BLASTX nr result

ID: Dioscorea21_contig00004265 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00004265
         (251 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002329763.1| predicted protein [Populus trichocarpa] gi|2...    84   9e-15
ref|XP_002267987.2| PREDICTED: RNA polymerase II C-terminal doma...    79   3e-13
emb|CBI35689.3| unnamed protein product [Vitis vinifera]               79   3e-13
ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|2...    79   3e-13
emb|CAN72816.1| hypothetical protein VITISV_004100 [Vitis vinifera]    79   3e-13

>ref|XP_002329763.1| predicted protein [Populus trichocarpa] gi|222870825|gb|EEF07956.1|
           predicted protein [Populus trichocarpa]
          Length = 224

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 43/80 (53%), Positives = 54/80 (67%)
 Frame = -2

Query: 241 LSANSDSIGEINAQVEVAGQILGKGIGTTWXXXXXXXXXXXXXXLKSMLGQFTQKRLGSP 62
           LSANS    E++AQVE+ GQ+LGKGIG+TW              L++M GQ+TQKR GSP
Sbjct: 129 LSANSIPGEEVHAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRTMFGQYTQKRQGSP 188

Query: 61  RSLHSVPNKRLKAEFSRVVQ 2
           R +  +PNKRLK EF RV+Q
Sbjct: 189 RPMQGMPNKRLKQEFPRVLQ 208


>ref|XP_002267987.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1
            [Vitis vinifera]
          Length = 860

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 45/82 (54%), Positives = 54/82 (65%)
 Frame = -2

Query: 247  PSLSANSDSIGEINAQVEVAGQILGKGIGTTWXXXXXXXXXXXXXXLKSMLGQFTQKRLG 68
            P LS+NS    EI AQVE+ GQ+LGKG G+TW              LKSMLGQF+QKR G
Sbjct: 764  PPLSSNSTQKEEICAQVEIDGQVLGKGTGSTWDDAKMQAAEKALGSLKSMLGQFSQKRQG 823

Query: 67   SPRSLHSVPNKRLKAEFSRVVQ 2
            SPRSL  +  KRLK+EF+R +Q
Sbjct: 824  SPRSLQGM-GKRLKSEFTRGLQ 844


>emb|CBI35689.3| unnamed protein product [Vitis vinifera]
          Length = 160

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 45/82 (54%), Positives = 54/82 (65%)
 Frame = -2

Query: 247 PSLSANSDSIGEINAQVEVAGQILGKGIGTTWXXXXXXXXXXXXXXLKSMLGQFTQKRLG 68
           P LS+NS    EI AQVE+ GQ+LGKG G+TW              LKSMLGQF+QKR G
Sbjct: 64  PPLSSNSTQKEEICAQVEIDGQVLGKGTGSTWDDAKMQAAEKALGSLKSMLGQFSQKRQG 123

Query: 67  SPRSLHSVPNKRLKAEFSRVVQ 2
           SPRSL  +  KRLK+EF+R +Q
Sbjct: 124 SPRSLQGM-GKRLKSEFTRGLQ 144


>ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|222847981|gb|EEE85528.1|
            predicted protein [Populus trichocarpa]
          Length = 967

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 41/80 (51%), Positives = 51/80 (63%)
 Frame = -2

Query: 241  LSANSDSIGEINAQVEVAGQILGKGIGTTWXXXXXXXXXXXXXXLKSMLGQFTQKRLGSP 62
            LS NS    E++AQVE+ GQ+LGKGIG TW              L++M GQ+T KR GSP
Sbjct: 872  LSTNSIPGEEVHAQVEIDGQVLGKGIGLTWDEAKMQAAEKALGSLRTMFGQYTPKRQGSP 931

Query: 61   RSLHSVPNKRLKAEFSRVVQ 2
            R +  +PNKRLK EF RV+Q
Sbjct: 932  RLMQGMPNKRLKQEFPRVLQ 951


>emb|CAN72816.1| hypothetical protein VITISV_004100 [Vitis vinifera]
          Length = 894

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 45/82 (54%), Positives = 54/82 (65%)
 Frame = -2

Query: 247  PSLSANSDSIGEINAQVEVAGQILGKGIGTTWXXXXXXXXXXXXXXLKSMLGQFTQKRLG 68
            P LS+NS    EI AQVE+ GQ+LGKG G+TW              LKSMLGQF+QKR G
Sbjct: 798  PPLSSNSTQKEEICAQVEIDGQVLGKGTGSTWDDAKMQAAEKALGSLKSMLGQFSQKRQG 857

Query: 67   SPRSLHSVPNKRLKAEFSRVVQ 2
            SPRSL  +  KRLK+EF+R +Q
Sbjct: 858  SPRSLQGM-GKRLKSEFTRGLQ 878


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