BLASTX nr result

ID: Dioscorea21_contig00002506 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00002506
         (817 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI31404.3| unnamed protein product [Vitis vinifera]               87   4e-15
ref|XP_002267178.1| PREDICTED: heterogeneous nuclear ribonucleop...    87   4e-15
emb|CAN66927.1| hypothetical protein VITISV_011831 [Vitis vinifera]    87   4e-15
ref|XP_002315330.1| predicted protein [Populus trichocarpa] gi|2...    77   5e-12
ref|XP_002533374.1| glycine-rich RNA-binding protein, putative [...    73   7e-11

>emb|CBI31404.3| unnamed protein product [Vitis vinifera]
          Length = 294

 Score = 87.0 bits (214), Expect = 4e-15
 Identities = 43/73 (58%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = -2

Query: 816 YSGDRYGGPDRYPSNGYGKERGYXXXXXXXXXXXXXXXXXXGPVRYEG-SYRDRPGPYDR 640
           +SGDRYGG DRYP NGYGK+RGY                     R EG SYR+RPGPYDR
Sbjct: 224 FSGDRYGGSDRYPQNGYGKDRGYDRDAAPRGGGDRYAGGGS--ARNEGRSYRNRPGPYDR 281

Query: 639 PSRGGRPSSYDRY 601
           P+RGGRPSS+DRY
Sbjct: 282 PNRGGRPSSFDRY 294


>ref|XP_002267178.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G [Vitis
           vinifera]
          Length = 278

 Score = 87.0 bits (214), Expect = 4e-15
 Identities = 43/73 (58%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = -2

Query: 816 YSGDRYGGPDRYPSNGYGKERGYXXXXXXXXXXXXXXXXXXGPVRYEG-SYRDRPGPYDR 640
           +SGDRYGG DRYP NGYGK+RGY                     R EG SYR+RPGPYDR
Sbjct: 208 FSGDRYGGSDRYPQNGYGKDRGYDRDAAPRGGGDRYAGGGS--ARNEGRSYRNRPGPYDR 265

Query: 639 PSRGGRPSSYDRY 601
           P+RGGRPSS+DRY
Sbjct: 266 PNRGGRPSSFDRY 278


>emb|CAN66927.1| hypothetical protein VITISV_011831 [Vitis vinifera]
          Length = 240

 Score = 87.0 bits (214), Expect = 4e-15
 Identities = 43/73 (58%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = -2

Query: 816 YSGDRYGGPDRYPSNGYGKERGYXXXXXXXXXXXXXXXXXXGPVRYEG-SYRDRPGPYDR 640
           +SGDRYGG DRYP NGYGK+RGY                     R EG SYR+RPGPYDR
Sbjct: 170 FSGDRYGGSDRYPQNGYGKDRGYDRDAAPRGGGDRYAGGGS--ARNEGRSYRNRPGPYDR 227

Query: 639 PSRGGRPSSYDRY 601
           P+RGGRPSS+DRY
Sbjct: 228 PNRGGRPSSFDRY 240


>ref|XP_002315330.1| predicted protein [Populus trichocarpa] gi|222864370|gb|EEF01501.1|
           predicted protein [Populus trichocarpa]
          Length = 280

 Score = 77.0 bits (188), Expect = 5e-12
 Identities = 38/73 (52%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = -2

Query: 816 YSGDRYGGPDRYPSNGYGKERGYXXXXXXXXXXXXXXXXXXGPVRYE-GSYRDRPGPYDR 640
           +SGDRYGG DRY  NGYGK++GY                   P R +  SYR+RP PYDR
Sbjct: 210 FSGDRYGGSDRYAQNGYGKDKGYDRDVGPRGGNDRYGSGG--PQRNDRSSYRNRPAPYDR 267

Query: 639 PSRGGRPSSYDRY 601
           PSRGG PSS++RY
Sbjct: 268 PSRGGHPSSFERY 280


>ref|XP_002533374.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
           gi|223526781|gb|EEF29005.1| glycine-rich RNA-binding
           protein, putative [Ricinus communis]
          Length = 276

 Score = 73.2 bits (178), Expect = 7e-11
 Identities = 35/72 (48%), Positives = 42/72 (58%)
 Frame = -2

Query: 816 YSGDRYGGPDRYPSNGYGKERGYXXXXXXXXXXXXXXXXXXGPVRYEGSYRDRPGPYDRP 637
           ++ DRYGG DRY  N YGK+RGY                     R + SYR RPGPY+RP
Sbjct: 208 FASDRYGGSDRYAHNSYGKDRGYERDAVTRGGSDRYGNGGP---RGDRSYRSRPGPYERP 264

Query: 636 SRGGRPSSYDRY 601
           SRGG PSS++RY
Sbjct: 265 SRGGHPSSFERY 276


Top