BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00001140
         (540 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                 205   3e-51
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   202   3e-50
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]   201   6e-50
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   201   8e-50
gb|AAP43919.1| integrase [Gossypium hirsutum]                         201   8e-50

>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score =  205 bits (522), Expect = 3e-51
 Identities = 100/183 (54%), Positives = 128/183 (69%), Gaps = 3/183 (1%)
 Frame = -1

Query: 540  NRRHALWVEFLQAYSFVIKHKAGSQNQVADALSRRHTLLSTMQINVVGFEVLKELYKDDP 361
            N RHA WVEFLQ+++F  K+K G +N VADALSRRH+LLS M   V+GFE +KELYK+DP
Sbjct: 992  NFRHAKWVEFLQSFTFSSKYKEGKKNVVADALSRRHSLLSVMSNRVLGFEFMKELYKEDP 1051

Query: 360  YFGTLWENCLKGPYKQ---FFLQNGFLFKGNCLCIPQCSVRDAILMEAHDSNLGGHFGRN 190
             F   W    +G   Q   + LQ GFLF+GN LC+P+ S RD ++ E H   +GGHFG  
Sbjct: 1052 DFSEEWITQTEGHKNQGSKYLLQEGFLFQGNKLCVPRGSYRDLLIREVHSGGMGGHFGVQ 1111

Query: 189  KTLAIIKDKFYWPKMEKDVMRHVKKCNICQMAKSHSQNTGLYTPLPVPQAPWEDASMDFV 10
            KTL I++D+FYWP+M  DV   +++C+ CQ++KS  Q  G YTPLPVP  PWED SMDF+
Sbjct: 1112 KTLEILQDQFYWPRMMGDVQIILRRCSKCQLSKSSFQ-PGPYTPLPVPSKPWEDLSMDFI 1170

Query: 9    VGL 1
            V L
Sbjct: 1171 VAL 1173


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 889

 Score =  202 bits (513), Expect = 3e-50
 Identities = 96/181 (53%), Positives = 121/181 (66%), Gaps = 1/181 (0%)
 Frame = -1

Query: 540 NRRHALWVEFLQAYSFVIKHKAGSQNQVADALSRRHTLLSTMQINVVGFEVLKELYKDDP 361
           NRRHA WVEF++++ +VIKHK G +N +ADALSRR+ +LS +   + G E +KE Y  D 
Sbjct: 436 NRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDD 495

Query: 360 YFGTLWENCLKG-PYKQFFLQNGFLFKGNCLCIPQCSVRDAILMEAHDSNLGGHFGRNKT 184
            F  +  NC++G  + +F L NGF+F+ N LCIP  SVR  +L EAH   L GHFG  KT
Sbjct: 496 DFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKT 555

Query: 183 LAIIKDKFYWPKMEKDVMRHVKKCNICQMAKSHSQNTGLYTPLPVPQAPWEDASMDFVVG 4
             I+ D F+WPKM +DV R V +C  CQ AKS     GLY PLPVP  PWED SMDFV+G
Sbjct: 556 EDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLG 615

Query: 3   L 1
           L
Sbjct: 616 L 616


>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
          Length = 1521

 Score =  201 bits (511), Expect = 6e-50
 Identities = 92/183 (50%), Positives = 125/183 (68%), Gaps = 3/183 (1%)
 Frame = -1

Query: 540  NRRHALWVEFLQAYSFVIKHKAGSQNQVADALSRRHTLLSTMQINVVGFEVLKELYKDDP 361
            N RHA W  FLQ ++F +KH AG +N+VADALSR+  LL  M    +GFE LK  Y +D 
Sbjct: 999  NSRHAKWSSFLQLFTFNLKHCAGIENKVADALSRKALLLVNMSTTTIGFEELKHCYDNDA 1058

Query: 360  YFGTLWENCLKGPYK---QFFLQNGFLFKGNCLCIPQCSVRDAILMEAHDSNLGGHFGRN 190
             FG ++ + L G       F +  G+LF  N LC+P+ S+RD ++ E H   +GGHFGR+
Sbjct: 1059 DFGDVYSSLLSGSKATCIDFQILEGYLFYKNRLCLPRTSLRDHVIWELHGGGMGGHFGRD 1118

Query: 189  KTLAIIKDKFYWPKMEKDVMRHVKKCNICQMAKSHSQNTGLYTPLPVPQAPWEDASMDFV 10
            KT+A+++D+F+WP ++KDV + +K+C  CQ+ K   QNTGLYTPLPVP  PWED SMDFV
Sbjct: 1119 KTIALVEDRFFWPSLKKDVWKVIKQCRACQVGKGSKQNTGLYTPLPVPSKPWEDLSMDFV 1178

Query: 9    VGL 1
            +GL
Sbjct: 1179 LGL 1181


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  201 bits (510), Expect = 8e-50
 Identities = 96/181 (53%), Positives = 120/181 (66%), Gaps = 1/181 (0%)
 Frame = -1

Query: 540  NRRHALWVEFLQAYSFVIKHKAGSQNQVADALSRRHTLLSTMQINVVGFEVLKELYKDDP 361
            NRRHA WVEF++++ +VIKHK G +N +ADALSRR+ +LS +   + G E +KE Y  D 
Sbjct: 1123 NRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDD 1182

Query: 360  YFGTLWENCLKG-PYKQFFLQNGFLFKGNCLCIPQCSVRDAILMEAHDSNLGGHFGRNKT 184
             F  +  NC +G  + +F L NGF+F+ N LCIP  SVR  +L EAH   L GHFG  KT
Sbjct: 1183 DFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKT 1242

Query: 183  LAIIKDKFYWPKMEKDVMRHVKKCNICQMAKSHSQNTGLYTPLPVPQAPWEDASMDFVVG 4
              I+ D F+WPKM +DV R V +C  CQ AKS     GLY PLPVP  PWED SMDFV+G
Sbjct: 1243 EDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLG 1302

Query: 3    L 1
            L
Sbjct: 1303 L 1303


>gb|AAP43919.1| integrase [Gossypium hirsutum]
          Length = 334

 Score =  201 bits (510), Expect = 8e-50
 Identities = 90/180 (50%), Positives = 131/180 (72%)
 Frame = -1

Query: 540 NRRHALWVEFLQAYSFVIKHKAGSQNQVADALSRRHTLLSTMQINVVGFEVLKELYKDDP 361
           ++RHA WVEF++ + ++I++K G+ N VADALSRR+TL++T+   V+GFE +KELY DD 
Sbjct: 66  SKRHARWVEFIETFPYMIQYKIGNDNVVADALSRRYTLITTLNAKVLGFEHIKELYDDDT 125

Query: 360 YFGTLWENCLKGPYKQFFLQNGFLFKGNCLCIPQCSVRDAILMEAHDSNLGGHFGRNKTL 181
            F  +++NC    +++F+L +G LF+ N LCIP+CS+R+ ++ EAH   L GHFG  KTL
Sbjct: 126 DFSHIYKNCGHTAFEKFYLVDGLLFRLNRLCIPKCSMRELLIHEAHSGGLMGHFGVAKTL 185

Query: 180 AIIKDKFYWPKMEKDVMRHVKKCNICQMAKSHSQNTGLYTPLPVPQAPWEDASMDFVVGL 1
            I+++ F+WP M+KDV +   KC  C+ AKS     GLYTPLP+P +PW D SMDF++GL
Sbjct: 186 DILQEHFHWPHMKKDVEKVCSKCITCKQAKSKVMLHGLYTPLPIPTSPWVDLSMDFILGL 245