
Y ALI G C NM+SA +LF EL + GL P+ I+NSLI+G++N+ NM AA++L+++M
Sbjct: 657 YGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKML 716
Query: 181 VQGIPCDIATYTTLIDGSLK 240
G+ CD+ TYTTLIDG LK
Sbjct: 717 KDGLRCDLGTYTTLIDGLLK 736
Score = 62.4 bits (150), Expect = 4e-08
Identities = 30/80 (37%), Positives = 46/80 (57%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
YN++I G EG M SA++ ++E+ G+ PN + + SL+ G N M+ A+E+ M
Sbjct: 587 YNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMK 646
Query: 181 VQGIPCDIATYTTLIDGSLK 240
+G+ DI Y LIDG K
Sbjct: 647 NKGVKLDIPAYGALIDGFCK 666
Score = 57.4 bits (137), Expect = 1e-06
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = +1
Query: 7 ALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMCVQ 186
+LI G C ++ SAL LFD++ K G PN+V F+ LI ++ ME A+E +++M V
Sbjct: 344 SLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVL 403
Query: 187 GIPCDIATYTTLIDGSLK 240
G+ + T+I G LK
Sbjct: 404 GLTPSVFHVHTIIQGWLK 421
Score = 56.2 bits (134), Expect = 3e-06
Identities = 25/79 (31%), Positives = 44/79 (55%)
Frame = +1
Query: 1 YNALIVGLCSEGNMKSALSLFDELPKFGLEPNAVIFNSLITGYKNMNNMEAAIELHRRMC 180
Y ++ GL +G + +F+E+ K + PN +I+N++I G+ N++ A LH M
Sbjct: 762 YTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEML 821
Query: 181 VQGIPCDIATYTTLIDGSL 237
+GI D AT+ L+ G +
Sbjct: 822 DKGILPDGATFDILVSGQV 840