BLASTX nr result
ID: Dioscorea21_contig00001296
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00001296
(370 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD18921.1| RNA-binding protein precursor [Persea americana] 192 3e-47
ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group] g... 190 9e-47
gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativ... 190 9e-47
emb|CBI14910.3| unnamed protein product [Vitis vinifera] 185 3e-45
ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 185 3e-45
>emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 192 bits (487), Expect = 3e-47
Identities = 94/119 (78%), Positives = 106/119 (89%), Gaps = 2/119 (1%)
Frame = -2
Query: 369 FHRYDVGGRLLTVNKAAPRGTRPER--REYEPSFRIYAGNLPWQVDDARLEQVFSEYGKV 196
F+RYD+ GRLLTVNKAAPRG R +R R +EP+FR+Y GNLPWQVDDARLEQVFSE+GKV
Sbjct: 182 FNRYDINGRLLTVNKAAPRGARVDRPPRAFEPAFRMYVGNLPWQVDDARLEQVFSEHGKV 241
Query: 195 EEARVVYDRETGRSRGFGFVKMATQTGMDDAIAALDGHTLDGRALRVNVAEERPRRRPF 19
EARVVYDRETGRSRGFGFV M+TQT +DDAIAALDG +LDGRA+RVNVAE+RPRR F
Sbjct: 242 VEARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVAEDRPRRASF 300
Score = 72.8 bits (177), Expect = 3e-11
Identities = 35/82 (42%), Positives = 52/82 (63%)
Frame = -2
Query: 273 RIYAGNLPWQVDDARLEQVFSEYGKVEEARVVYDRETGRSRGFGFVKMATQTGMDDAIAA 94
+++ GNLP+ VD L ++F + G VE A V+Y+RET +SRGFGFV M+T + A+
Sbjct: 122 KLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEM 181
Query: 93 LDGHTLDGRALRVNVAEERPRR 28
+ + ++GR L VN A R R
Sbjct: 182 FNRYDINGRLLTVNKAAPRGAR 203
>ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic
acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic
acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa
Japonica Group] gi|215697272|dbj|BAG91266.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein
OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein
OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 190 bits (483), Expect = 9e-47
Identities = 96/119 (80%), Positives = 104/119 (87%), Gaps = 2/119 (1%)
Frame = -2
Query: 369 FHRYDVGGRLLTVNKAAPRGTRPER--REYEPSFRIYAGNLPWQVDDARLEQVFSEYGKV 196
FHRYDV GRLLTVNKAAPRG R ER R++ PSFRIY GNLPWQVDD+RL Q+FSE+GKV
Sbjct: 204 FHRYDVDGRLLTVNKAAPRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKV 263
Query: 195 EEARVVYDRETGRSRGFGFVKMATQTGMDDAIAALDGHTLDGRALRVNVAEERPRRRPF 19
+ARVVYDRETGRSRGFGFV MATQ +DDAIAALDG +LDGRALRVNVAEERP RR F
Sbjct: 264 VDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEERPPRRGF 322
Score = 78.6 bits (192), Expect = 5e-13
Identities = 38/82 (46%), Positives = 52/82 (63%)
Frame = -2
Query: 273 RIYAGNLPWQVDDARLEQVFSEYGKVEEARVVYDRETGRSRGFGFVKMATQTGMDDAIAA 94
++Y GNLP+ +D RL Q+F + G VE + V+Y+RET RSRGFGFV M+T + A+
Sbjct: 144 KVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 203
Query: 93 LDGHTLDGRALRVNVAEERPRR 28
+ +DGR L VN A R R
Sbjct: 204 FHRYDVDGRLLTVNKAAPRGAR 225
>gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 190 bits (483), Expect = 9e-47
Identities = 96/119 (80%), Positives = 104/119 (87%), Gaps = 2/119 (1%)
Frame = -2
Query: 369 FHRYDVGGRLLTVNKAAPRGTRPER--REYEPSFRIYAGNLPWQVDDARLEQVFSEYGKV 196
FHRYDV GRLLTVNKAAPRG R ER R++ PSFRIY GNLPWQVDD+RL Q+FSE+GKV
Sbjct: 68 FHRYDVDGRLLTVNKAAPRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKV 127
Query: 195 EEARVVYDRETGRSRGFGFVKMATQTGMDDAIAALDGHTLDGRALRVNVAEERPRRRPF 19
+ARVVYDRETGRSRGFGFV MATQ +DDAIAALDG +LDGRALRVNVAEERP RR F
Sbjct: 128 VDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEERPPRRGF 186
Score = 78.6 bits (192), Expect = 5e-13
Identities = 38/82 (46%), Positives = 52/82 (63%)
Frame = -2
Query: 273 RIYAGNLPWQVDDARLEQVFSEYGKVEEARVVYDRETGRSRGFGFVKMATQTGMDDAIAA 94
++Y GNLP+ +D RL Q+F + G VE + V+Y+RET RSRGFGFV M+T + A+
Sbjct: 8 KVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 67
Query: 93 LDGHTLDGRALRVNVAEERPRR 28
+ +DGR L VN A R R
Sbjct: 68 FHRYDVDGRLLTVNKAAPRGAR 89
>emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 185 bits (470), Expect = 3e-45
Identities = 90/119 (75%), Positives = 104/119 (87%), Gaps = 2/119 (1%)
Frame = -2
Query: 369 FHRYDVGGRLLTVNKAAPRGTRPER--REYEPSFRIYAGNLPWQVDDARLEQVFSEYGKV 196
FHRY++ GRLLTVNKAAPRG++PER R +EP+FR+Y GNLPW VD ARLEQVFSE+GKV
Sbjct: 188 FHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKV 247
Query: 195 EEARVVYDRETGRSRGFGFVKMATQTGMDDAIAALDGHTLDGRALRVNVAEERPRRRPF 19
EARVV+DRETGRSRGFGFV M++QT ++DAIAA DG TLDGR +RVNVAEERPRR F
Sbjct: 248 VEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPRRSAF 306
Score = 78.6 bits (192), Expect = 5e-13
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Frame = -2
Query: 273 RIYAGNLPWQVDDARLEQVFSEYGKVEEARVVYDRETGRSRGFGFVKMATQTGMDDAIAA 94
+++ GNLP+ VD RL ++F + G VE A V+Y+RET RSRGFGFV M+T + A+
Sbjct: 128 KVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDM 187
Query: 93 LDGHTLDGRALRVNVAEER---PRRRP 22
+ LDGR L VN A R P R P
Sbjct: 188 FHRYELDGRLLTVNKAAPRGSQPERPP 214
>ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 185 bits (470), Expect = 3e-45
Identities = 90/119 (75%), Positives = 104/119 (87%), Gaps = 2/119 (1%)
Frame = -2
Query: 369 FHRYDVGGRLLTVNKAAPRGTRPER--REYEPSFRIYAGNLPWQVDDARLEQVFSEYGKV 196
FHRY++ GRLLTVNKAAPRG++PER R +EP+FR+Y GNLPW VD ARLEQVFSE+GKV
Sbjct: 209 FHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKV 268
Query: 195 EEARVVYDRETGRSRGFGFVKMATQTGMDDAIAALDGHTLDGRALRVNVAEERPRRRPF 19
EARVV+DRETGRSRGFGFV M++QT ++DAIAA DG TLDGR +RVNVAEERPRR F
Sbjct: 269 VEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPRRSAF 327
Score = 78.6 bits (192), Expect = 5e-13
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Frame = -2
Query: 273 RIYAGNLPWQVDDARLEQVFSEYGKVEEARVVYDRETGRSRGFGFVKMATQTGMDDAIAA 94
+++ GNLP+ VD RL ++F + G VE A V+Y+RET RSRGFGFV M+T + A+
Sbjct: 149 KVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDM 208
Query: 93 LDGHTLDGRALRVNVAEER---PRRRP 22
+ LDGR L VN A R P R P
Sbjct: 209 FHRYELDGRLLTVNKAAPRGSQPERPP 235