BLASTX nr result
ID: Dioscorea21_contig00004162
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00004162
(1605 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2... 375 e-134
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [... 375 e-133
dbj|BAA88921.1| sigma factor [Nicotiana tabacum] 383 e-132
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-... 367 e-126
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-... 375 e-126
>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
predicted protein [Populus trichocarpa]
Length = 509
Score = 375 bits (962), Expect(3) = e-134
Identities = 184/299 (61%), Positives = 240/299 (80%)
Frame = -1
Query: 1116 RSSLNQNDQMIRSNKRKQIHSIISPELLQTHLNGYVKGKVSEDLLPHDEVAQLSKKIKLG 937
R + NQ+ M +S+ K + S+ SP+LLQ L GYVKG VS+++LPH EV +LS+ I+ G
Sbjct: 163 RKNQNQSKFMSQSSDFKFLRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAG 222
Query: 936 LMLEKHKARLKKRLGFEPSDNELASSLRISPTKLRLMLLECSLARERLAMKNIRLVMSIA 757
L E HK+RLK+RLG EPSD ++A SLRIS L+ L++CSLARE+LAM N+RLVMSIA
Sbjct: 223 LSFEDHKSRLKERLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIA 282
Query: 756 QKYNNVGPDMADLVQGGLIGLLRGIEKFDPSKGFKISTYVYWWIRQGVLKVLFLNSKTVR 577
QKY+N+G +MADLVQGGLIGLLRGIEKFD SKGFKISTYVYWWIRQGV + L NS+T+R
Sbjct: 283 QKYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLR 342
Query: 576 LPRYLCERLISIRNAKVKLKRQGITPSVDSLADYLNMSERKVENATQADRMMISFEKEAF 397
LP +L ERL IRNAK++L+ +G+TPS+D +A+ LNMS+RKV NAT+A + S ++EAF
Sbjct: 343 LPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAF 402
Query: 396 PSLNGRPGKTLHSYVADNNLENSPWQGFEDGYLKDEVNRLLLTTLSKREQDIVRLYHGV 220
PSLNG PG+T HSY+ADN EN+PW G ++ LK+EVN+L+ +TL +RE++I+RLYHG+
Sbjct: 403 PSLNGLPGETHHSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGL 461
Score = 105 bits (261), Expect(3) = e-134
Identities = 64/162 (39%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Frame = -2
Query: 1592 MMATAIVAGLSMGRKFSCTPSLSTDTIDKVLSIQGYGLPQLSGASSKNSTAAKMSSDLHS 1413
MMATA V GLS G++ + +D +K+ ++ +G+ A++KN AK SS+
Sbjct: 1 MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60
Query: 1412 GIP-VNKRLPAPKALAQHEDTSLSLTTKANWFSNYDRVEESDPDLS-SWHDLIVFQKSML 1239
P N+ + KAL +H DT+ + + A WF +D EE L S L++ QKSML
Sbjct: 61 SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120
Query: 1238 EKQWKLSFNQT-ATTAAPEENNKKRVIMGSGVSARQRRRSTR 1116
EKQW LSF +T ++ + ++NNKK + SGVSARQRR + R
Sbjct: 121 EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNR 162
Score = 49.3 bits (116), Expect(3) = e-134
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = -2
Query: 137 WEDIGKHYGLSRERVRQVGLVAFXXXXXXXXXQRMEALLVKH 12
WEDI K GLSRERVRQVGLVA + EA+LVKH
Sbjct: 468 WEDISKRMGLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509
>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 508
Score = 375 bits (962), Expect(3) = e-133
Identities = 184/299 (61%), Positives = 242/299 (80%)
Frame = -1
Query: 1116 RSSLNQNDQMIRSNKRKQIHSIISPELLQTHLNGYVKGKVSEDLLPHDEVAQLSKKIKLG 937
R +L+Q+ +++N KQ+ S +SPELLQ L GYVKG VSE+LL H EV +LS+ IK G
Sbjct: 162 RKNLSQSKFTVQANVFKQLKSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAG 221
Query: 936 LMLEKHKARLKKRLGFEPSDNELASSLRISPTKLRLMLLECSLARERLAMKNIRLVMSIA 757
L LE HK+RLK+RLG +PSD ++A+SL+IS +L+ + CSLARE+LAM N+RLVMSIA
Sbjct: 222 LSLEDHKSRLKERLGCDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIA 281
Query: 756 QKYNNVGPDMADLVQGGLIGLLRGIEKFDPSKGFKISTYVYWWIRQGVLKVLFLNSKTVR 577
Q+Y+N+G +MADLVQGGLIGLLRGIEKFD SKGF+ISTYVYWWIRQGV + L NS+T+R
Sbjct: 282 QRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLR 341
Query: 576 LPRYLCERLISIRNAKVKLKRQGITPSVDSLADYLNMSERKVENATQADRMMISFEKEAF 397
LP +L ERL IRNAK++L+ +G+TPS+D +A+ LN+S++KV NAT+A + S ++EAF
Sbjct: 342 LPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAF 401
Query: 396 PSLNGRPGKTLHSYVADNNLENSPWQGFEDGYLKDEVNRLLLTTLSKREQDIVRLYHGV 220
PSLNG PG+T HSY+ADN LEN+PW G +D LKDEVN+L+ TL +REQ+I+RLY+G+
Sbjct: 402 PSLNGLPGETHHSYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGL 460
Score = 99.0 bits (245), Expect(3) = e-133
Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 3/161 (1%)
Frame = -2
Query: 1589 MATAIVAGLSMGRKFSCTPSLSTDTIDKVLSIQGYGLPQLSGASSKNSTAAKMSSDLHSG 1410
MATA V GLS G++ + +D +K+ S +GL S+K AK SS+
Sbjct: 1 MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60
Query: 1409 IPV-NKRLPAPKALAQHEDTSLSLTTKANWFSNYDRVEESDPDLS-SWHDLIVFQKSMLE 1236
P N+ + KAL +H DT+ + +T A F ++ +EE DL S L++ QKSMLE
Sbjct: 61 FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120
Query: 1235 KQWKLSFNQTATTAAPEENNKKRV-IMGSGVSARQRRRSTR 1116
KQW LSF +T ++ +P ++K++ + SGVSARQRR + R
Sbjct: 121 KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIR 161
Score = 51.2 bits (121), Expect(3) = e-133
Identities = 25/42 (59%), Positives = 29/42 (69%)
Frame = -2
Query: 137 WEDIGKHYGLSRERVRQVGLVAFXXXXXXXXXQRMEALLVKH 12
WEDI K GLSRERVRQVGLVA +++EA+LVKH
Sbjct: 467 WEDISKRIGLSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508
>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
Length = 508
Score = 383 bits (984), Expect(3) = e-132
Identities = 192/296 (64%), Positives = 241/296 (81%)
Frame = -1
Query: 1107 LNQNDQMIRSNKRKQIHSIISPELLQTHLNGYVKGKVSEDLLPHDEVAQLSKKIKLGLML 928
L+++ ++ K + SII PELLQ L GYVKG VSE+LL H EV QLSKKI++GL L
Sbjct: 165 LDRHSSATPTSAAKPLRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYL 224
Query: 927 EKHKARLKKRLGFEPSDNELASSLRISPTKLRLMLLECSLARERLAMKNIRLVMSIAQKY 748
E+ K+RLK+RLG EPSD++LA SL++S T L+ L+ECSLARERLAM N+RLVMSIAQ+Y
Sbjct: 225 EEQKSRLKERLGCEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRY 284
Query: 747 NNVGPDMADLVQGGLIGLLRGIEKFDPSKGFKISTYVYWWIRQGVLKVLFLNSKTVRLPR 568
+NVG +MADLVQGGLIGLLRGIEKFDPSKG+KISTYVYWWIRQGV + L NS+T+RLP
Sbjct: 285 DNVGAEMADLVQGGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPT 344
Query: 567 YLCERLISIRNAKVKLKRQGITPSVDSLADYLNMSERKVENATQADRMMISFEKEAFPSL 388
YL ERL IRNAK +L+ +GITPSV+++A LNMS++KV NAT+A M S ++EAFPSL
Sbjct: 345 YLHERLSLIRNAKARLEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSL 404
Query: 387 NGRPGKTLHSYVADNNLENSPWQGFEDGYLKDEVNRLLLTTLSKREQDIVRLYHGV 220
NG PG+TLHSY+ADN+LEN+PW G + LKDEVN L+ +TL RE++I+RLY+G+
Sbjct: 405 NGLPGETLHSYIADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGL 460
Score = 94.0 bits (232), Expect(3) = e-132
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Frame = -2
Query: 1592 MMATAIVAGLSMGRKFSCTPSLSTDTIDKVLSIQGYGLPQLSGASSKNSTAAKMSSDLHS 1413
MM+TA V GLS G++ + +D +K+ + LP S KN AK SSD
Sbjct: 1 MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60
Query: 1412 GIPVNKRLPAPKALAQHEDTSLSLTTKANWFSNYDRVE-ESDPDLSSWHDLIVFQKSMLE 1236
+++ + K+L +H D + + +WF Y++++ ESD + S L++ QKSMLE
Sbjct: 61 SCVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLE 120
Query: 1235 KQWKLSFNQTATTAAP--EENNKKRVIMGSGVSARQRRRSTR 1116
KQW LS QT TA+P E+ +KK I SG SAR+RR +R
Sbjct: 121 KQWNLSLEQT-LTASPQHEKKSKKMHITCSGTSARRRRMDSR 161
Score = 46.2 bits (108), Expect(3) = e-132
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = -2
Query: 137 WEDIGKHYGLSRERVRQVGLVAFXXXXXXXXXQRMEALLVK 15
WEDI K GLSRERVRQVGLVA ++++A+L+K
Sbjct: 467 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRQLDAMLIK 507
>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
polymerase sigma factor sigA-like [Cucumis sativus]
Length = 508
Score = 367 bits (941), Expect(3) = e-126
Identities = 185/283 (65%), Positives = 231/283 (81%)
Frame = -1
Query: 1068 KQIHSIISPELLQTHLNGYVKGKVSEDLLPHDEVAQLSKKIKLGLMLEKHKARLKKRLGF 889
KQ+ ISPELLQ L GYVKG +SE+LL H EV +LSKKIK+GL LE+ K RLK+RLG
Sbjct: 178 KQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGC 237
Query: 888 EPSDNELASSLRISPTKLRLMLLECSLARERLAMKNIRLVMSIAQKYNNVGPDMADLVQG 709
EPS+++LA SL+IS +LR ++E SLARE+LAM N+RLVMSIAQ+Y+N+G +MADLVQG
Sbjct: 238 EPSEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQG 297
Query: 708 GLIGLLRGIEKFDPSKGFKISTYVYWWIRQGVLKVLFLNSKTVRLPRYLCERLISIRNAK 529
GLIGLLRGIEKFD SKGFKISTYVYWWIRQGV + L NS+T+RLP +L ERL IRNAK
Sbjct: 298 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAK 357
Query: 528 VKLKRQGITPSVDSLADYLNMSERKVENATQADRMMISFEKEAFPSLNGRPGKTLHSYVA 349
VKL+ +GITPS+D +A+ LNMS++KV+NAT+A + S ++EAFPSLNG PG+T HSY+A
Sbjct: 358 VKLQEKGITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIA 417
Query: 348 DNNLENSPWQGFEDGYLKDEVNRLLLTTLSKREQDIVRLYHGV 220
DN LEN+PW G + LK EVN+L+ TL RE++I+RLYHG+
Sbjct: 418 DNCLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGL 460
Score = 87.4 bits (215), Expect(3) = e-126
Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Frame = -2
Query: 1592 MMATAIVAGLSMGRKFSCTPSLSTDTIDKVLSIQGYGLPQLSGASSKNSTAAKMSSDLHS 1413
MMATA + GL ++ + S +D +K+L Y L Q +SSK+ AK S++
Sbjct: 1 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
Query: 1412 GIPVNKRLPAP--KALAQHEDTSLSLTTKANWFSNYDRVEESDPDLSSWHDLIVFQKSML 1239
P + R KA+ +H +T S + W + +E + L++ QKSML
Sbjct: 61 RYPSSNRHSQQCIKAVKEHVETPSSPIAEP-WHNTTSWEDEETELKYTVEALLLLQKSML 119
Query: 1238 EKQWKLSFNQTATTAAPEENNKKRV-IMGSGVSARQRRRSTR 1116
EKQW LSF QT +T P+E K+V + SGVSARQRR S++
Sbjct: 120 EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSK 161
Score = 49.7 bits (117), Expect(3) = e-126
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = -2
Query: 137 WEDIGKHYGLSRERVRQVGLVAFXXXXXXXXXQRMEALLVKH 12
WE+I K GLSRERVRQVGLVA ++MEA+L+KH
Sbjct: 467 WEEISKRIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLLKH 508
>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 375 bits (962), Expect(3) = e-126
Identities = 185/282 (65%), Positives = 234/282 (82%)
Frame = -1
Query: 1065 QIHSIISPELLQTHLNGYVKGKVSEDLLPHDEVAQLSKKIKLGLMLEKHKARLKKRLGFE 886
Q+ S ISPELLQ L GYVKG VSE+LL H EV LS+KIK+GL LE+HK+RLK++LG E
Sbjct: 174 QLKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCE 233
Query: 885 PSDNELASSLRISPTKLRLMLLECSLARERLAMKNIRLVMSIAQKYNNVGPDMADLVQGG 706
PSD+++A+SL+IS T+LR ++ECSLARE+LAM N+RLVMSIAQKY+N+G +M DLVQGG
Sbjct: 234 PSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGG 293
Query: 705 LIGLLRGIEKFDPSKGFKISTYVYWWIRQGVLKVLFLNSKTVRLPRYLCERLISIRNAKV 526
LIGLLRGIEKFD SKGFKISTYVYWWIRQGV + L NS+T+RLP +L ERL IRNAK
Sbjct: 294 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKF 353
Query: 525 KLKRQGITPSVDSLADYLNMSERKVENATQADRMMISFEKEAFPSLNGRPGKTLHSYVAD 346
+L+ +GITP++D +A YLNMS++KV NAT+A +IS ++EAFPSLNG G+T HSY+AD
Sbjct: 354 RLEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGETHHSYIAD 413
Query: 345 NNLENSPWQGFEDGYLKDEVNRLLLTTLSKREQDIVRLYHGV 220
N +EN PW G ++ LKDEVNRL+ TL +RE++I+RLY+G+
Sbjct: 414 NRVENIPWNGVDEWALKDEVNRLINVTLVEREREIIRLYYGL 455
Score = 76.3 bits (186), Expect(3) = e-126
Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 7/165 (4%)
Frame = -2
Query: 1589 MATAIVAGLSMGRKFSCTPSLSTDTIDKVLSIQGYGLPQLSGASSKNSTAAKMSSDLHSG 1410
MATA V GLS G++ + +D I+K+ +G +K+ AK SS+
Sbjct: 1 MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60
Query: 1409 IPV-NKRLPAPKALAQHEDTSLSLTTKANWFSNYD----RVEESDPDLSSWHDLIVFQKS 1245
P N++ + KAL +H D + ++ WF +Y+ VE S+ S L++ QKS
Sbjct: 61 FPASNQQNQSIKALKEHVDDAPTIADP--WFQSYNSNDLEVESSEMGYSV-EALLLLQKS 117
Query: 1244 MLEKQWKLSFNQTATTAAPEENNK--KRVIMGSGVSARQRRRSTR 1116
MLEKQW LSF + T + K K + SGVSARQRR +T+
Sbjct: 118 MLEKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTK 162
Score = 50.8 bits (120), Expect(3) = e-126
Identities = 25/42 (59%), Positives = 29/42 (69%)
Frame = -2
Query: 137 WEDIGKHYGLSRERVRQVGLVAFXXXXXXXXXQRMEALLVKH 12
WEDI K GLSRERVRQVGLVA ++MEA+L+KH
Sbjct: 462 WEDISKRIGLSRERVRQVGLVALEKLKHAARKRQMEAMLLKH 503