BLASTX nr result

ID: Dioscorea21_contig00004126 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00004126
         (705 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310719.1| predicted protein [Populus trichocarpa] gi|2...   313   2e-83
emb|CBH32591.1| unnamed protein product [Triticum aestivum]           312   5e-83
emb|CBH32589.1| DNA polymerase alpha catalytic subunit,putative,...   312   5e-83
ref|XP_003567311.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymera...   308   5e-82
ref|XP_002523609.1| DNA polymerase alpha catalytic subunit, puta...   304   1e-80

>ref|XP_002310719.1| predicted protein [Populus trichocarpa] gi|222853622|gb|EEE91169.1|
            predicted protein [Populus trichocarpa]
          Length = 1312

 Score =  313 bits (803), Expect = 2e-83
 Identities = 159/214 (74%), Positives = 181/214 (84%), Gaps = 2/214 (0%)
 Frame = +3

Query: 3    RDLLREVSYSLTQLAKTQLKKERKEIAPHDIPAMFQMSSTLLELVDYGVNDARLSLELMF 182
            RDLL+EVSYSLTQLAKT+L K+RKEIAPHDIP MFQ S +L+ELV+YG  DA LS+ELMF
Sbjct: 522  RDLLKEVSYSLTQLAKTRLNKDRKEIAPHDIPTMFQTSKSLIELVEYGETDAWLSMELMF 581

Query: 183  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKYMVPDKNSGRSKEMHTT 362
            HLS+LPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH+FHAKKY+VPDK S R KE   T
Sbjct: 582  HLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKMSSRVKEAKIT 641

Query: 363  KRRISAGTEGDDNNNLNVDSIPLEDGD--IEQGKGKKGPAYSGGLVLEPKKGLHDKYVLL 536
            KRRI+ G E  + + L+ D+   E+ +   + GK KKGPAY+GGLVLEPKKGL+DKYVLL
Sbjct: 642  KRRINNGIEDRNADELDTDAANFENDNQQSDHGKRKKGPAYAGGLVLEPKKGLYDKYVLL 701

Query: 537  LDFNSLYPSIIQEFNICFTTVERSPDGVATSLPS 638
            LDFNSLYPSIIQE+NICFTTVERS DG+   LPS
Sbjct: 702  LDFNSLYPSIIQEYNICFTTVERSMDGLVPRLPS 735


>emb|CBH32591.1| unnamed protein product [Triticum aestivum]
          Length = 1016

 Score =  312 bits (799), Expect = 5e-83
 Identities = 157/213 (73%), Positives = 186/213 (87%), Gaps = 1/213 (0%)
 Frame = +3

Query: 3    RDLLREVSYSLTQLAKTQLKKERKEIAPHDIPAMFQMSSTLLELVDYGVNDARLSLELMF 182
            RDLLREVSYSLTQLA+TQLKK+R+E++PHDIP MFQ S TLL+LV+YG  DA LSLELMF
Sbjct: 779  RDLLREVSYSLTQLAETQLKKDRREVSPHDIPPMFQSSGTLLKLVEYGETDAWLSLELMF 838

Query: 183  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKYMVPDKNSGRSKEMHTT 362
            HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKK+++PDK + R+KE+++ 
Sbjct: 839  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKFIIPDKFAARNKELNSA 898

Query: 363  KRRISAGTEGDDNNNLNVD-SIPLEDGDIEQGKGKKGPAYSGGLVLEPKKGLHDKYVLLL 539
            KR+++A TEG +  +   D SI  E  + +QGK +KGP+Y+GGLVLEPKKGL+DKY+LLL
Sbjct: 899  KRKLNADTEGGNAADGAADPSIDDEVHNGDQGKARKGPSYAGGLVLEPKKGLYDKYILLL 958

Query: 540  DFNSLYPSIIQEFNICFTTVERSPDGVATSLPS 638
            DFNSLYPSIIQEFNICFTTVERS DG   +LP+
Sbjct: 959  DFNSLYPSIIQEFNICFTTVERSSDGNLPNLPN 991


>emb|CBH32589.1| DNA polymerase alpha catalytic subunit,putative,expressed [Triticum
            aestivum]
          Length = 1516

 Score =  312 bits (799), Expect = 5e-83
 Identities = 157/213 (73%), Positives = 186/213 (87%), Gaps = 1/213 (0%)
 Frame = +3

Query: 3    RDLLREVSYSLTQLAKTQLKKERKEIAPHDIPAMFQMSSTLLELVDYGVNDARLSLELMF 182
            RDLLREVSYSLTQLA+TQLKK+R+E++PHDIP MFQ S TLL+LV+YG  DA LSLELMF
Sbjct: 733  RDLLREVSYSLTQLAETQLKKDRREVSPHDIPPMFQSSGTLLKLVEYGETDAWLSLELMF 792

Query: 183  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKYMVPDKNSGRSKEMHTT 362
            HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKK+++PDK + R+KE+++ 
Sbjct: 793  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKFIIPDKFAARNKELNSA 852

Query: 363  KRRISAGTEGDDNNNLNVD-SIPLEDGDIEQGKGKKGPAYSGGLVLEPKKGLHDKYVLLL 539
            KR+++A TEG +  +   D SI  E  + +QGK +KGP+Y+GGLVLEPKKGL+DKY+LLL
Sbjct: 853  KRKLNADTEGGNAADGAADPSIDDEVHNGDQGKARKGPSYAGGLVLEPKKGLYDKYILLL 912

Query: 540  DFNSLYPSIIQEFNICFTTVERSPDGVATSLPS 638
            DFNSLYPSIIQEFNICFTTVERS DG   +LP+
Sbjct: 913  DFNSLYPSIIQEFNICFTTVERSSDGNLPNLPN 945


>ref|XP_003567311.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase alpha catalytic
            subunit-like [Brachypodium distachyon]
          Length = 1538

 Score =  308 bits (790), Expect = 5e-82
 Identities = 160/213 (75%), Positives = 184/213 (86%), Gaps = 1/213 (0%)
 Frame = +3

Query: 3    RDLLREVSYSLTQLAKTQLKKERKEIAPHDIPAMFQMSSTLLELVDYGVNDARLSLELMF 182
            RDLLREVSYSLTQLA+TQLKK+R+E++PHDIP MFQ S TLL+LV+YG  DA LSLELMF
Sbjct: 756  RDLLREVSYSLTQLAETQLKKDRREVSPHDIPPMFQSSGTLLKLVEYGETDAWLSLELMF 815

Query: 183  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKYMVPDKNSGRSKEMHTT 362
            HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKK++VPDK   R+KE+++ 
Sbjct: 816  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKFIVPDK-FARNKELNSA 874

Query: 363  KRRISAGTEGDDNNNLNVD-SIPLEDGDIEQGKGKKGPAYSGGLVLEPKKGLHDKYVLLL 539
            KR+ISA TEG +  +   D SI  E    +QGK +KGP+Y+GGLVLEPKKGL+DKY+LLL
Sbjct: 875  KRKISADTEGANAADGAADPSIDDEVHHGDQGKARKGPSYAGGLVLEPKKGLYDKYILLL 934

Query: 540  DFNSLYPSIIQEFNICFTTVERSPDGVATSLPS 638
            DFNSLYPSIIQEFNICFTTVERS DG   +LP+
Sbjct: 935  DFNSLYPSIIQEFNICFTTVERSSDGNLPNLPT 967


>ref|XP_002523609.1| DNA polymerase alpha catalytic subunit, putative [Ricinus communis]
            gi|223537171|gb|EEF38804.1| DNA polymerase alpha
            catalytic subunit, putative [Ricinus communis]
          Length = 1526

 Score =  304 bits (779), Expect = 1e-80
 Identities = 155/220 (70%), Positives = 179/220 (81%), Gaps = 3/220 (1%)
 Frame = +3

Query: 3    RDLLREVSYSLTQLAKTQLKKERKEIAPHDIPAMFQMSSTLLELVDYGVNDARLSLELMF 182
            RDLL+EVSYSLT+LA+T+L K+RKE+ PHDIP MFQ S +L+EL+++G  DA LS+ELMF
Sbjct: 736  RDLLKEVSYSLTELARTRLNKDRKEVTPHDIPRMFQSSKSLIELIEFGETDAWLSMELMF 795

Query: 183  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKYMVPDKNSGR-SKEMHT 359
            HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH+FHAKKY+VPDKNS    KE   
Sbjct: 796  HLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKNSFHLKKETKM 855

Query: 360  TKRRISAGTEGDDNNNLNVDSIPLEDGDIE--QGKGKKGPAYSGGLVLEPKKGLHDKYVL 533
            TKRRI  G E  +   L+ D    ++   E  +GKGKKGPAY GGLVLEPKKGL+DKYVL
Sbjct: 856  TKRRIHNGVEEKNAEELDTDHANFDNDSPENDRGKGKKGPAYVGGLVLEPKKGLYDKYVL 915

Query: 534  LLDFNSLYPSIIQEFNICFTTVERSPDGVATSLPSLIPVG 653
            LLDFNSLYPSIIQE+NICFTTVE+S DG+   LPS+   G
Sbjct: 916  LLDFNSLYPSIIQEYNICFTTVEKSTDGLVPRLPSIKTTG 955


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