BLASTX nr result

ID: Dioscorea21_contig00002607 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00002607
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527215.1| DNA binding protein, putative [Ricinus commu...   129   2e-28
ref|XP_002265108.2| PREDICTED: uncharacterized protein LOC100252...   127   1e-27
emb|CBI25715.3| unnamed protein product [Vitis vinifera]              127   1e-27
ref|XP_002321500.1| predicted protein [Populus trichocarpa] gi|2...   119   3e-25
ref|XP_002878627.1| hypothetical protein ARALYDRAFT_343817 [Arab...   114   8e-24

>ref|XP_002527215.1| DNA binding protein, putative [Ricinus communis]
           gi|223533391|gb|EEF35141.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 871

 Score =  129 bits (325), Expect = 2e-28
 Identities = 66/122 (54%), Positives = 85/122 (69%), Gaps = 3/122 (2%)
 Frame = -3

Query: 359 GFTETTKQWEDSYGLRYWRAGAMYKGSLPSALP---LFPDLSKHDXXXXXXXXXXXKCVN 189
           GF+ TTKQWE+++G RYW+AGAMY+GS PS L    L P++ + D             + 
Sbjct: 264 GFSGTTKQWEETFGTRYWKAGAMYRGSGPSPLTITSLLPNILRKDVLAPNEIQKI---IQ 320

Query: 188 LPNVMVVEVLMEIVGIRNLPSTKKGNLFVTFSKKQPDMFLDGVSNLTIFSETGQKEVAGF 9
           LP V +VEVL+EIVGI+NLP   KG+LFVTFSKKQPD+F +    LTI SE+G+K+VA F
Sbjct: 321 LPEVKIVEVLLEIVGIKNLPEGLKGSLFVTFSKKQPDVFFNVKRKLTILSESGEKQVASF 380

Query: 8   QC 3
           QC
Sbjct: 381 QC 382


>ref|XP_002265108.2| PREDICTED: uncharacterized protein LOC100252003 [Vitis vinifera]
          Length = 825

 Score =  127 bits (318), Expect = 1e-27
 Identities = 63/119 (52%), Positives = 80/119 (67%)
 Frame = -3

Query: 359 GFTETTKQWEDSYGLRYWRAGAMYKGSLPSALPLFPDLSKHDXXXXXXXXXXXKCVNLPN 180
           GF+ETTKQWE+++G RYWRAGAM++GS PS L   P                 K + LP 
Sbjct: 265 GFSETTKQWEETFGSRYWRAGAMHRGSAPSPLTTTPYSPNMMTKKVVAPYDCQKIIQLPE 324

Query: 179 VMVVEVLMEIVGIRNLPSTKKGNLFVTFSKKQPDMFLDGVSNLTIFSETGQKEVAGFQC 3
           V VVEVL+EIVG++NLP   KG+L+V+FSK QPD   +    LTIFSE+G+K+VA FQC
Sbjct: 325 VKVVEVLLEIVGVKNLPVGHKGSLYVSFSKTQPDTIFNAKRRLTIFSESGEKQVASFQC 383


>emb|CBI25715.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  127 bits (318), Expect = 1e-27
 Identities = 63/119 (52%), Positives = 80/119 (67%)
 Frame = -3

Query: 359 GFTETTKQWEDSYGLRYWRAGAMYKGSLPSALPLFPDLSKHDXXXXXXXXXXXKCVNLPN 180
           GF+ETTKQWE+++G RYWRAGAM++GS PS L   P                 K + LP 
Sbjct: 239 GFSETTKQWEETFGSRYWRAGAMHRGSAPSPLTTTPYSPNMMTKKVVAPYDCQKIIQLPE 298

Query: 179 VMVVEVLMEIVGIRNLPSTKKGNLFVTFSKKQPDMFLDGVSNLTIFSETGQKEVAGFQC 3
           V VVEVL+EIVG++NLP   KG+L+V+FSK QPD   +    LTIFSE+G+K+VA FQC
Sbjct: 299 VKVVEVLLEIVGVKNLPVGHKGSLYVSFSKTQPDTIFNAKRRLTIFSESGEKQVASFQC 357


>ref|XP_002321500.1| predicted protein [Populus trichocarpa] gi|222868496|gb|EEF05627.1|
           predicted protein [Populus trichocarpa]
          Length = 789

 Score =  119 bits (298), Expect = 3e-25
 Identities = 60/119 (50%), Positives = 76/119 (63%)
 Frame = -3

Query: 359 GFTETTKQWEDSYGLRYWRAGAMYKGSLPSALPLFPDLSKHDXXXXXXXXXXXKCVNLPN 180
           GF+ TT+ WE+++G RYW+AGAMY+GS PS L   P  S              K + L  
Sbjct: 265 GFSGTTRHWEETFGRRYWKAGAMYRGSDPSPLTTIPFQSNILSKELEKSNQNKKMIELSE 324

Query: 179 VMVVEVLMEIVGIRNLPSTKKGNLFVTFSKKQPDMFLDGVSNLTIFSETGQKEVAGFQC 3
             +VEVL+EIVG++NLP   KGNLFV F+KKQPD+F +    LTI SE+G K VA FQC
Sbjct: 325 QKIVEVLLEIVGVKNLPERHKGNLFVMFNKKQPDVFYNVKRKLTILSESGDKHVASFQC 383


>ref|XP_002878627.1| hypothetical protein ARALYDRAFT_343817 [Arabidopsis lyrata subsp.
           lyrata] gi|297324466|gb|EFH54886.1| hypothetical protein
           ARALYDRAFT_343817 [Arabidopsis lyrata subsp. lyrata]
          Length = 920

 Score =  114 bits (285), Expect = 8e-24
 Identities = 56/120 (46%), Positives = 72/120 (60%)
 Frame = -3

Query: 362 TGFTETTKQWEDSYGLRYWRAGAMYKGSLPSALPLFPDLSKHDXXXXXXXXXXXKCVNLP 183
           TGF++TT QWE  +G RYW+AGAM++G  P+ +   PD S                +  P
Sbjct: 340 TGFSKTTAQWEGMFGTRYWKAGAMHRGKTPAPVTTSPDASDVLVKVPTAKEDIQNLIQFP 399

Query: 182 NVMVVEVLMEIVGIRNLPSTKKGNLFVTFSKKQPDMFLDGVSNLTIFSETGQKEVAGFQC 3
            V VVEVL+EI+GIRNLP   KG + V FSK +PD   +    LTI SE G+K+VA FQC
Sbjct: 400 EVEVVEVLLEIIGIRNLPDGHKGKISVMFSKTRPDSLFNAERRLTILSEVGEKQVATFQC 459


Top