BLASTX nr result
ID: Dioscorea21_contig00001060
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00001060
(2138 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containi... 349 1e-93
ref|XP_002516159.1| pentatricopeptide repeat-containing protein,... 348 3e-93
ref|XP_002324203.1| predicted protein [Populus trichocarpa] gi|2... 342 2e-91
ref|XP_002309456.1| predicted protein [Populus trichocarpa] gi|2... 335 4e-89
gb|ABK96374.1| unknown [Populus trichocarpa x Populus deltoides] 335 4e-89
>ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 349 bits (896), Expect = 1e-93
Identities = 204/407 (50%), Positives = 260/407 (63%), Gaps = 27/407 (6%)
Frame = +1
Query: 391 MSLSIKGISTNKDTKSTLPNKVTSLNPNAAEFVPSSLRYSFGNANRAD-STRLDSTGTSR 567
MSLS KG N + K KVT+LNPNAAEFVP +LR S G+ + D S R +GT
Sbjct: 1 MSLSKKGNPIN-NIKLDSTAKVTTLNPNAAEFVPFALRSSSGSTSTGDASARFTPSGTLG 59
Query: 568 KAVLDRSESAISNNSDEEAHQFWRHQLPDDITPDFKAMGENESQETGHLSLRGLSIHDGG 747
KA LDRSES+ISNNSDEEAHQ+WR QLPDDITPDFK MGE+ESQ G LSL GLS+HD
Sbjct: 60 KAKLDRSESSISNNSDEEAHQYWRCQLPDDITPDFKVMGEDESQALGGLSLAGLSLHDST 119
Query: 748 EIPRFSALTG-----SQILDTHHDNSDALGLAEDVRYSGSTFAGDHSVGIFGPSATNTWD 912
E RFSA +G Q L HH N ++ + +RYS S + D S F WD
Sbjct: 120 ETSRFSAGSGYILNEQQELSPHHVNGNSF--TDKMRYSASPYGEDPSSATFLHLPNKPWD 177
Query: 913 ELFVNRDQYLNDQRE------DPNSSFLTDLVDQATFQDAT-INAVEFLASQFPGFSAES 1071
+ V+ DQ L++ RE + F+ D++++ D T +N +EFLA QFPGF+AES
Sbjct: 178 KQIVHGDQLLSNGREGTPYNGNSRHGFVNDMLNEHAMVDETDMNPLEFLALQFPGFAAES 237
Query: 1072 LAEVYYANDYDLDSTIETLTQLELQVDGSHSQNLNSKASISPNLNQQDFPALPLAKAQNG 1251
L EVY+AN+ DL+ TIE LTQLELQVDG SQN+NSK +PNL+ DFP+LP+ QNG
Sbjct: 238 LTEVYFANECDLNMTIEMLTQLELQVDGGFSQNMNSKTLSAPNLSGLDFPSLPVPDGQNG 297
Query: 1252 FSKLNADDIGQTPSPYTSSNVFG-------------GATDYASTMRKLPSQESGPWKYGR 1392
K DDI Q +PY SS+ GATD+AS +RKL +Q+SG WK+ R
Sbjct: 298 LPKYAGDDIQQGVNPYRSSDKDNLLMFKSNSSIPSRGATDFASAVRKLATQDSGIWKFDR 357
Query: 1393 NGFADVRIGSSRVPQLIANS-QTGHEKMVYGDKVQSAHAAQVAPVWL 1530
NG ADV +GSSR ++A+S +GH + YGD++Q+ +A+VAP W+
Sbjct: 358 NGTADVNVGSSRSSHVLASSYNSGHGRGTYGDRLQNRGSARVAPAWV 404
Score = 173 bits (439), Expect = 1e-40
Identities = 94/138 (68%), Positives = 109/138 (78%), Gaps = 6/138 (4%)
Frame = +3
Query: 1668 REAYLIGNKALAKELSVKGQLYSIQMKTAHVKAREAIYRQRNPVSSENQSYGKGQEHLID 1847
++AYLIGNKALAKELS+KG+L+SI MK AH KA+EAIYRQRNPVS E Q +G E +ID
Sbjct: 436 QQAYLIGNKALAKELSLKGKLHSIHMKAAHGKAQEAIYRQRNPVSPELQGNARG-ERMID 494
Query: 1848 LHGLHVNDALHVLKHELEALRTVTRSTGQRLQVMICV-----TRGSRTPARLPGAVEHYL 2012
LHGLHV++A+HVLKHEL LR+ RS QRLQV ICV TRGSRTPARLP AV+ YL
Sbjct: 495 LHGLHVSEAIHVLKHELNVLRSTARSADQRLQVYICVGTGHHTRGSRTPARLPVAVQRYL 554
Query: 2013 L-EENLHYSQPQPGLLHV 2063
L EE L Y++PQ GLL V
Sbjct: 555 LEEEGLDYTEPQAGLLRV 572
>ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544645|gb|EEF46161.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1439
Score = 348 bits (894), Expect = 3e-93
Identities = 203/413 (49%), Positives = 265/413 (64%), Gaps = 33/413 (7%)
Frame = +1
Query: 391 MSLSIKGISTNKDTKSTLPNKVTSLNPNAAEFVPSSLRY----SFGNANRADST-RLDST 555
MSLS KG TN TK +P+K T+LNPNAAEFVP SLR S +N A +T R ++
Sbjct: 1 MSLSKKGSQTNT-TKLNIPSKATALNPNAAEFVPFSLRSLSSPSGSTSNAAATTARFATS 59
Query: 556 GTSRKAVLDRSESAISNNSDEEAHQFWRHQLPDDITPDFKAMGENESQETGHLSLRGLSI 735
G KAVLDRSES+IS SDEEAHQFWRHQLPDDITPDFK MGE+ESQ G LSL GLS+
Sbjct: 60 GPVGKAVLDRSESSISTTSDEEAHQFWRHQLPDDITPDFKVMGEDESQSLGGLSLAGLSL 119
Query: 736 HDGGEIPRFSALTGSQILDTHHDNS-----DALGLAEDVRYSGSTFAGDH-SVGIFGPSA 897
HD E+P+F A GS + T + +E +RY+ +++ D S +
Sbjct: 120 HDSSEVPKFPASVGSGYILTEQQEPSPRHINGSSFSEKMRYAIASYGEDPTSAAGYLNLP 179
Query: 898 TNTWDELFVNRDQYLNDQRE------DPNSSFLTDLV-DQATFQDATINAVEFLASQFPG 1056
T WD+ +N D L + RE + F+ D++ +QA + +N ++FLAS FPG
Sbjct: 180 TKPWDKQIINNDHLLGNGREVHPYNGNSRRGFMNDMLGEQAIVDEPDMNPLDFLASHFPG 239
Query: 1057 FSAESLAEVYYANDYDLDSTIETLTQLELQVDGSHSQNLNSKASISPNLNQQDFPALPLA 1236
F+AESLAEVY+AN YDL+ TIE LTQLELQVDG +QN+NSKA +PNL+ DFPALP+
Sbjct: 240 FAAESLAEVYFANGYDLNLTIEMLTQLELQVDGGFNQNMNSKALSAPNLSAMDFPALPVP 299
Query: 1237 KAQNGFSKLNADDIGQTPSPYTSS---NVF-----------GGATDYASTMRKLPSQESG 1374
+QN SK + DDI Q+ +PY SS N+ GGA D+AS +RKL SQ+SG
Sbjct: 300 DSQNSPSKYSGDDIQQSGNPYRSSDKENILLFKSSSSTPSRGGAIDFASAVRKLASQDSG 359
Query: 1375 PWKYGRNGFADVRIGSSRVPQLIANS-QTGHEKMVYGDKVQSAHAAQVAPVWL 1530
WKY RNG AD +GSSR ++A+S +G+ + +Y ++ Q+ +A+ APVWL
Sbjct: 360 IWKYERNGSADSAVGSSRSSHVLASSYSSGNGRGIYSERAQNRGSARAAPVWL 412
Score = 180 bits (457), Expect = 1e-42
Identities = 93/136 (68%), Positives = 110/136 (80%), Gaps = 6/136 (4%)
Frame = +3
Query: 1668 REAYLIGNKALAKELSVKGQLYSIQMKTAHVKAREAIYRQRNPVSSENQSYGKGQEHLID 1847
R+AYLIGNKALAKELSVKGQL+++ MK AH KA+E+IYR RNP+SSE Q G+G E +ID
Sbjct: 444 RQAYLIGNKALAKELSVKGQLHNMHMKAAHGKAQESIYRLRNPISSEMQGNGRGHERMID 503
Query: 1848 LHGLHVNDALHVLKHELEALRTVTRSTGQRLQVMICV-----TRGSRTPARLPGAVEHYL 2012
LHGLHV++A+HVLKHEL LR+ R+ QRLQV ICV TRGSRTPARLP AV+ YL
Sbjct: 504 LHGLHVSEAIHVLKHELSVLRSTARAADQRLQVYICVGTGHHTRGSRTPARLPIAVQQYL 563
Query: 2013 L-EENLHYSQPQPGLL 2057
L EE L Y++PQPGLL
Sbjct: 564 LEEEGLDYTEPQPGLL 579
>ref|XP_002324203.1| predicted protein [Populus trichocarpa] gi|222865637|gb|EEF02768.1|
predicted protein [Populus trichocarpa]
Length = 583
Score = 342 bits (877), Expect = 2e-91
Identities = 206/414 (49%), Positives = 262/414 (63%), Gaps = 34/414 (8%)
Frame = +1
Query: 391 MSLSIKGISTNKDTKSTLPNKVTSLNPNAAEFVPSSLRYSFG----NANRADS-TRLDST 555
M+LS KG TN DTK +LPNK T+LNPNAAEFVP SLR S +N D+ T+L ++
Sbjct: 1 MNLSKKGSLTN-DTKLSLPNKATTLNPNAAEFVPFSLRSSSSPSGSTSNTTDAATKLATS 59
Query: 556 GTSRKAVLDRSESAISNNSDEEAHQFWRHQLPDDITPDFKAMGENESQETGHLSLRGLSI 735
GT K+VLDRSES++SN SD+EAHQFWRHQLPDDITPDFK M E+ESQ G LSL GLS+
Sbjct: 60 GTVGKSVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMNEDESQGLGGLSLAGLSL 119
Query: 736 HDGGEIPRFSA-------LTGSQILDTHHDNSDALGLAEDVRYSGSTFAGDHSVGIFGPS 894
HD E+PRF A LT Q HH N + +E++RY+ +++ D + F
Sbjct: 120 HDSSEVPRFHASSRSGYVLTEQQEPSPHHINGSS--FSENMRYAVASYGEDPTSASFLNL 177
Query: 895 ATNTWDELFVNRDQYLNDQRE------DPNSSFLTDLV-DQATFQDATINAVEFLASQFP 1053
T WD+ N DQ L++ RE + F ++++ + A D IN +EFLASQFP
Sbjct: 178 PTKPWDKQIANSDQLLSNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLEFLASQFP 237
Query: 1054 GFSAESLAEVYYANDYDLDSTIETLTQLELQVDGSHSQNLNSKASISP-NLNQQDFPALP 1230
GF+AESLAEVY+AN DL+ TIE LTQLELQVDG +Q NSK +P NL+ DFPAL
Sbjct: 238 GFAAESLAEVYFANACDLNLTIEMLTQLELQVDGGFNQTTNSKTVSAPTNLSALDFPALT 297
Query: 1231 LAKAQNGFSKLNADDIGQTPSPYTSSN-----VF--------GGATDYASTMRKLPSQES 1371
+ QNG SK DD+ Q PY SSN VF GA D+AS +RKL SQ+S
Sbjct: 298 VPDNQNGPSKYAGDDLQQAGIPYRSSNKDNMLVFKSGASFSSRGAVDFASAVRKLASQDS 357
Query: 1372 GPWKYGRNGFADVRIGSSRVPQLIANSQT-GHEKMVYGDKVQSAHAAQVAPVWL 1530
W + RNG AD +GSSR ++A++ + GH + +Y D+ QS + Q APVWL
Sbjct: 358 SMWNHDRNGSADSTVGSSRSSHVLASAYSGGHGRGIYADRSQSRGSGQAAPVWL 411
Score = 182 bits (462), Expect = 3e-43
Identities = 94/141 (66%), Positives = 111/141 (78%), Gaps = 6/141 (4%)
Frame = +3
Query: 1668 REAYLIGNKALAKELSVKGQLYSIQMKTAHVKAREAIYRQRNPVSSENQSYGKGQEHLID 1847
R+AYLIGNKALAKELS KGQL+++ MK AH KA+E+IYRQRNP S E Q G+G E +ID
Sbjct: 443 RQAYLIGNKALAKELSAKGQLHNMHMKEAHGKAQESIYRQRNPASLEMQGTGRGHERMID 502
Query: 1848 LHGLHVNDALHVLKHELEALRTVTRSTGQRLQVMICV-----TRGSRTPARLPGAVEHYL 2012
LHGLHV +A+HVLKHEL LR+ R+ QRLQV ICV TRG+RTPARLP AV+ YL
Sbjct: 503 LHGLHVTEAIHVLKHELSILRSTARAADQRLQVYICVGTGHHTRGARTPARLPVAVQRYL 562
Query: 2013 L-EENLHYSQPQPGLLHVVIY 2072
L EE L Y++PQPGLL VV+Y
Sbjct: 563 LEEEGLDYTEPQPGLLRVVMY 583
>ref|XP_002309456.1| predicted protein [Populus trichocarpa] gi|222855432|gb|EEE92979.1|
predicted protein [Populus trichocarpa]
Length = 581
Score = 335 bits (858), Expect = 4e-89
Identities = 201/413 (48%), Positives = 254/413 (61%), Gaps = 33/413 (7%)
Frame = +1
Query: 391 MSLSIKGISTNKDTKSTLPNKVTSLNPNAAEFVPSSLRYSFG----NANRADS-TRLDST 555
MSLS KG TN DTK LP+K T+LNPNAAEFVP SLR S +N AD+ T+ ++
Sbjct: 1 MSLSKKGSLTN-DTKLNLPSKATTLNPNAAEFVPFSLRSSSSPSGSTSNSADAATKFTTS 59
Query: 556 GTSRKAVLDRSESAISNNSDEEAHQFWRHQLPDDITPDFKAMGENESQETGHLSLRGLSI 735
GT KAVLDRSES++SN SD+EAHQFWRHQLPDDITPDFK M ++ESQ G LSL GLS+
Sbjct: 60 GTVGKAVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMSDDESQGLGGLSLAGLSL 119
Query: 736 HDGGEIPRFSA-------LTGSQILDTHHDNSDALGLAEDVRYSGSTFAGDHSVGIFGPS 894
HD E+PRF A LT Q H N + G E +RY +++ D S F
Sbjct: 120 HDS-EVPRFHASSRSGYVLTEQQEPSPRHMNGSSFG--EKMRYPSASYGEDPSSASFLNL 176
Query: 895 ATNTWDELFVNRDQYLNDQRE------DPNSSFLTDLV-DQATFQDATINAVEFLASQFP 1053
T WD+ N D L + RE + F ++++ + A D IN + FLASQFP
Sbjct: 177 PTKPWDKQIANGDHLLGNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLGFLASQFP 236
Query: 1054 GFSAESLAEVYYANDYDLDSTIETLTQLELQVDGSHSQNLNSKASISPNLNQQDFPALPL 1233
GF+ ESLAEVY+A+ DL+ T+E LTQLELQVDGS +QN NSK +PNL+ DFPAL +
Sbjct: 237 GFATESLAEVYFASGCDLNLTVEMLTQLELQVDGSFNQNTNSKTLSAPNLSALDFPALTV 296
Query: 1234 AKAQNGFSKLNADDIGQTPSPYTSSNVFG-------------GATDYASTMRKLPSQESG 1374
QNG SK DD+ Q PY SSN GA D+AS +RKL SQ+S
Sbjct: 297 LDNQNGSSKYTGDDLQQASVPYRSSNKDNMLLFKPGGSFSSRGAVDFASAVRKLASQDSS 356
Query: 1375 PWKYGRNGFADVRIGSSRVPQLIANSQ-TGHEKMVYGDKVQSAHAAQVAPVWL 1530
WK+ RNG AD +GSSR ++ ++ GH + +Y D++QS + + APVWL
Sbjct: 357 MWKHDRNGSADSTVGSSRSSHVLPSAYGGGHGRGIYADRLQSRGSGRQAPVWL 409
Score = 182 bits (463), Expect = 2e-43
Identities = 95/141 (67%), Positives = 111/141 (78%), Gaps = 6/141 (4%)
Frame = +3
Query: 1668 REAYLIGNKALAKELSVKGQLYSIQMKTAHVKAREAIYRQRNPVSSENQSYGKGQEHLID 1847
R+AYLIGNKALAKELSVKGQL+++ MK AH KA+E+IY QRNPVS E Q G+G E +ID
Sbjct: 441 RQAYLIGNKALAKELSVKGQLHNMHMKEAHGKAQESIYHQRNPVSLEMQGTGRGHEQMID 500
Query: 1848 LHGLHVNDALHVLKHELEALRTVTRSTGQRLQVMICV-----TRGSRTPARLPGAVEHYL 2012
LHGLHV +A+HVLKHEL LR+ ++ QRLQV ICV TRGSRTPARLP AV+ YL
Sbjct: 501 LHGLHVTEAIHVLKHELSVLRSTAQAADQRLQVYICVGTGHHTRGSRTPARLPVAVQRYL 560
Query: 2013 L-EENLHYSQPQPGLLHVVIY 2072
L EE L Y++P PGLL VVIY
Sbjct: 561 LEEEGLDYTEPHPGLLRVVIY 581
>gb|ABK96374.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 581
Score = 335 bits (858), Expect = 4e-89
Identities = 201/413 (48%), Positives = 254/413 (61%), Gaps = 33/413 (7%)
Frame = +1
Query: 391 MSLSIKGISTNKDTKSTLPNKVTSLNPNAAEFVPSSLRYSFG----NANRADS-TRLDST 555
MSLS KG TN DTK LP+K T+LNPNAAEFVP SLR S +N AD+ T+ ++
Sbjct: 1 MSLSKKGSLTN-DTKLNLPSKATTLNPNAAEFVPFSLRSSSSPSGSTSNSADAATKFTTS 59
Query: 556 GTSRKAVLDRSESAISNNSDEEAHQFWRHQLPDDITPDFKAMGENESQETGHLSLRGLSI 735
GT KAVLDRSES++SN SD+EAHQFWRHQLPDDITPDFK M ++ESQ G LSL GLS+
Sbjct: 60 GTVGKAVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMSDDESQGLGGLSLAGLSL 119
Query: 736 HDGGEIPRFSA-------LTGSQILDTHHDNSDALGLAEDVRYSGSTFAGDHSVGIFGPS 894
HD E+PRF A LT Q H N + G E +RY +++ D S F
Sbjct: 120 HDS-EVPRFHASSRSGYVLTEQQEPSPRHMNGSSFG--EKMRYPSASYGEDPSSASFLNL 176
Query: 895 ATNTWDELFVNRDQYLNDQRE------DPNSSFLTDLV-DQATFQDATINAVEFLASQFP 1053
T WD+ N D L + RE + F ++++ + A D IN + FLASQFP
Sbjct: 177 PTKPWDKQIANGDHLLGNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLGFLASQFP 236
Query: 1054 GFSAESLAEVYYANDYDLDSTIETLTQLELQVDGSHSQNLNSKASISPNLNQQDFPALPL 1233
GF+ ESLAEVY+A+ DL+ T+E LTQLELQVDGS +QN NSK +PNL+ DFPAL +
Sbjct: 237 GFATESLAEVYFASGCDLNLTVEMLTQLELQVDGSFNQNTNSKTLSAPNLSALDFPALTV 296
Query: 1234 AKAQNGFSKLNADDIGQTPSPYTSSNVFG-------------GATDYASTMRKLPSQESG 1374
QNG SK DD+ Q PY SSN GA D+AS +RKL SQ+S
Sbjct: 297 LDNQNGSSKYTGDDLQQASVPYRSSNKDNTLLFKPGGSFSSRGAVDFASAVRKLASQDSS 356
Query: 1375 PWKYGRNGFADVRIGSSRVPQLIANSQ-TGHEKMVYGDKVQSAHAAQVAPVWL 1530
WK+ RNG AD +GSSR ++ ++ GH + +Y D++QS + + APVWL
Sbjct: 357 MWKHDRNGSADSTVGSSRSSHVLPSAYGGGHGRGIYADRLQSRGSGRQAPVWL 409
Score = 182 bits (463), Expect = 2e-43
Identities = 95/141 (67%), Positives = 111/141 (78%), Gaps = 6/141 (4%)
Frame = +3
Query: 1668 REAYLIGNKALAKELSVKGQLYSIQMKTAHVKAREAIYRQRNPVSSENQSYGKGQEHLID 1847
R+AYLIGNKALAKELSVKGQL+++ MK AH KA+E+IY QRNPVS E Q G+G E +ID
Sbjct: 441 RQAYLIGNKALAKELSVKGQLHNMHMKEAHGKAQESIYHQRNPVSLEMQGTGRGHEQMID 500
Query: 1848 LHGLHVNDALHVLKHELEALRTVTRSTGQRLQVMICV-----TRGSRTPARLPGAVEHYL 2012
LHGLHV +A+HVLKHEL LR+ ++ QRLQV ICV TRGSRTPARLP AV+ YL
Sbjct: 501 LHGLHVTEAIHVLKHELSVLRSTAQAADQRLQVYICVGTGHHTRGSRTPARLPVAVQRYL 560
Query: 2013 L-EENLHYSQPQPGLLHVVIY 2072
L EE L Y++P PGLL VVIY
Sbjct: 561 LEEEGLDYTEPHPGLLRVVIY 581