BLASTX nr result

ID: Dioscorea21_contig00001488 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00001488
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277909.1| PREDICTED: photosystem II 5 kDa protein, chl...    68   9e-10
ref|NP_001235677.1| uncharacterized protein LOC100527666 [Glycin...    60   2e-07
ref|XP_002517817.1| Photosystem II 5 kDa protein, chloroplast pr...    60   2e-07
ref|XP_003546892.1| PREDICTED: photosystem II 5 kDa protein, chl...    58   9e-07
gb|AFK47048.1| unknown [Lotus japonicus]                               57   1e-06

>ref|XP_002277909.1| PREDICTED: photosystem II 5 kDa protein, chloroplastic [Vitis
           vinifera] gi|147792102|emb|CAN66292.1| hypothetical
           protein VITISV_027031 [Vitis vinifera]
          Length = 109

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = +3

Query: 168 MADEPKPGTPEAKKIYAPICVTMPTAKVCHK 260
           MA EPKPGTPEAKKIYAPICVTMPTAK+CHK
Sbjct: 79  MAGEPKPGTPEAKKIYAPICVTMPTAKICHK 109


>ref|NP_001235677.1| uncharacterized protein LOC100527666 [Glycine max]
           gi|255632908|gb|ACU16808.1| unknown [Glycine max]
          Length = 104

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 25/29 (86%), Positives = 28/29 (96%)
 Frame = +3

Query: 168 MADEPKPGTPEAKKIYAPICVTMPTAKVC 254
           +ADEPKPGTPEAKK YAPICVTMPTA++C
Sbjct: 74  VADEPKPGTPEAKKKYAPICVTMPTARIC 102


>ref|XP_002517817.1| Photosystem II 5 kDa protein, chloroplast precursor, putative
           [Ricinus communis] gi|223543089|gb|EEF44624.1|
           Photosystem II 5 kDa protein, chloroplast precursor,
           putative [Ricinus communis]
          Length = 104

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = +3

Query: 171 ADEPKPGTPEAKKIYAPICVTMPTAKVCHK 260
           A+EPK GTPEAKK Y+P+CVTMPTA++CHK
Sbjct: 75  AEEPKAGTPEAKKFYSPVCVTMPTARICHK 104


>ref|XP_003546892.1| PREDICTED: photosystem II 5 kDa protein, chloroplastic-like
           [Glycine max]
          Length = 105

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +3

Query: 168 MADEPKPGTPEAKKIYAPICVTMPTAKVC 254
           +ADEPKPGTP AKK YAPICVTMPTA++C
Sbjct: 75  VADEPKPGTPAAKKKYAPICVTMPTARIC 103


>gb|AFK47048.1| unknown [Lotus japonicus]
          Length = 107

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +3

Query: 168 MADEPKPGTPEAKKIYAPICVTMPTAKVCHK 260
           +ADEPK G+PEAKK YAP+CVTMPTA+VC K
Sbjct: 73  LADEPKNGSPEAKKKYAPVCVTMPTARVCRK 103


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