BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00003085
         (432 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I...   109   2e-22
ref|XP_002317630.1| predicted protein [Populus trichocarpa] gi|3...   109   2e-22
ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III ...   107   1e-21
ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, I...   106   2e-21
tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ...   106   2e-21

>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Vitis vinifera]
           gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4 [Vitis
           vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
           product [Vitis vinifera]
          Length = 51

 Score =  109 bits (273), Expect = 2e-22
 Identities = 48/51 (94%), Positives = 49/51 (96%)
 Frame = -3

Query: 376 MDPQPEPTSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 224
           MDPQPEP SYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_002317630.1| predicted protein [Populus trichocarpa]
           gi|356531072|ref|XP_003534102.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Glycine max] gi|356560019|ref|XP_003548293.1|
           PREDICTED: DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 [Glycine max] gi|222860695|gb|EEE98242.1|
           predicted protein [Populus trichocarpa]
           gi|255630274|gb|ACU15492.1| unknown [Glycine max]
          Length = 51

 Score =  109 bits (273), Expect = 2e-22
 Identities = 48/51 (94%), Positives = 49/51 (96%)
 Frame = -3

Query: 376 MDPQPEPTSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 224
           MDPQPEP SYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
           [Medicago truncatula] gi|355484947|gb|AES66150.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC4 [Medicago truncatula]
          Length = 121

 Score =  107 bits (266), Expect = 1e-21
 Identities = 48/63 (76%), Positives = 53/63 (84%)
 Frame = -3

Query: 412 SSFSSEILVF*VMDPQPEPTSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRVVQY 233
           +S S E  +  VMDP PEP SY+CGDCG ENTLK GDVIQCR+CGYRILYKKRTRR+VQY
Sbjct: 2   TSKSKECFIVGVMDPLPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQY 61

Query: 232 EAR 224
           EAR
Sbjct: 62  EAR 64



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 36/69 (52%), Positives = 45/69 (65%)
 Frame = -3

Query: 430 KETLARSSFSSEILVF*VMDPQPEPTSYICGDCGAENTLKPGDVIQCRECGYRILYKKRT 251
           K T     + + +L+   MDP P+P  Y+CGDCGAE  L    V+QC  C Y+ILYKKRT
Sbjct: 53  KRTRRIVQYEARLLLKPDMDPPPQPIRYLCGDCGAETPLYTDGVLQCCVCFYKILYKKRT 112

Query: 250 RRVVQYEAR 224
            RV+QYEAR
Sbjct: 113 HRVLQYEAR 121


>ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Cucumis sativus]
           gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Cucumis sativus]
          Length = 51

 Score =  106 bits (265), Expect = 2e-21
 Identities = 47/51 (92%), Positives = 48/51 (94%)
 Frame = -3

Query: 376 MDPQPEPTSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 224
           MDPQPEP SYICGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
           1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
           DNA-directed RNA polymerase I, II, and III polypeptide
           isoform 2, partial [Zea mays]
          Length = 100

 Score =  106 bits (264), Expect = 2e-21
 Identities = 48/52 (92%), Positives = 50/52 (96%), Gaps = 1/52 (1%)
 Frame = -3

Query: 376 MDPQ-PEPTSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 224
           MDPQ PEP SY+CGDCGAENTLKPGDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 49  MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 100