BLASTX nr result
ID: Dioscorea21_contig00001061
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00001061
(1656 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003558051.1| PREDICTED: probable pre-mRNA-splicing factor... 868 0.0
ref|NP_001148911.1| pre-mRNA-splicing factor ATP-dependent RNA h... 867 0.0
ref|NP_001049931.1| Os03g0314100 [Oryza sativa Japonica Group] g... 866 0.0
gb|ABF95605.1| Pre-mRNA splicing factor ATP-dependent RNA helica... 866 0.0
gb|ACN28016.1| unknown [Zea mays] gi|414866511|tpg|DAA45068.1| T... 862 0.0
>ref|XP_003558051.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
helicase-like [Brachypodium distachyon]
Length = 719
Score = 868 bits (2242), Expect = 0.0
Identities = 440/519 (84%), Positives = 466/519 (89%)
Frame = +3
Query: 99 MGTERKRKVSLFDVVDDTSVSAKISRTNGRSPAAAAVSSTVNRWSGRPYSQRYFEILEKR 278
MGTERKRKVSLFDVVD+TSVSAK+ R G + AAAA + ++N+W+GRPYS RY EILEKR
Sbjct: 1 MGTERKRKVSLFDVVDETSVSAKLGRA-GVNGAAAAANPSINKWNGRPYSARYLEILEKR 59
Query: 279 RTLPVWQQKEEFLHALKDNQVLVLVGETGSGKTTQIPQFVLECDDLSKRPIVACTQPXXX 458
RTLPVWQQKEEFL AL+DNQ L+LVGETGSGKTTQIPQFVLE + LS R +VACTQP
Sbjct: 60 RTLPVWQQKEEFLRALRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPRRV 119
Query: 459 XXXXXXXXXXEEMDVTIGEEVGYSIRFEDCSGPKTILKYLTDGMLLREAMADPLLERYKV 638
EEMDVTIGEEVGYSIRFEDCS KT+LKYLTDGMLLREAMADPLLERYKV
Sbjct: 120 AAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERYKV 179
Query: 639 IILDEAHERTLATDVLFGLLKEVLKNRDDLKLVVMSATLEAEKFQDYFNDAPLMKVPGRL 818
I+LDEAHERTLATDVLFGLLKEVLKNR DLKLVVMSATLEAEKFQ YF+ APLMKVPGRL
Sbjct: 180 IVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSSAPLMKVPGRL 239
Query: 819 HPVDLFYTPEPEADYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEINNLG 998
HPV++FYT EPE DYLEAAIRTVVQIHMCEP GDILVFLTGEEEIEDACRKI KE+NN+G
Sbjct: 240 HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEVNNMG 299
Query: 999 DQVGPVKAVPLYSTLPPAMQQKIFEAAXXXXXXXXXXXRKIVVSTNIAETSLTIDGIVYV 1178
DQVGPVK VPLYSTLPPAMQQKIFE A RKIVVSTNIAETSLTIDGIVYV
Sbjct: 300 DQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIVYV 359
Query: 1179 IDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQP 1358
IDPGFSKQKVYNPRIRVESLLVSPISKASAHQR+GRAGRTQPGKCFRLYTEKSFN+DL P
Sbjct: 360 IDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNDDLHP 419
Query: 1359 QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNMT 1538
QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGN+T
Sbjct: 420 QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLT 479
Query: 1539 KLGEIMSEFPLDPQMAKMLVVSPDFNCSNEILSISAMLS 1655
LGE+MSEFPLDPQM+KMLV+SP +NCSNEILSISAMLS
Sbjct: 480 SLGEMMSEFPLDPQMSKMLVISPRYNCSNEILSISAMLS 518
>ref|NP_001148911.1| pre-mRNA-splicing factor ATP-dependent RNA helicase [Zea mays]
gi|195623176|gb|ACG33418.1| pre-mRNA-splicing factor
ATP-dependent RNA helicase [Zea mays]
gi|413955897|gb|AFW88546.1| putative RNA helicase family
protein [Zea mays]
Length = 722
Score = 867 bits (2240), Expect = 0.0
Identities = 439/521 (84%), Positives = 465/521 (89%), Gaps = 2/521 (0%)
Frame = +3
Query: 99 MGTERKRKVSLFDVVDDTSVSAKISR--TNGRSPAAAAVSSTVNRWSGRPYSQRYFEILE 272
MGTERKRKVSLFDVVD+TSVS K+ R +NG + AA + +VNRW+GRPY+ RYFEILE
Sbjct: 1 MGTERKRKVSLFDVVDETSVSGKLGRAASNGAAATAAGTNPSVNRWNGRPYTARYFEILE 60
Query: 273 KRRTLPVWQQKEEFLHALKDNQVLVLVGETGSGKTTQIPQFVLECDDLSKRPIVACTQPX 452
KRRTLPVWQQKEEFL L+DNQ L+LVGETGSGKTTQIPQFVLE + L R +VACTQP
Sbjct: 61 KRRTLPVWQQKEEFLRRLRDNQTLILVGETGSGKTTQIPQFVLETEGLGNRSMVACTQPR 120
Query: 453 XXXXXXXXXXXXEEMDVTIGEEVGYSIRFEDCSGPKTILKYLTDGMLLREAMADPLLERY 632
EEMDVTIGEEVGYSIRFEDCS KT+LKYLTDGMLLREAMADPLLE+Y
Sbjct: 121 RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKY 180
Query: 633 KVIILDEAHERTLATDVLFGLLKEVLKNRDDLKLVVMSATLEAEKFQDYFNDAPLMKVPG 812
KVI+LDEAHERTLATDVLFGLLKEVLKNR DLKLVVMSATLEAEKFQ YF+DAPLMKVPG
Sbjct: 181 KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSDAPLMKVPG 240
Query: 813 RLHPVDLFYTPEPEADYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEINN 992
RLHPV++FYT EPE DYLEAAIRTVVQIHMCEP GDILVFLTGEEEIEDACRKI KEINN
Sbjct: 241 RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINN 300
Query: 993 LGDQVGPVKAVPLYSTLPPAMQQKIFEAAXXXXXXXXXXXRKIVVSTNIAETSLTIDGIV 1172
+GDQVGPVK VPLYSTLPPAMQQKIFE A RKIVVSTNIAETSLTIDGIV
Sbjct: 301 MGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLKERGPPGRKIVVSTNIAETSLTIDGIV 360
Query: 1173 YVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDL 1352
YVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQR+GRAGRTQPGKCFRLYTEKSFN DL
Sbjct: 361 YVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDL 420
Query: 1353 QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGN 1532
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL ALDDEGN
Sbjct: 421 QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDEGN 480
Query: 1533 MTKLGEIMSEFPLDPQMAKMLVVSPDFNCSNEILSISAMLS 1655
+T+LGE+MSEFPLDPQM+KMLV+SP +NCSNEILSISAMLS
Sbjct: 481 LTQLGEMMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLS 521
>ref|NP_001049931.1| Os03g0314100 [Oryza sativa Japonica Group]
gi|108707809|gb|ABF95604.1| Pre-mRNA splicing factor
ATP-dependent RNA helicase, putative, expressed [Oryza
sativa Japonica Group] gi|113548402|dbj|BAF11845.1|
Os03g0314100 [Oryza sativa Japonica Group]
gi|215694063|dbj|BAG89262.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 564
Score = 866 bits (2237), Expect = 0.0
Identities = 442/522 (84%), Positives = 467/522 (89%), Gaps = 3/522 (0%)
Frame = +3
Query: 99 MGTERKRKVSLFDVVDDTSVSAKISR---TNGRSPAAAAVSSTVNRWSGRPYSQRYFEIL 269
MGTERKRKVSLFDVVD+TSVSAK+ R TNG S AAAA + ++NRW+GRPYS RY EIL
Sbjct: 1 MGTERKRKVSLFDVVDETSVSAKLGRAATTNG-SAAAAAANPSINRWTGRPYSARYLEIL 59
Query: 270 EKRRTLPVWQQKEEFLHALKDNQVLVLVGETGSGKTTQIPQFVLECDDLSKRPIVACTQP 449
EKRRTLPVWQQK++FL L+DNQ L+LVGETGSGKTTQIPQFVLE + LS R +VACTQP
Sbjct: 60 EKRRTLPVWQQKDDFLAVLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQP 119
Query: 450 XXXXXXXXXXXXXEEMDVTIGEEVGYSIRFEDCSGPKTILKYLTDGMLLREAMADPLLER 629
EEMDVTIGEEVGYSIRFEDCS KT+LKYLTDGMLLREAMADPLLER
Sbjct: 120 RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLER 179
Query: 630 YKVIILDEAHERTLATDVLFGLLKEVLKNRDDLKLVVMSATLEAEKFQDYFNDAPLMKVP 809
YKVI+LDEAHERTLATDVLFGLLKEVLKNR DLKLVVMSATLEAEKFQ YF+ APLMKVP
Sbjct: 180 YKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQTYFSGAPLMKVP 239
Query: 810 GRLHPVDLFYTPEPEADYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEIN 989
GRLHPV++FYT EPE DYLEAAIRTVVQIHMCEP GDILVFLTGEEEIEDACRKI KEIN
Sbjct: 240 GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEIN 299
Query: 990 NLGDQVGPVKAVPLYSTLPPAMQQKIFEAAXXXXXXXXXXXRKIVVSTNIAETSLTIDGI 1169
N+GDQVGPVK VPLYSTLPPAMQQKIFE A RKIVVSTNIAETSLTIDGI
Sbjct: 300 NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGI 359
Query: 1170 VYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND 1349
VYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQR+GRAGRTQPGKCFRLYTEKSFN+D
Sbjct: 360 VYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNDD 419
Query: 1350 LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG 1529
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD+G
Sbjct: 420 LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDG 479
Query: 1530 NMTKLGEIMSEFPLDPQMAKMLVVSPDFNCSNEILSISAMLS 1655
N+T LGE MSEFPLDPQM+KMLV+SP +NCSNEILSISAMLS
Sbjct: 480 NLTPLGETMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLS 521
>gb|ABF95605.1| Pre-mRNA splicing factor ATP-dependent RNA helicase, putative,
expressed [Oryza sativa Japonica Group]
Length = 722
Score = 866 bits (2237), Expect = 0.0
Identities = 442/522 (84%), Positives = 467/522 (89%), Gaps = 3/522 (0%)
Frame = +3
Query: 99 MGTERKRKVSLFDVVDDTSVSAKISR---TNGRSPAAAAVSSTVNRWSGRPYSQRYFEIL 269
MGTERKRKVSLFDVVD+TSVSAK+ R TNG S AAAA + ++NRW+GRPYS RY EIL
Sbjct: 1 MGTERKRKVSLFDVVDETSVSAKLGRAATTNG-SAAAAAANPSINRWTGRPYSARYLEIL 59
Query: 270 EKRRTLPVWQQKEEFLHALKDNQVLVLVGETGSGKTTQIPQFVLECDDLSKRPIVACTQP 449
EKRRTLPVWQQK++FL L+DNQ L+LVGETGSGKTTQIPQFVLE + LS R +VACTQP
Sbjct: 60 EKRRTLPVWQQKDDFLAVLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQP 119
Query: 450 XXXXXXXXXXXXXEEMDVTIGEEVGYSIRFEDCSGPKTILKYLTDGMLLREAMADPLLER 629
EEMDVTIGEEVGYSIRFEDCS KT+LKYLTDGMLLREAMADPLLER
Sbjct: 120 RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLER 179
Query: 630 YKVIILDEAHERTLATDVLFGLLKEVLKNRDDLKLVVMSATLEAEKFQDYFNDAPLMKVP 809
YKVI+LDEAHERTLATDVLFGLLKEVLKNR DLKLVVMSATLEAEKFQ YF+ APLMKVP
Sbjct: 180 YKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQTYFSGAPLMKVP 239
Query: 810 GRLHPVDLFYTPEPEADYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEIN 989
GRLHPV++FYT EPE DYLEAAIRTVVQIHMCEP GDILVFLTGEEEIEDACRKI KEIN
Sbjct: 240 GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEIN 299
Query: 990 NLGDQVGPVKAVPLYSTLPPAMQQKIFEAAXXXXXXXXXXXRKIVVSTNIAETSLTIDGI 1169
N+GDQVGPVK VPLYSTLPPAMQQKIFE A RKIVVSTNIAETSLTIDGI
Sbjct: 300 NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGI 359
Query: 1170 VYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND 1349
VYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQR+GRAGRTQPGKCFRLYTEKSFN+D
Sbjct: 360 VYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNDD 419
Query: 1350 LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG 1529
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD+G
Sbjct: 420 LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDG 479
Query: 1530 NMTKLGEIMSEFPLDPQMAKMLVVSPDFNCSNEILSISAMLS 1655
N+T LGE MSEFPLDPQM+KMLV+SP +NCSNEILSISAMLS
Sbjct: 480 NLTPLGETMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLS 521
>gb|ACN28016.1| unknown [Zea mays] gi|414866511|tpg|DAA45068.1| TPA: putative RNA
helicase family protein [Zea mays]
Length = 721
Score = 862 bits (2227), Expect = 0.0
Identities = 435/520 (83%), Positives = 465/520 (89%), Gaps = 1/520 (0%)
Frame = +3
Query: 99 MGTERKRKVSLFDVVDDTSVSAKI-SRTNGRSPAAAAVSSTVNRWSGRPYSQRYFEILEK 275
MGTERKRKVSLFDVVD+TSVSAK+ + +NG + A + +VNRW+GRPY+ RYF+ILEK
Sbjct: 1 MGTERKRKVSLFDVVDETSVSAKLRAASNGAAATATGGNPSVNRWNGRPYTARYFDILEK 60
Query: 276 RRTLPVWQQKEEFLHALKDNQVLVLVGETGSGKTTQIPQFVLECDDLSKRPIVACTQPXX 455
RRTLPVWQQKEEFL +L+DNQ L+LVGETGSGKTTQIPQFVLE + L R +VACTQP
Sbjct: 61 RRTLPVWQQKEEFLRSLRDNQTLILVGETGSGKTTQIPQFVLETEGLGNRSMVACTQPRR 120
Query: 456 XXXXXXXXXXXEEMDVTIGEEVGYSIRFEDCSGPKTILKYLTDGMLLREAMADPLLERYK 635
EEMDVTIGEEVGYSIRFEDCS KT+LKYLTDGMLLREAMADPLLE+YK
Sbjct: 121 VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKYK 180
Query: 636 VIILDEAHERTLATDVLFGLLKEVLKNRDDLKLVVMSATLEAEKFQDYFNDAPLMKVPGR 815
VI+LDEAHERTLATDVLFGLLKEVLKNR DLKLVVMSATLEAEKFQ YFN APLMKVPGR
Sbjct: 181 VIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNGAPLMKVPGR 240
Query: 816 LHPVDLFYTPEPEADYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEINNL 995
LHPV++FYT EPE DYLEAAIRTV+QIHMCEP GDILVFLTGEEEIEDACRKI KE NN+
Sbjct: 241 LHPVEIFYTQEPERDYLEAAIRTVMQIHMCEPAGDILVFLTGEEEIEDACRKINKETNNM 300
Query: 996 GDQVGPVKAVPLYSTLPPAMQQKIFEAAXXXXXXXXXXXRKIVVSTNIAETSLTIDGIVY 1175
GDQVGPVK VPLYSTLPPAMQQKIFE A RKIVVSTNIAETSLTIDGIVY
Sbjct: 301 GDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIVY 360
Query: 1176 VIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQ 1355
VIDPGFSKQKVYNPRIRVESLLVSPISKASAHQR+GRAGRTQPGKCFRLYTEKSFN DLQ
Sbjct: 361 VIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDLQ 420
Query: 1356 PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNM 1535
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGN+
Sbjct: 421 PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNL 480
Query: 1536 TKLGEIMSEFPLDPQMAKMLVVSPDFNCSNEILSISAMLS 1655
T+LGE+MSEFPLDPQM+KMLV+SP +NCSNEILS+SAMLS
Sbjct: 481 TQLGEMMSEFPLDPQMSKMLVISPKYNCSNEILSVSAMLS 520