BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00004000
         (797 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95799.2| retrotransposon protein, putative, unclassified, ...   321   1e-85
gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]    320   2e-85
gb|AAO20078.1| putative polyprotein [Oryza sativa Japonica Group]     311   1e-82
emb|CAE03644.2| OSJNBa0060N03.9 [Oryza sativa Japonica Group]         311   1e-82
gb|ABA94321.1| retrotransposon protein, putative, unclassified [...   311   1e-82

>gb|ABA95799.2| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 2156

 Score =  321 bits (823), Expect = 1e-85
 Identities = 154/235 (65%), Positives = 176/235 (74%), Gaps = 14/235 (5%)
 Frame = +3

Query: 3    FQDFLAYVKTQFEVQVKILRTDNGTEYVNKEFAALLSNQGILHQTTCPDTPAQNGVAERK 182
            FQ+F AY+K  F  +V+ +RTDNG EY+N EF++ LS++GILHQT+CPDTP QNGVAERK
Sbjct: 956  FQNFYAYIKNHFNARVQFIRTDNGGEYINNEFSSFLSSEGILHQTSCPDTPPQNGVAERK 1015

Query: 183  NRHLLEVARSLMLTMNVPKFLWSEAVMTAAYLINRMPSRVLGMKTPCEMLLGSNVFVVPP 362
            NRHLLE ARSLM  MNVPKFLWSEAVMTA YLINR PSR+LGM+TPCEM+ G N FVVPP
Sbjct: 1016 NRHLLETARSLMYAMNVPKFLWSEAVMTATYLINRTPSRILGMQTPCEMIFGKNEFVVPP 1075

Query: 363  RVFGCTCYVRDHRLMVSKLDPQAVKCIFVGYSSSQKGYMCWCPTERRLFVSMDVTFREFE 542
            +VFGCTC+VRDHR  V KLDP+AVKCIF+GY S QKGY CW P+ERR FVSMDVTFRE  
Sbjct: 1076 KVFGCTCFVRDHRPSVGKLDPRAVKCIFIGYPSGQKGYKCWSPSERRTFVSMDVTFRESV 1135

Query: 543  PFYGEKTELSSLFGD--------------GSTDASRXXXXXXXXXIVVGMIPCPL 665
            PFYGEKT+LSSLF D              G     +          VVG IPCP+
Sbjct: 1136 PFYGEKTDLSSLFVDLDNSTSGHDGQQMEGEILGPKGDEQSKKEKFVVGSIPCPM 1190


>gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]
          Length = 1472

 Score =  320 bits (821), Expect = 2e-85
 Identities = 158/234 (67%), Positives = 178/234 (76%), Gaps = 13/234 (5%)
 Frame = +3

Query: 3    FQDFLAYVKTQFEVQVKILRTDNGTEYVNKEFAALLSNQGILHQTTCPDTPAQNGVAERK 182
            FQ+F AY+K  F  +V+ +RTDNG EY+N EF   LS +GILHQT+CPDTP QNGVAERK
Sbjct: 605  FQNFYAYIKNHFNARVQFIRTDNGGEYMNSEFGHFLSLEGILHQTSCPDTPPQNGVAERK 664

Query: 183  NRHLLEVARSLMLTMNVPKFLWSEAVMTAAYLINRMPSRVLGMKTPCEMLLGSNVFVVPP 362
            NRHLLE+ARSLM TMNVPKFLWSEAVMTAAYLINR PSR+LGMKTP EM+ G N FVVPP
Sbjct: 665  NRHLLEIARSLMYTMNVPKFLWSEAVMTAAYLINRTPSRILGMKTPYEMIFGKNEFVVPP 724

Query: 363  RVFGCTCYVRDHRLMVSKLDPQAVKCIFVGYSSSQKGYMCWCPTERRLFVSMDVTFREFE 542
            RVFGCTC+VRDHR  + KLDP+AVKCIF+GYSSSQKGY CW P+ERR FVSMDVTFRE  
Sbjct: 725  RVFGCTCFVRDHRPSIGKLDPRAVKCIFIGYSSSQKGYKCWSPSERRTFVSMDVTFRESV 784

Query: 543  PFYGEKTELSSLFGD------GSTDASR-------XXXXXXXXXIVVGMIPCPL 665
            PFYGEKT++SSLF D      G  D  +                IVVG IPC +
Sbjct: 785  PFYGEKTDISSLFVDLDDLTRGDHDQQKEGEILGLKENEQSKGKIVVGEIPCAI 838


>gb|AAO20078.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1299

 Score =  311 bits (797), Expect = 1e-82
 Identities = 152/231 (65%), Positives = 172/231 (74%), Gaps = 14/231 (6%)
 Frame = +3

Query: 15   LAYVKTQFEVQVKILRTDNGTEYVNKEFAALLSNQGILHQTTCPDTPAQNGVAERKNRHL 194
            LA +    E + K +RTDNG EY+N EF++ LS++GILHQT+CPDTP QNGVAERKNRHL
Sbjct: 435  LALMAPTSEEEAKFIRTDNGGEYINNEFSSFLSSEGILHQTSCPDTPPQNGVAERKNRHL 494

Query: 195  LEVARSLMLTMNVPKFLWSEAVMTAAYLINRMPSRVLGMKTPCEMLLGSNVFVVPPRVFG 374
            LE ARSLM  MNVPKFLWSEAVMTA YLINR PSR+LGMKTPCEM+ G N FVVPP+VFG
Sbjct: 495  LETARSLMYAMNVPKFLWSEAVMTATYLINRTPSRILGMKTPCEMIFGKNEFVVPPKVFG 554

Query: 375  CTCYVRDHRLMVSKLDPQAVKCIFVGYSSSQKGYMCWCPTERRLFVSMDVTFREFEPFYG 554
            CTC+VRDHR  + KLDP+AVKCIFVGYSS QKGY CW P+ERR FVSMDVTFRE  PFYG
Sbjct: 555  CTCFVRDHRPSIGKLDPRAVKCIFVGYSSGQKGYKCWSPSERRTFVSMDVTFRESVPFYG 614

Query: 555  EKTELSSLFGDGSTDAS--------------RXXXXXXXXXIVVGMIPCPL 665
            EKT+LSSLF D     S              +         +VVG IPCP+
Sbjct: 615  EKTDLSSLFIDLDDSTSGHDGHQMKDEILGPKGDEQPKKEKLVVGSIPCPM 665


>emb|CAE03644.2| OSJNBa0060N03.9 [Oryza sativa Japonica Group]
          Length = 1045

 Score =  311 bits (797), Expect = 1e-82
 Identities = 150/227 (66%), Positives = 173/227 (76%), Gaps = 5/227 (2%)
 Frame = +3

Query: 3    FQDFLAYVKTQFEVQVKILRTDNGTEYVNKEFAALLSNQGILHQTTCPDTPAQNGVAERK 182
            FQDF   V TQF+ +VKI+RTDNGTEY+N EF + +S++GI+HQTTCP TP QNGVAERK
Sbjct: 514  FQDFHKLVTTQFDAKVKIIRTDNGTEYINNEFVSYVSDEGIIHQTTCPGTPPQNGVAERK 573

Query: 183  NRHLLEVARSLMLTMNVPKFLWSEAVMTAAYLINRMPSRVLGMKTPCEMLLGSNVFVVPP 362
            NRHLLEVARSLM  MNVPK+LWSEAVMTAAYLINRMPSR+LGMK+P E+LLG   F VPP
Sbjct: 574  NRHLLEVARSLMFQMNVPKYLWSEAVMTAAYLINRMPSRILGMKSPAELLLGKREFKVPP 633

Query: 363  RVFGCTCYVRDHRLMVSKLDPQAVKCIFVGYSSSQKGYMCWCPTERRLFVSMDVTFREFE 542
            +VFGC C+VRDHR  V KLDP AVKC+FVGY+SSQKGY CW P ERRLFVSMDVTFREFE
Sbjct: 634  KVFGCVCFVRDHRPSVGKLDPHAVKCVFVGYASSQKGYKCWDPIERRLFVSMDVTFREFE 693

Query: 543  PFYGEKTELSSLFGDGST-----DASRXXXXXXXXXIVVGMIPCPLE 668
            P+Y  K +L     + ST                  IV+G IPC ++
Sbjct: 694  PYYKSKGDLDQFLEEFSTVMEVDSREGERERENGEAIVIGSIPCSID 740


>gb|ABA94321.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1133

 Score =  311 bits (796), Expect = 1e-82
 Identities = 149/227 (65%), Positives = 173/227 (76%), Gaps = 5/227 (2%)
 Frame = +3

Query: 3    FQDFLAYVKTQFEVQVKILRTDNGTEYVNKEFAALLSNQGILHQTTCPDTPAQNGVAERK 182
            FQDF   V TQF+ +VKI+RTDNGTEY+N EF + +S++GI+HQTTCP TP QNGVAERK
Sbjct: 345  FQDFHKLVTTQFDAKVKIIRTDNGTEYINNEFVSYVSDEGIIHQTTCPGTPPQNGVAERK 404

Query: 183  NRHLLEVARSLMLTMNVPKFLWSEAVMTAAYLINRMPSRVLGMKTPCEMLLGSNVFVVPP 362
            NRHLLEVARSLM  MNVPK+LWSEAVMTAAYLINRMPSR+LGMK+P E+LLG   F VPP
Sbjct: 405  NRHLLEVARSLMFQMNVPKYLWSEAVMTAAYLINRMPSRILGMKSPAELLLGKREFKVPP 464

Query: 363  RVFGCTCYVRDHRLMVSKLDPQAVKCIFVGYSSSQKGYMCWCPTERRLFVSMDVTFREFE 542
            +VFGC C+VRDHR  V KLDP AVKC+FVGY+SSQKGY CW P ERRLFVSMDVTFREFE
Sbjct: 465  KVFGCVCFVRDHRPSVGKLDPHAVKCVFVGYASSQKGYKCWDPIERRLFVSMDVTFREFE 524

Query: 543  PFYGEKTELSSLFGDGST-----DASRXXXXXXXXXIVVGMIPCPLE 668
            P+Y  K +L     + ST                  +V+G IPC ++
Sbjct: 525  PYYKSKGDLDQFLEEFSTVMEVDSREGERERENGEAVVIGSIPCSID 571