BLASTX nr result
ID: Dioscorea21_contig00001269
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00001269
(1220 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267134.1| PREDICTED: E3 ubiquitin-protein ligase RING1... 277 3e-72
emb|CAN79596.1| hypothetical protein VITISV_042386 [Vitis vinifera] 277 3e-72
ref|XP_002329726.1| predicted protein [Populus trichocarpa] gi|1... 276 8e-72
ref|XP_002317728.1| predicted protein [Populus trichocarpa] gi|2... 273 5e-71
gb|ACT21194.1| zinc finger protein [Carica papaya] 273 6e-71
>ref|XP_002267134.1| PREDICTED: E3 ubiquitin-protein ligase RING1 isoform 1 [Vitis
vinifera] gi|359491811|ref|XP_003634328.1| PREDICTED: E3
ubiquitin-protein ligase RING1 isoform 2 [Vitis vinifera]
Length = 369
Score = 277 bits (709), Expect = 3e-72
Identities = 154/332 (46%), Positives = 179/332 (53%), Gaps = 18/332 (5%)
Frame = +2
Query: 71 QRYFCHQCDRTVLITPDPDTDLVCPLCHGGFIEEFDLXXXXXXXXXXXXXXXXXXXXXXX 250
Q YFC+QC+ TV ITP P +D +CP C+ GF+EE +
Sbjct: 23 QSYFCYQCNLTVSITPSPTSDPLCPHCNDGFLEEVE--------------NPNPNPIPVP 68
Query: 251 XXXXXXXXXXXXXXXXXXXXQTAFDV----RQASDLTDFLNSDRFPPIPSLDGTEAFNPL 418
TAF A D NS FP + D +AF+P
Sbjct: 69 IPNPFLGFSDLPSLSAAGATATAFPPLVFSTAAGGSIDLQNSVDFPGLFGAD-PDAFHPF 127
Query: 419 AFLENYLNSLTAGGANIQVVLEGAPP---LPAGANLGDYFIGPGLEQLIQQLAENDPNRY 589
AFL+NYL +L AGG N+Q V++G P NLGDYFIGPGLEQLIQQLAENDPNRY
Sbjct: 128 AFLQNYLQTLRAGGTNVQFVIDGNSPEGTFRLSPNLGDYFIGPGLEQLIQQLAENDPNRY 187
Query: 590 GTPPASKSAVLGLPDVLISAELLASDDAQCAVCRDTFEIGAEAKQMPCRHIYHKDCILPW 769
GTPPASKSA+ GLP + I+ ELL +D +QCAVC+D+FE+ EAKQMPC+HIYH DCILPW
Sbjct: 188 GTPPASKSAIEGLPTIRITVELLGTDSSQCAVCKDSFELDEEAKQMPCKHIYHNDCILPW 247
Query: 770 LELHNSCPVCRYELPTDDPDYEQR-----------RGVXXXXXXXXXXXXXXXXXXXXXX 916
LELHNSCPVCRYELPTDDPDYE R
Sbjct: 248 LELHNSCPVCRYELPTDDPDYEHRTRGGQVNQTGGNAAAVAAAGAASNSASGAAGGAAVS 307
Query: 917 XXXXXXPTQRMVERRFRISLPWPLRMSGSQAE 1012
T R +R FRIS PWP R GS AE
Sbjct: 308 GENPNPQTPRTADRMFRISFPWPFRTFGSPAE 339
>emb|CAN79596.1| hypothetical protein VITISV_042386 [Vitis vinifera]
Length = 371
Score = 277 bits (709), Expect = 3e-72
Identities = 154/332 (46%), Positives = 179/332 (53%), Gaps = 18/332 (5%)
Frame = +2
Query: 71 QRYFCHQCDRTVLITPDPDTDLVCPLCHGGFIEEFDLXXXXXXXXXXXXXXXXXXXXXXX 250
Q YFC+QC+ TV ITP P +D +CP C+ GF+EE +
Sbjct: 25 QSYFCYQCNLTVSITPSPTSDPLCPHCNDGFLEEVE--------------NPNPNPIPVP 70
Query: 251 XXXXXXXXXXXXXXXXXXXXQTAFDV----RQASDLTDFLNSDRFPPIPSLDGTEAFNPL 418
TAF A D NS FP + D +AF+P
Sbjct: 71 IPNPFLGFSDLPSLSAAGATATAFPPLVFSTAAGGSIDLQNSVDFPGLFGAD-PDAFHPF 129
Query: 419 AFLENYLNSLTAGGANIQVVLEGAPP---LPAGANLGDYFIGPGLEQLIQQLAENDPNRY 589
AFL+NYL +L AGG N+Q V++G P NLGDYFIGPGLEQLIQQLAENDPNRY
Sbjct: 130 AFLQNYLQTLRAGGTNVQFVIDGNSPEGTFRLSPNLGDYFIGPGLEQLIQQLAENDPNRY 189
Query: 590 GTPPASKSAVLGLPDVLISAELLASDDAQCAVCRDTFEIGAEAKQMPCRHIYHKDCILPW 769
GTPPASKSA+ GLP + I+ ELL +D +QCAVC+D+FE+ EAKQMPC+HIYH DCILPW
Sbjct: 190 GTPPASKSAIEGLPTIRITVELLGTDSSQCAVCKDSFELDEEAKQMPCKHIYHNDCILPW 249
Query: 770 LELHNSCPVCRYELPTDDPDYEQR-----------RGVXXXXXXXXXXXXXXXXXXXXXX 916
LELHNSCPVCRYELPTDDPDYE R
Sbjct: 250 LELHNSCPVCRYELPTDDPDYEHRTRGGQVNQTGGNAAAVAAAGAASNSASGAAGGAAVS 309
Query: 917 XXXXXXPTQRMVERRFRISLPWPLRMSGSQAE 1012
T R +R FRIS PWP R GS AE
Sbjct: 310 GENPNPQTPRTADRMFRISFPWPFRTFGSPAE 341
>ref|XP_002329726.1| predicted protein [Populus trichocarpa] gi|118486397|gb|ABK95038.1|
unknown [Populus trichocarpa] gi|222870634|gb|EEF07765.1|
predicted protein [Populus trichocarpa]
Length = 345
Score = 276 bits (706), Expect = 8e-72
Identities = 156/327 (47%), Positives = 181/327 (55%), Gaps = 13/327 (3%)
Frame = +2
Query: 71 QRYFCHQCDRTVLITPDPDTDLVCPLCHGGFIEEFDLXXXXXXXXXXXXXXXXXXXXXXX 250
Q YFC+QC+RTV ITP P T L CP CH GF+EE D
Sbjct: 10 QLYFCYQCNRTVTITP-PTTALSCPNCHEGFLEELDSPNPSPNPFDAGLGPALLLDDFAS 68
Query: 251 XXXXXXXXXXXXXXXXXXXXQTAFDVRQASDLTDFLNSDRFPPIPSLDGTEAFNPLAFLE 430
R ++ T NS P+ + FNP FL+
Sbjct: 69 IFGGMNPTP-----------------RSSTTSTTATNSSSASPL--FQDPDGFNPFVFLQ 109
Query: 431 NYLNSLTAGGANIQVVLEGAPPL----PAG----ANLGDYFIGPGLEQLIQQLAENDPNR 586
NYL ++ AGGANIQ V+E P + P G ANLGDYFIGPGLEQLIQQLAENDPNR
Sbjct: 110 NYLQTMRAGGANIQFVIENNPGMGGMDPTGFRVPANLGDYFIGPGLEQLIQQLAENDPNR 169
Query: 587 YGTPPASKSAVLGLPDVLISAELLASDDAQCAVCRDTFEIGAEAKQMPCRHIYHKDCILP 766
YGTPPA+KSAV LPDV ++ EL+ SD +QCAVC+D+FE+G AKQ+PC+HIYHKDCI+P
Sbjct: 170 YGTPPAAKSAVENLPDVKVTEELMQSDSSQCAVCKDSFELGEVAKQIPCKHIYHKDCIMP 229
Query: 767 WLELHNSCPVCRYELPTDDPDYEQRRGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTQR 946
WLELHNSCPVCRYELPTDD DYEQR+G Q
Sbjct: 230 WLELHNSCPVCRYELPTDDQDYEQRKG-NGSNGVNQNVGGGINSGGSISDGDNSDGNAQT 288
Query: 947 MVERRFRISLPWPL-----RMSGSQAE 1012
ERRFRI PWP R +GS AE
Sbjct: 289 PRERRFRIPFPWPFSSGTGRSAGSSAE 315
>ref|XP_002317728.1| predicted protein [Populus trichocarpa] gi|222858401|gb|EEE95948.1|
predicted protein [Populus trichocarpa]
Length = 323
Score = 273 bits (699), Expect = 5e-71
Identities = 155/319 (48%), Positives = 180/319 (56%), Gaps = 8/319 (2%)
Frame = +2
Query: 71 QRYFCHQCDRTVLITPDPDTDLVCPLCHGGFIEEFDLXXXXXXXXXXXXXXXXXXXXXXX 250
Q YFC+QCDRTV ITP P +DL CP C GF+EE +
Sbjct: 11 QLYFCYQCDRTVTITPSPTSDLSCPNCQEGFLEECESPNPSSNPVDSGLGPAILLDEFAS 70
Query: 251 XXXXXXXXXXXXXXXXXXXXQTAFDVRQASDLTDFLNSDRFPPIPSLDGTEAFNPLAFLE 430
A R +++ T +S P DG FNP AFL+
Sbjct: 71 IFGGM-----------------APTPRSSNNSTTTNSSSASPLFQDPDG---FNPFAFLQ 110
Query: 431 NYLNSLTAGGANIQVVLEGAPPLPA--------GANLGDYFIGPGLEQLIQQLAENDPNR 586
NYL ++ AGGANIQ V+E + ANLGDYFIGPGLEQLIQQLAENDPNR
Sbjct: 111 NYLQTMRAGGANIQFVIENNSGMGGMDTTGFRLPANLGDYFIGPGLEQLIQQLAENDPNR 170
Query: 587 YGTPPASKSAVLGLPDVLISAELLASDDAQCAVCRDTFEIGAEAKQMPCRHIYHKDCILP 766
YGTPPASKSAV LPD+ ++ ELL SD +QCAVC+D+FE+G EAKQ+PC+HIYHKDCI P
Sbjct: 171 YGTPPASKSAVENLPDIKVTKELLESDSSQCAVCKDSFELGEEAKQIPCKHIYHKDCITP 230
Query: 767 WLELHNSCPVCRYELPTDDPDYEQRRGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTQR 946
WLELHNSCPVCRYELPTDDPDYEQR+G T R
Sbjct: 231 WLELHNSCPVCRYELPTDDPDYEQRKG------------------------NGNDVVTPR 266
Query: 947 MVERRFRISLPWPLRMSGS 1003
+RRFRI+ WP SGS
Sbjct: 267 --DRRFRIAFQWPF-SSGS 282
>gb|ACT21194.1| zinc finger protein [Carica papaya]
Length = 340
Score = 273 bits (698), Expect = 6e-71
Identities = 162/375 (43%), Positives = 188/375 (50%), Gaps = 16/375 (4%)
Frame = +2
Query: 71 QRYFCHQCDRTVLITPDP--DTDLVCPLCHGGFIEEFDLXXXXXXXXXXXXXXXXXXXXX 244
Q YFC+QC+RTV I+P P +DL+CP C+GGF+EE +
Sbjct: 6 QPYFCYQCNRTVRISPSPCPSSDLLCPTCNGGFLEELE---------------------- 43
Query: 245 XXXXXXXXXXXXXXXXXXXXXXQTAFDVRQASDLTDFLNSDRFPPIPSL--DGTEAFNPL 418
+ DL+ F PP + + TE FNP
Sbjct: 44 -NPNPNQQTLNLNPFDSPFPFLSSPNSPHPFDDLSAFFGGMVPPPSATARPNDTEVFNPF 102
Query: 419 AFLENYLNSLTAGGANIQVVLEGAPP----------LPAGANLGDYFIGPGLEQLIQQLA 568
FL+NYL +L A GANIQ V+E P LP NLGDYF+GPGLEQLIQQLA
Sbjct: 103 LFLQNYLQTLRANGANIQFVIENNSPGGSGPSGAFRLPGSLNLGDYFLGPGLEQLIQQLA 162
Query: 569 ENDPNRYGTPPASKSAVLGLPDVLISAELLASDDAQCAVCRDTFEIGAEAKQMPCRHIYH 748
ENDPNR+GTPPASKSA+ LP + I E+ SD +QCAVC+D+F + EAKQMPC+HIYH
Sbjct: 163 ENDPNRHGTPPASKSAIEALPTIKIFQEMPDSDSSQCAVCKDSFALAEEAKQMPCKHIYH 222
Query: 749 KDCILPWLELHNSCPVCRYELPTDDPDYEQRRGVXXXXXXXXXXXXXXXXXXXXXXXXXX 928
CILPWLELHNSCPVCRYELPTDD DYE R
Sbjct: 223 SQCILPWLELHNSCPVCRYELPTDDADYEHRTRANRTPAQNVSGSTDAVNAVADGNAGNR 282
Query: 929 XXP-TQRMVERRFRISLPWPLRMS-GSQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1102
P T R VERRFRI LPWP R S GS AE
Sbjct: 283 DNPETPRSVERRFRIFLPWPFRSSFGSGAE-----------------TSNSGTSGGDADT 325
Query: 1103 GSGDSRSEPRHEDMD 1147
G SEPRHED+D
Sbjct: 326 NPGSRGSEPRHEDLD 340