BLASTX nr result
ID: Dioscorea21_contig00002100
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00002100
(1531 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tpg|DAA45165.1| TPA: putative RNA-binding zinc finger family pro... 317 7e-84
ref|XP_002467925.1| hypothetical protein SORBIDRAFT_01g036490 [S... 315 2e-83
ref|NP_001060660.1| Os07g0682400 [Oryza sativa Japonica Group] g... 313 8e-83
ref|NP_001152488.1| nucleic acid binding protein [Zea mays] gi|1... 299 1e-78
ref|XP_002463401.1| hypothetical protein SORBIDRAFT_02g043180 [S... 296 7e-78
>tpg|DAA45165.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 675
Score = 317 bits (811), Expect = 7e-84
Identities = 211/483 (43%), Positives = 254/483 (52%), Gaps = 125/483 (25%)
Frame = -3
Query: 1115 LGWNH----HRRSFSVTDLAVDAGGG----FGWRPCLYFARGYCKNGTSCRFLHG-IPDD 963
LGW++ HRRS SV +L + GGG FGW+PCLY+ARG+CKNG SCRF+HG + DD
Sbjct: 200 LGWHNGGPAHRRSSSVNELCLGGGGGGGDGFGWKPCLYYARGFCKNGGSCRFVHGGLSDD 259
Query: 962 AGAMT--KLESPVKNQRASQ----------LMASAFPYSPTSS--------PKSMSFLFH 843
A A+ K+E+ Q+ Q L +AFPYSPT S K +SFL
Sbjct: 260 AAALAGAKMEAAADQQQQCQDFLIRSKGQRLGPAAFPYSPTGSLPGSPSAASKCLSFLLQ 319
Query: 842 PQSES------------------------PRVSAMRIESLVNPGSRQIYLTFPADSTFRE 735
Q + PR+ S++NPGSRQIYLTFPADSTFRE
Sbjct: 320 QQQQQHDRAAAAASLMLGGGDEAHKFMARPRLDRADFASMMNPGSRQIYLTFPADSTFRE 379
Query: 734 EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYK 555
EDVSNYFSIYGPV DVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHF+CDARVLVKPYK
Sbjct: 380 EDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYK 439
Query: 554 EKGKVPDKFRK----------------DSREPYDLQHLVSPGSARILYSSGSSNNTQEAL 423
EKGKVPDK+RK D+R+P+DL L AR+L S S+N E L
Sbjct: 440 EKGKVPDKYRKQQQGDFSGCTTPTGGLDARDPFDLHQL----GARMLQHSNSAN---ELL 492
Query: 422 MXXXXXXXXXXXXXXXXXXXQGRRFMGLQLLDLKSRS---------------FSSH---- 300
+ Q RR MGLQLLDLK+R+ SSH
Sbjct: 493 LRRKLEEQQQAAELQHAIELQSRRLMGLQLLDLKARAAATASALPTPIANAFASSHPLST 552
Query: 299 ---SNPTNXXXXXXXXXXXESSGEVG----------INEDCVFQERSDEHNLPDNPFASP 159
+P G++ + D ++S EHNLPD+PFASP
Sbjct: 553 MAVESPLESGEQLKLSSGFALDGKLNGGDKEESACEASPDAADSDQSGEHNLPDSPFASP 612
Query: 158 TKDTHLLN------------------ID-TSNHLLTSSF-----NSCFFPVPRVSSGHGA 51
TK L++ ID SNHL + +S FFP+ R+SS HGA
Sbjct: 613 TKSAALVHDSFAATEPENTASCVGSKIDGGSNHLRPPALEIPSPSSYFFPMRRLSSDHGA 672
Query: 50 VGM 42
+GM
Sbjct: 673 MGM 675
Score = 99.8 bits (247), Expect = 2e-18
Identities = 48/64 (75%), Positives = 58/64 (90%)
Frame = -3
Query: 1520 MDAYEATRVVLSRIQALDPENAAKIMGFILIQDYGEKEMIRLAFGPESLLQSIVLKARIQ 1341
MDAYEAT+VV SRIQALDP++AAKIMG +LIQD+GEKEMIRLAFGPESLL +++ KAR
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGEKEMIRLAFGPESLLHAVMAKARKD 60
Query: 1340 LGII 1329
LG++
Sbjct: 61 LGLL 64
>ref|XP_002467925.1| hypothetical protein SORBIDRAFT_01g036490 [Sorghum bicolor]
gi|241921779|gb|EER94923.1| hypothetical protein
SORBIDRAFT_01g036490 [Sorghum bicolor]
Length = 680
Score = 315 bits (808), Expect = 2e-83
Identities = 208/488 (42%), Positives = 255/488 (52%), Gaps = 130/488 (26%)
Frame = -3
Query: 1115 LGWNH----HRRSFSVTDLAVDAGGG---FGWRPCLYFARGYCKNGTSCRFLHG-IPDDA 960
LGW + HRRS SV +L + +GGG FGW+PCLY+ARG+CKNG SCRF+HG +PDDA
Sbjct: 200 LGWPNGGPAHRRSASVNELCLGSGGGGDGFGWKPCLYYARGFCKNGGSCRFVHGGLPDDA 259
Query: 959 GAMT--KLESPVKNQ-----------RASQLMASAFPYSPTSS--------PKSMSFLFH 843
A+ K+++ Q ++ +L +AFPYSPT S K +SFL
Sbjct: 260 AALAGAKMDAAADQQQQQCQDFLIRSKSQRLGPAAFPYSPTGSLPGSPSAASKCLSFLLQ 319
Query: 842 PQSES------------------------PRVSAMRIESLVNPGSRQIYLTFPADSTFRE 735
Q + PR+ +++NPGSRQIYLTFPADSTFRE
Sbjct: 320 QQQQQHDRAAAAASLMLGGGDEAHKFMGRPRLDRADFANMMNPGSRQIYLTFPADSTFRE 379
Query: 734 EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYK 555
EDVSNYFSIYGPV DVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHF+CDARVLVKPYK
Sbjct: 380 EDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYK 439
Query: 554 EKGKVPDKFRK----------------DSREPYDLQHLVSPGSARILYSSGSSNNTQEAL 423
EKGKVPDK+RK D+R+P+DL L AR+L S S+N E L
Sbjct: 440 EKGKVPDKYRKQQQGDFSGCTTPPGGLDARDPFDLHQL----GARMLQHSNSAN---ELL 492
Query: 422 MXXXXXXXXXXXXXXXXXXXQGRRFMGLQLLDLKSR-----------------SFSSH-- 300
+ Q RR MGLQLLDLK+R +F+S
Sbjct: 493 LRRKLEEQQQVAELQQAIELQSRRLMGLQLLDLKARAAATAAAASPLPTPIANAFASSQL 552
Query: 299 ------SNPTNXXXXXXXXXXXESSGEVGINE------DCVFQERSDEHNLPDNPFASPT 156
+P G+V + D ++S EHNLPD+PFASPT
Sbjct: 553 VSTIVVESPPESGEQLKLSSGFALEGKVNAGDKEESACDAADSDQSGEHNLPDSPFASPT 612
Query: 155 KDTHL----------------LNIDT---------SNHLLTSSF-----NSCFFPVPRVS 66
K L + +D SNHL + +S FFP+ R+S
Sbjct: 613 KSAALVHDSFSATETENTSSHIGVDAGVGNKIDGGSNHLRPPALEIPSPSSYFFPMHRLS 672
Query: 65 SGHGAVGM 42
S HGA+GM
Sbjct: 673 SDHGAMGM 680
Score = 99.8 bits (247), Expect = 2e-18
Identities = 48/64 (75%), Positives = 58/64 (90%)
Frame = -3
Query: 1520 MDAYEATRVVLSRIQALDPENAAKIMGFILIQDYGEKEMIRLAFGPESLLQSIVLKARIQ 1341
MDAYEAT+VV SRIQALDP++AAKIMG +LIQD+GEKEMIRLAFGPESLL +++ KAR
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGEKEMIRLAFGPESLLHAVMAKARKD 60
Query: 1340 LGII 1329
LG++
Sbjct: 61 LGLL 64
>ref|NP_001060660.1| Os07g0682400 [Oryza sativa Japonica Group]
gi|122166929|sp|Q0D3J9.1|C3H53_ORYSJ RecName: Full=Zinc
finger CCCH domain-containing protein 53; Short=OsC3H53
gi|113612196|dbj|BAF22574.1| Os07g0682400 [Oryza sativa
Japonica Group] gi|215767061|dbj|BAG99289.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|215767076|dbj|BAG99304.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 682
Score = 313 bits (802), Expect = 8e-83
Identities = 209/506 (41%), Positives = 257/506 (50%), Gaps = 125/506 (24%)
Frame = -3
Query: 1184 ELQSPDGCAGGDLIDEVSFLNGELGWNHHRRSFSVTDLAVDAGGGFGWRPCLYFARGYCK 1005
E +SP G GG + + NG G HRRS SV++L + G GW+PCLY+ARGYCK
Sbjct: 188 ECRSPGGGDGGLFSYNLGWANGGPG---HRRSASVSELCLGGADGLGWKPCLYYARGYCK 244
Query: 1004 NGTSCRFLHG-IPDDAGAMTKLESPVKNQ--------RASQLMASAFPYSPTSS------ 870
NG++CRF+HG +PDDA S V+ Q ++ +L A+AFPYSPT S
Sbjct: 245 NGSACRFVHGGLPDDAAGKMD-PSAVEQQCQDFLIRSKSQRLAAAAFPYSPTGSLPGSPS 303
Query: 869 --PKSMSFLFHPQSES-------------------------PRVSAMRIESLVNPGSRQI 771
K +S L Q + PR+ S++NPGSRQI
Sbjct: 304 AATKCLSLLLQQQQQQNESQRAAAAAALMLGGDEAHKFMGRPRLERADFASMMNPGSRQI 363
Query: 770 YLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHF 591
YLTFPADSTFREEDVSNYFSIYGPV DVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHF
Sbjct: 364 YLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHF 423
Query: 590 VCDARVLVKPYKEKGKVPDKFRK-------------------DSREPYDLQHLVSPGSAR 468
+CDARVLVKPYKEKGKVPDK+RK D+R+P+D+ L AR
Sbjct: 424 ICDARVLVKPYKEKGKVPDKYRKQHQPGERVDFSSCTTPTGLDARDPFDMHQL----GAR 479
Query: 467 ILYSSGSSNNTQEALMXXXXXXXXXXXXXXXXXXXQGRRFMGLQLLDLKSRSFSSHS--- 297
+L S S+N E L+ RR MGLQLLD KSR+ ++ +
Sbjct: 480 MLQHSNSAN---EMLLRRKLEEQQQAAELQQAIELHSRRLMGLQLLDFKSRAAAAPTPIG 536
Query: 296 NP--TNXXXXXXXXXXXESSGEVGINEDCVF------------------------QERSD 195
NP + SGE+G + ++S
Sbjct: 537 NPFSASQTAANATGESPPDSGELGKGSGFLLAHKKAVNGADKEESTGESSSPNTDSDQSV 596
Query: 194 EHNLPDNPFASPTKDTHL--------------------------LNIDTS----NHLLTS 105
EHNLPD+PFASPTK +N S NHLL S
Sbjct: 597 EHNLPDSPFASPTKSAGFARDPFAPTEAEISATASTGCSATYVGINNGASNGGTNHLLPS 656
Query: 104 SFN-----SCFFPVPRVSSGHGAVGM 42
+ + FFP+ R++S HGA+GM
Sbjct: 657 ALDMPSPKPYFFPMSRLASDHGAIGM 682
Score = 104 bits (259), Expect = 7e-20
Identities = 49/65 (75%), Positives = 61/65 (93%)
Frame = -3
Query: 1520 MDAYEATRVVLSRIQALDPENAAKIMGFILIQDYGEKEMIRLAFGPESLLQSIVLKARIQ 1341
MDAYEAT+VV SRIQALDP++AAKIMGF+LIQD+GEKEMIRLAFGPE+LL +++ KAR +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 1340 LGIIP 1326
LG++P
Sbjct: 61 LGLLP 65
>ref|NP_001152488.1| nucleic acid binding protein [Zea mays] gi|195656755|gb|ACG47845.1|
nucleic acid binding protein [Zea mays]
Length = 653
Score = 299 bits (766), Expect = 1e-78
Identities = 192/402 (47%), Positives = 225/402 (55%), Gaps = 72/402 (17%)
Frame = -3
Query: 1130 FLNGELGWNH----HRRSFSVTDLAVDAGGGFGWRPCLYFARGYCKNGTSCRFLHG-IPD 966
F G LGW + HRRS SV++L + G GW+PCLY+ARGYCKNG++CRF+HG + D
Sbjct: 201 FPYGALGWANGGPGHRRSSSVSELCLGGADGLGWKPCLYYARGYCKNGSACRFVHGGLTD 260
Query: 965 DAGAMTKLESPVKNQRASQLMA-------SAFPYSPTSS--------PKSMSFLFHPQSE 831
DA A K+++ Q+ ++ +AFPYSPT S K +S L H Q +
Sbjct: 261 DATA--KMDTATLEQQCQDILLRSKSQRLAAFPYSPTGSVPGSPSAATKCLSLLLHQQQQ 318
Query: 830 S----------------------------PRVSAMRIESLVNPGSRQIYLTFPADSTFRE 735
PR+ + SLVNPGSRQIYLTFPADSTFRE
Sbjct: 319 QNENQRVAAAAAAAALMLGGDDAHKFIGRPRLDRADLASLVNPGSRQIYLTFPADSTFRE 378
Query: 734 EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYK 555
EDVSNYFSIYGPV DVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHF+CDARVLVKPYK
Sbjct: 379 EDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYK 438
Query: 554 EKGKVPDKFRK----------------DSREPY-DLQHLVSPGSARILYSSGSSNNTQEA 426
EKGKVPDK+RK D RE + DL L AR+L S S+N E
Sbjct: 439 EKGKVPDKYRKQQLQGERAVDFFSNGLDGRENHLDLHQL----GARMLQHSHSAN---EM 491
Query: 425 LMXXXXXXXXXXXXXXXXXXXQGRRFMGLQLLDLKSRSFSS-----HSNPTN--XXXXXX 267
L+ Q RR MGLQLLDLK R+ S PT
Sbjct: 492 LL------RRKLEEQQQAMELQSRRLMGLQLLDLKPRASPSPIGNMPLGPTQRAVDSPPD 545
Query: 266 XXXXXESSGEVGINEDCVFQERSDEHNLPDNPFASPTKDTHL 141
S+G+ N D E+S EHNLPD+PFASPT+ L
Sbjct: 546 SGREESSAGDASPNAD---SEQSAEHNLPDSPFASPTRSAAL 584
Score = 103 bits (257), Expect = 1e-19
Identities = 49/65 (75%), Positives = 60/65 (92%)
Frame = -3
Query: 1520 MDAYEATRVVLSRIQALDPENAAKIMGFILIQDYGEKEMIRLAFGPESLLQSIVLKARIQ 1341
MDAYEAT+VV SRIQALDP++AAKIMGF+LIQD+GEKEMIRLAFGPE+LL +++ KAR
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKD 60
Query: 1340 LGIIP 1326
LG++P
Sbjct: 61 LGLLP 65
>ref|XP_002463401.1| hypothetical protein SORBIDRAFT_02g043180 [Sorghum bicolor]
gi|241926778|gb|EER99922.1| hypothetical protein
SORBIDRAFT_02g043180 [Sorghum bicolor]
Length = 702
Score = 296 bits (759), Expect = 7e-78
Identities = 191/424 (45%), Positives = 229/424 (54%), Gaps = 98/424 (23%)
Frame = -3
Query: 1130 FLNGELGWNH-----HRRSFSVTDLAVDAGGGFGWRPCLYFARGYCKNGTSCRFLHG-IP 969
F G LGW + HRRS SV++L + G GW+PCLY+ARGYCKNG++CRF+HG +P
Sbjct: 208 FPYGGLGWANGGGPGHRRSSSVSELCLGGADGLGWKPCLYYARGYCKNGSACRFVHGGLP 267
Query: 968 DDAGAMT--KLESPVKNQ---------RASQLMASAFPYSPTSS--------PKSMSFLF 846
DDA A+ K+++ Q ++ +L A+AFPYSPT S K +S L
Sbjct: 268 DDATALAGAKMDTATLEQQCQDILLRSKSQRLAAAAFPYSPTGSLPGSPSAATKCLSLLL 327
Query: 845 HPQSES-------------------------PRVSAMRIESLVNPGSRQIYLTFPADSTF 741
Q PR+ + S++NPGSRQIYLTFPADSTF
Sbjct: 328 QQQQNENRRHAAAAAAALMLGGDDAHKFLGRPRLDRADLASMMNPGSRQIYLTFPADSTF 387
Query: 740 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKP 561
REEDVSNYFSIYGPV DVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHF+CDARVLVKP
Sbjct: 388 REEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKP 447
Query: 560 YKEKGKVPDKFRK--------------DSREPYDLQHLVSPGSARILYSSGSSNNTQEAL 423
YKEKGKVPDK+RK D+R+ +DL L AR+L S S+N + L
Sbjct: 448 YKEKGKVPDKYRKQQLQGERVDFSNGLDARDHFDLHQL----GARMLQHSHSAN--EMLL 501
Query: 422 MXXXXXXXXXXXXXXXXXXXQGRRFMGLQLLDLKSRSFSS----HSNPT----------- 288
Q RR MGLQLLDLK+RS S +PT
Sbjct: 502 RRKLEEQQQQAAELQQAMELQSRRLMGLQLLDLKTRSSPSPIGMPFSPTRAVASATVESP 561
Query: 287 -------------------NXXXXXXXXXXXESSGEVGINEDCVFQERSDEHNLPDNPFA 165
ES+G+ N D ++S EHNLPD+PFA
Sbjct: 562 PDSGEHGPKGSSGFFLPQRGERPAVNGGDKEESAGDASPNAD---GDQSAEHNLPDSPFA 618
Query: 164 SPTK 153
SPTK
Sbjct: 619 SPTK 622
Score = 103 bits (257), Expect = 1e-19
Identities = 49/65 (75%), Positives = 60/65 (92%)
Frame = -3
Query: 1520 MDAYEATRVVLSRIQALDPENAAKIMGFILIQDYGEKEMIRLAFGPESLLQSIVLKARIQ 1341
MDAYEAT+VV SRIQALDP++AAKIMGF+LIQD+GEKEMIRLAFGPE+LL +++ KAR
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKD 60
Query: 1340 LGIIP 1326
LG++P
Sbjct: 61 LGLLP 65