BLASTX nr result

ID: Dioscorea21_contig00004715 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00004715
         (668 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI18223.3| unnamed protein product [Vitis vinifera]              329   3e-88
ref|XP_002265125.1| PREDICTED: 60S ribosomal protein L3-like [Vi...   329   3e-88
emb|CAN63848.1| hypothetical protein VITISV_039858 [Vitis vinifera]   325   6e-87
gb|ABK23172.1| unknown [Picea sitchensis]                             323   2e-86
gb|ABK26048.1| unknown [Picea sitchensis] gi|224285374|gb|ACN404...   323   2e-86

>emb|CBI18223.3| unnamed protein product [Vitis vinifera]
          Length = 449

 Score =  329 bits (844), Expect = 3e-88
 Identities = 161/204 (78%), Positives = 177/204 (86%)
 Frame = -1

Query: 614 LEEAGGRRMSHRKFEHPRHGSLGFLPRKRSSRHRGKVKAFPRDDPSKPCKLTAFLGYKAG 435
           +E    RRMSHRKFEHPRHGSLGFLPRKR++RHRGKVKAFP+DDPSKPC+LTAFLGYKAG
Sbjct: 53  MENLRRRRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAG 112

Query: 434 MTHIVREVDKPGSKLHKKETCEAVTIVETPPMXXXXXXXXVKTPHGLRSLNTVWAQHLSE 255
           MTHIVREV+KPGSKLHKKETCEAVTIVETPPM        VKTP GLRSLNTVWAQHLSE
Sbjct: 113 MTHIVREVEKPGSKLHKKETCEAVTIVETPPMVIVGVVAYVKTPRGLRSLNTVWAQHLSE 172

Query: 254 EVKRRFYKNWYRAKRTAFKSYSKKFESDEGKKEIQSQLEKMKKYASVVRVLAHTQIXXXX 75
           EVKRRFYKNW ++K+ AF  YSK++E++EGKK IQ+QLEKMKKYASV+RVLAHTQI    
Sbjct: 173 EVKRRFYKNWCKSKKKAFTKYSKQYETEEGKKSIQAQLEKMKKYASVIRVLAHTQIRKMK 232

Query: 74  XXXXXKAHLMEIQVNGGTIAEKVD 3
                KAHLMEIQVNGGTIA+KVD
Sbjct: 233 GLKQKKAHLMEIQVNGGTIAQKVD 256


>ref|XP_002265125.1| PREDICTED: 60S ribosomal protein L3-like [Vitis vinifera]
          Length = 397

 Score =  329 bits (844), Expect = 3e-88
 Identities = 161/204 (78%), Positives = 177/204 (86%)
 Frame = -1

Query: 614 LEEAGGRRMSHRKFEHPRHGSLGFLPRKRSSRHRGKVKAFPRDDPSKPCKLTAFLGYKAG 435
           +E    RRMSHRKFEHPRHGSLGFLPRKR++RHRGKVKAFP+DDPSKPC+LTAFLGYKAG
Sbjct: 1   MENLRRRRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAG 60

Query: 434 MTHIVREVDKPGSKLHKKETCEAVTIVETPPMXXXXXXXXVKTPHGLRSLNTVWAQHLSE 255
           MTHIVREV+KPGSKLHKKETCEAVTIVETPPM        VKTP GLRSLNTVWAQHLSE
Sbjct: 61  MTHIVREVEKPGSKLHKKETCEAVTIVETPPMVIVGVVAYVKTPRGLRSLNTVWAQHLSE 120

Query: 254 EVKRRFYKNWYRAKRTAFKSYSKKFESDEGKKEIQSQLEKMKKYASVVRVLAHTQIXXXX 75
           EVKRRFYKNW ++K+ AF  YSK++E++EGKK IQ+QLEKMKKYASV+RVLAHTQI    
Sbjct: 121 EVKRRFYKNWCKSKKKAFTKYSKQYETEEGKKSIQAQLEKMKKYASVIRVLAHTQIRKMK 180

Query: 74  XXXXXKAHLMEIQVNGGTIAEKVD 3
                KAHLMEIQVNGGTIA+KVD
Sbjct: 181 GLKQKKAHLMEIQVNGGTIAQKVD 204


>emb|CAN63848.1| hypothetical protein VITISV_039858 [Vitis vinifera]
          Length = 389

 Score =  325 bits (832), Expect = 6e-87
 Identities = 158/196 (80%), Positives = 173/196 (88%)
 Frame = -1

Query: 590 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKAFPRDDPSKPCKLTAFLGYKAGMTHIVREV 411
           MSHRKFEHPRHGSLGFLPRKR++RHRGKVKAFP+DDPSKPC+LTAFLGYKAGMTHIVREV
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVREV 60

Query: 410 DKPGSKLHKKETCEAVTIVETPPMXXXXXXXXVKTPHGLRSLNTVWAQHLSEEVKRRFYK 231
           +KPGSKLHKKETCEAVTIVETPPM        VKTP GLRSLNTVWAQHLSEEVKRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIVETPPMVIVGVVAYVKTPRGLRSLNTVWAQHLSEEVKRRFYK 120

Query: 230 NWYRAKRTAFKSYSKKFESDEGKKEIQSQLEKMKKYASVVRVLAHTQIXXXXXXXXXKAH 51
           NW ++K+ AF  YSK++E++EGKK IQ+QLEKMKKYASV+RVLAHTQI         KAH
Sbjct: 121 NWCKSKKKAFTKYSKQYETEEGKKSIQAQLEKMKKYASVIRVLAHTQIRKMKGLKQKKAH 180

Query: 50  LMEIQVNGGTIAEKVD 3
           LMEIQVNGGTIA+KVD
Sbjct: 181 LMEIQVNGGTIAQKVD 196


>gb|ABK23172.1| unknown [Picea sitchensis]
          Length = 389

 Score =  323 bits (828), Expect = 2e-86
 Identities = 153/196 (78%), Positives = 172/196 (87%)
 Frame = -1

Query: 590 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKAFPRDDPSKPCKLTAFLGYKAGMTHIVREV 411
           MSHRKFEHPRHGSLGFLPRKR+ RHRGKVK+FPRDDPSKPCKLTAFLGYKAGMTHIVREV
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHIVREV 60

Query: 410 DKPGSKLHKKETCEAVTIVETPPMXXXXXXXXVKTPHGLRSLNTVWAQHLSEEVKRRFYK 231
           +KPGSKLHKKETCEAVT++ETPPM        +KTP GLR+LN VWAQHLSEEV+RRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTLIETPPMVIVGVVGYIKTPRGLRTLNAVWAQHLSEEVRRRFYK 120

Query: 230 NWYRAKRTAFKSYSKKFESDEGKKEIQSQLEKMKKYASVVRVLAHTQIXXXXXXXXXKAH 51
           NWYRAK+ AF  Y+KK++S+EGKKEIQ++LEKMKKYA+V+RVLAHTQI         KAH
Sbjct: 121 NWYRAKKKAFTKYAKKYDSEEGKKEIQTELEKMKKYATVIRVLAHTQIKKMKGLKQNKAH 180

Query: 50  LMEIQVNGGTIAEKVD 3
           LMEIQVNGGT+ +KVD
Sbjct: 181 LMEIQVNGGTVPQKVD 196


>gb|ABK26048.1| unknown [Picea sitchensis] gi|224285374|gb|ACN40410.1| unknown
           [Picea sitchensis]
          Length = 389

 Score =  323 bits (827), Expect = 2e-86
 Identities = 153/196 (78%), Positives = 173/196 (88%)
 Frame = -1

Query: 590 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKAFPRDDPSKPCKLTAFLGYKAGMTHIVREV 411
           MSHRKFEHPRHGSLGFLPRKR+ RHRGKVK+FPRDD SKPCKLTAFLGYKAGMTHIVREV
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDQSKPCKLTAFLGYKAGMTHIVREV 60

Query: 410 DKPGSKLHKKETCEAVTIVETPPMXXXXXXXXVKTPHGLRSLNTVWAQHLSEEVKRRFYK 231
           +KPGSKLHKKETCEAVT++ETPPM        +KTP GLR+LNTVWAQHLSEEV+RRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYK 120

Query: 230 NWYRAKRTAFKSYSKKFESDEGKKEIQSQLEKMKKYASVVRVLAHTQIXXXXXXXXXKAH 51
           NWYRAK+ AF  Y+KK++S+EGKK+IQ++LEKMKKYA+V+RVLAHTQI         KAH
Sbjct: 121 NWYRAKKKAFTKYAKKYDSEEGKKDIQTELEKMKKYATVIRVLAHTQIKKMKGLKQKKAH 180

Query: 50  LMEIQVNGGTIAEKVD 3
           LMEIQVNGGT+A+KVD
Sbjct: 181 LMEIQVNGGTVAQKVD 196


Top