BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00004472
         (969 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ34231.1| unnamed protein product [Thellungiella halophila]      65   3e-08
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165...    62   2e-07
dbj|BAA78111.1| RNA polymerase sigma subunit SigD* [Arabidopsis ...    62   2e-07
ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [...    59   2e-06
emb|CBI24961.3| unnamed protein product [Vitis vinifera]               59   2e-06

>dbj|BAJ34231.1| unnamed protein product [Thellungiella halophila]
          Length = 269

 Score = 64.7 bits (156), Expect = 3e-08
 Identities = 33/52 (63%), Positives = 39/52 (75%)
 Frame = -3

Query: 157 STGCRTKKRSDEKVLLRARECRERITLSYKRLVASIATPYQGKGLSFQDLIQ 2
           S+G   KKRS  ++L R RE RE+IT  Y+RLV SIAT YQGKGL+ QDLIQ
Sbjct: 161 SSGKGKKKRSANEILCRRREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQ 212


>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
           gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
           polymerase sigma factor sigD, chloroplastic; Short=Sigma
           factor D; Short=Sigma-D; AltName: Full=RNA polymerase
           sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
           Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
           factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
           RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
           gi|9758039|dbj|BAB08700.1| sigma-like factor
           [Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
           factor 4 [Arabidopsis thaliana]
          Length = 419

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 31/52 (59%), Positives = 39/52 (75%)
 Frame = -3

Query: 157 STGCRTKKRSDEKVLLRARECRERITLSYKRLVASIATPYQGKGLSFQDLIQ 2
           ++G   KKRS  ++L R +E RE+IT  Y+RLV SIAT YQGKGL+ QDLIQ
Sbjct: 159 ASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQ 210


>dbj|BAA78111.1| RNA polymerase sigma subunit SigD* [Arabidopsis thaliana]
           gi|16649075|gb|AAL24389.1| sigma-like factor
           [Arabidopsis thaliana] gi|21387209|gb|AAM48008.1|
           sigma-like factor [Arabidopsis thaliana]
          Length = 267

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 31/52 (59%), Positives = 39/52 (75%)
 Frame = -3

Query: 157 STGCRTKKRSDEKVLLRARECRERITLSYKRLVASIATPYQGKGLSFQDLIQ 2
           ++G   KKRS  ++L R +E RE+IT  Y+RLV SIAT YQGKGL+ QDLIQ
Sbjct: 159 ASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQ 210


>ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223543041|gb|EEF44576.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 389

 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 28/48 (58%), Positives = 38/48 (79%)
 Frame = -3

Query: 145 RTKKRSDEKVLLRARECRERITLSYKRLVASIATPYQGKGLSFQDLIQ 2
           R +K++ +K+L + R+ RERIT +Y+RLV SIA  Y+GKGLS QDLIQ
Sbjct: 160 RMRKKNVDKILCKGRQSRERITGNYRRLVLSIANRYRGKGLSLQDLIQ 207


>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 30/46 (65%), Positives = 34/46 (73%)
 Frame = -3

Query: 139 KKRSDEKVLLRARECRERITLSYKRLVASIATPYQGKGLSFQDLIQ 2
           K+ S +K+L   RE RERI  SY+RLV SIA  YQGKGLS QDLIQ
Sbjct: 68  KRSSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQ 113