BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00027472
         (594 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       175   1e-41
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   152   3e-38
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     151   8e-38
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...   149   3e-37
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   148   3e-36
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   152   6e-36
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   144   1e-35
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     144   1e-35
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]   154   3e-35
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   145   4e-35
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]     145   4e-35
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...   151   3e-34
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]     151   3e-34
emb|CBI20118.3| unnamed protein product [Vitis vinifera]              137   1e-33
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   149   1e-33
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D...   142   2e-33
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   140   2e-33
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...   140   2e-33
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]         137   3e-33
emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera]   133   2e-32

>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  175 bits (444), Expect = 1e-41
 Identities = 89/168 (52%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
           LGHI   R+ RL + G+L  L   +LP CE CL GK T++ F GKG RA  PL+L+HSD+
Sbjct: 449 LGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDL 508

Query: 417 CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
           CGPMNVKAR G  YFI+FIDD +R+G VYL+ HKSE+ + F++Y   VEN++ K+IK L 
Sbjct: 509 CGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLR 568

Query: 243 TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           +D+G EY+  +F +   E  I   L+ P T QQNGV+ERRN T+LDM+
Sbjct: 569 SDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMV 616


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  152 bits (384), Expect(2) = 3e-38
 Identities = 80/168 (47%), Positives = 114/168 (67%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594  LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
            LGHI ++RM +L  DG+L      +  TCE C+ GK T+ PF G+ +RAS  L LIH+D+
Sbjct: 532  LGHISEKRMKKLHDDGILNSFDLESFETCESCILGKMTKTPFTGRNERASDLLALIHTDV 591

Query: 417  CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
            CGPM+  AR G  YFITF DD +R+G +YL+ HKSE+ + F+++   V+NQL K+IK+L 
Sbjct: 592  CGPMSTTARGGFQYFITFTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGKTIKSLR 651

Query: 243  TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
            +D+G E+L ++F    ++  I   LT P T Q NGV+ER N T+LDM+
Sbjct: 652  SDRGGEFLSQEFGNHLKQCGIVPQLTPPSTPQWNGVSERCNRTLLDMV 699



 Score = 33.5 bits (75), Expect(2) = 3e-38
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = -2

Query: 98  LMMAQSNLPMSCLGDLLSTAAYILNRVHFTSV 3
           LMM+QS+LP+   G  L TAA+ LNRV   SV
Sbjct: 701 LMMSQSDLPLYFWGYALETAAFTLNRVPSKSV 732


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  151 bits (382), Expect(2) = 8e-38
 Identities = 81/168 (48%), Positives = 113/168 (67%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
           LGHI ++RM +L +DGLL      +  TCE CL GK T+ PF G  +RAS  L L+H+D+
Sbjct: 444 LGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDV 503

Query: 417 CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
           CGPM+  AR G  YFITF DD +R+G +YL+ HKSE+ + F+++   V+N L K+IK L 
Sbjct: 504 CGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLR 563

Query: 243 TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           +D+G EY+ ++F    ++  I   LT P T Q NGV+ERRN T+LDM+
Sbjct: 564 SDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMV 611



 Score = 32.7 bits (73), Expect(2) = 8e-38
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRVHFTSV 3
           MM+QS+LP+S  G  L TAA  LNRV   SV
Sbjct: 614 MMSQSDLPLSFWGYALETAALTLNRVPSKSV 644


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550379|gb|ABA93176.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 938

 Score =  149 bits (376), Expect(2) = 3e-37
 Identities = 82/168 (48%), Positives = 112/168 (66%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
           LGHI + RM +L RDGLL      +  TCE CL GK T+ PF G+ ++AS  L L+H+D+
Sbjct: 329 LGHINERRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSEKASELLGLVHTDV 388

Query: 417 CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
           CGPM+  AR G  YFITF +D +R+G VYL+ HKS++ + F+++   V+N L K+IK L 
Sbjct: 389 CGPMSSTARGGFGYFITFTNDFSRYGYVYLMRHKSDSFEKFKEFQNEVQNHLGKTIKYLR 448

Query: 243 TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           +D+G EYL  +F    +E  I   LT P T Q NGV+ERRN T+LDM+
Sbjct: 449 SDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDMV 496



 Score = 33.1 bits (74), Expect(2) = 3e-37
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRVHFTSV 3
           MM+Q++LP+S  G  L TAA+ LNRV   SV
Sbjct: 499 MMSQTDLPLSFWGYTLETAAFTLNRVPSKSV 529


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  148 bits (373), Expect(2) = 3e-36
 Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594  LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
            LGHI ++RM +L RDGLL  L   +  TCE CL GK T+ PF G+ +R S  L L+H+D+
Sbjct: 920  LGHINEKRMEKLHRDGLLHSLDFESFETCESCLLGKMTKAPFTGQSERTSELLVLVHTDV 979

Query: 417  CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
            CGPM+  AR G  YFITF DD +R+G VYL+ HKSE+ + F+++   V+N L K+IK L 
Sbjct: 980  CGPMSSTARCGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLRKTIKYLR 1039

Query: 243  TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
            +D G EYL  +F    +   I   LT P T Q NGV+ERRN T+L+M+
Sbjct: 1040 SDHGGEYLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNMV 1087



 Score = 31.2 bits (69), Expect(2) = 3e-36
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = -2

Query: 95   MMAQSNLPMSCLGDLLSTAAYILNRVHFTSV 3
            MM+Q+NL +S  G  L TAA+ LNRV   SV
Sbjct: 1090 MMSQTNLLLSFWGYALETAAFTLNRVPSKSV 1120


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  152 bits (384), Expect(2) = 6e-36
 Identities = 83/168 (49%), Positives = 110/168 (65%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
           LGHI ++ + +L  DGLL      +  TCE CL GK T+ PF G  +RAS  L LIH+D+
Sbjct: 88  LGHINEKHIQKLHSDGLLNSFDYESYETCESCLLGKMTKAPFTGHSERASDLLGLIHTDV 147

Query: 417 CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
           CGPM+  AR    YFITF DD +R+G VYL+ HKS++ + F+++   V+NQ  KSIKAL 
Sbjct: 148 CGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALR 207

Query: 243 TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           +D+G EYL + F +   E  I   LT P T Q NGV+ERRN T+LDM+
Sbjct: 208 SDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDMV 255



 Score = 25.8 bits (55), Expect(2) = 6e-36
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRVHFTSV 3
           MM+ ++LP    G  L T+A++LNR    SV
Sbjct: 258 MMSHTDLPSPFWGYALETSAFMLNRCPSKSV 288


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1248

 Score =  144 bits (364), Expect(2) = 1e-35
 Identities = 80/168 (47%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
           LGHI ++R+ +L RDGLL      +  TCE CL GK T+ PF G+ +RAS  L L+H+D+
Sbjct: 409 LGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLGLVHTDV 468

Query: 417 CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
           CGPM+  AR G  YFITF D+ +R+G VYL+ HKSE+ + F+++   V+N L K+IK L 
Sbjct: 469 CGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLR 528

Query: 243 TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           +D+G EYL  ++    +E  I   LT P T Q N V+ERRN  +LDM+
Sbjct: 529 SDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMV 576



 Score = 32.3 bits (72), Expect(2) = 1e-35
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRVHFTSV 3
           MM+Q+++P+S  G  L TAA+ LNRV   SV
Sbjct: 579 MMSQTDMPLSFWGYALETAAFTLNRVPSKSV 609


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  144 bits (364), Expect(2) = 1e-35
 Identities = 80/168 (47%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
           LGHI ++R+ +L RDGLL      +  TCE CL GK T+ PF G+ +RAS  L L+H+D+
Sbjct: 322 LGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLGLVHTDV 381

Query: 417 CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
           CGPM+  AR G  YFITF D+ +R+G VYL+ HKSE+ + F+++   V+N L K+IK L 
Sbjct: 382 CGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLR 441

Query: 243 TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           +D+G EYL  ++    +E  I   LT P T Q N V+ERRN  +LDM+
Sbjct: 442 SDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMV 489



 Score = 32.3 bits (72), Expect(2) = 1e-35
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRVHFTSV 3
           MM+Q+++P+S  G  L TAA+ LNRV   SV
Sbjct: 492 MMSQTDMPLSFWGYALETAAFTLNRVPSKSV 522


>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score =  154 bits (390), Expect = 3e-35
 Identities = 86/199 (43%), Positives = 122/199 (61%), Gaps = 3/199 (1%)
 Frame = -1

Query: 594  LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPFG-KGKRASFPLQLIHSDI 418
            LGHI  +R++ L +DG L  L    LPTCE CL GK T++PF  KG RA+  L+LIHSD+
Sbjct: 768  LGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELIHSDL 827

Query: 417  CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
            CGPM+V+AR G  YF+TF DD +R+G +YL+  KSE  + F+ +   +E +  K IK L 
Sbjct: 828  CGPMSVQARGGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFKAFKAEMEQRHGKYIKTLR 887

Query: 243  TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMIINDGAV*SSYVL 64
            +D G EY+  +F+    E+ I   L+ P   QQNGVAERRN T+++M+        S + 
Sbjct: 888  SDHGGEYISREFITFLSEQGITSQLSAPGMPQQNGVAERRNRTLMEMV-------RSMMS 940

Query: 63   FGRLTVNCCLHS*SCAFYI 7
            +  L ++   H+   A YI
Sbjct: 941  YSDLPISLWGHAIETAAYI 959


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1142

 Score =  145 bits (365), Expect(2) = 4e-35
 Identities = 82/168 (48%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
           LGHI ++RM +L RDGLL      +  T E CL GK T+ PF G+ +RAS  L L+H+D+
Sbjct: 496 LGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLGLVHTDV 555

Query: 417 CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
           CGPM+  AR G  YFITF DD +++G VYL+ HKSE+ + F+++   V+N L K+IK L 
Sbjct: 556 CGPMSSTARGGFGYFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLR 615

Query: 243 TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           +D+G EYL  +F    +E  I   LT P T Q N V+ERRN T+LDM+
Sbjct: 616 SDRGGEYLSLEFGNHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDMV 663



 Score = 30.4 bits (67), Expect(2) = 4e-35
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRVHFTSV 3
           MM+Q+NLP+S  G  L T A+ LN V   SV
Sbjct: 666 MMSQTNLPLSFSGYALETTAFTLNWVPSKSV 696


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score =  145 bits (365), Expect(2) = 4e-35
 Identities = 82/168 (48%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
           LGHI ++RM +L RDGLL      +  T E CL GK T+ PF G+ +RAS  L L+H+D+
Sbjct: 423 LGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLGLVHTDV 482

Query: 417 CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
           CGPM+  AR G  YFITF DD +++G VYL+ HKSE+ + F+++   V+N L K+IK L 
Sbjct: 483 CGPMSSTARGGFGYFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLR 542

Query: 243 TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           +D+G EYL  +F    +E  I   LT P T Q N V+ERRN T+LDM+
Sbjct: 543 SDRGGEYLSLEFGNHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDMV 590



 Score = 30.4 bits (67), Expect(2) = 4e-35
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRVHFTSV 3
           MM+Q+NLP+S  G  L T A+ LN V   SV
Sbjct: 593 MMSQTNLPLSFSGYALETTAFTLNWVPSKSV 623


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1073

 Score =  151 bits (381), Expect = 3e-34
 Identities = 86/168 (51%), Positives = 112/168 (66%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594  LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
            LGHI ++RM +L RDGLL      +  TCE CL GK T+ PF G+ KRAS  L L+H+D+
Sbjct: 536  LGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSKRASELLGLVHTDV 595

Query: 417  CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQYAVE--NQLDKSIKALI 244
            CGPM+  AR G  YFITF DD +R G VYL+ HKSE+++ F+++  E  N L K+IK L 
Sbjct: 596  CGPMSSTARGGFGYFITFTDDFSRCGYVYLMRHKSESVEKFKKFQNEEQNYLGKTIKYLR 655

Query: 243  TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
            +D+G EYL  +F    +E  I   LT P T Q NGV+ERRN T+LDM+
Sbjct: 656  SDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDML 703


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score =  151 bits (381), Expect = 3e-34
 Identities = 86/168 (51%), Positives = 112/168 (66%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594  LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
            LGHI ++RM +L RDGLL      +  TCE CL GK T+ PF G+ KRAS  L L+H+D+
Sbjct: 536  LGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSKRASELLGLVHTDV 595

Query: 417  CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQYAVE--NQLDKSIKALI 244
            CGPM+  AR G  YFITF DD +R G VYL+ HKSE+++ F+++  E  N L K+IK L 
Sbjct: 596  CGPMSSTARGGFGYFITFTDDFSRCGYVYLMRHKSESVEKFKKFQNEEQNYLGKTIKYLR 655

Query: 243  TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
            +D+G EYL  +F    +E  I   LT P T Q NGV+ERRN T+LDM+
Sbjct: 656  SDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDML 703


>emb|CBI20118.3| unnamed protein product [Vitis vinifera]
          Length = 1354

 Score =  137 bits (345), Expect(2) = 1e-33
 Identities = 75/176 (42%), Positives = 106/176 (60%), Gaps = 11/176 (6%)
 Frame = -1

Query: 594  LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPFGKGKRASFPLQLIHSDIC 415
            LGHI +ER+ RL ++G+L  L       C +C+ GK T+       R++  L++IH+DIC
Sbjct: 811  LGHISRERIERLVKEGILQNLDFTDFHVCVNCIKGKQTKHTKKGATRSNELLEIIHTDIC 870

Query: 414  GPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALIT 241
            GP+++    G  YFITFIDD +R+G VYL+  KS+A+D F  +   VE QLDK IK + +
Sbjct: 871  GPLSIPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAIDIFEMFITEVERQLDKKIKIVRS 930

Query: 240  DQGCEYLLE---------QFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
            DQG EY             F +  E+  I    T+P T QQNGVAERRN T+++M+
Sbjct: 931  DQGGEYYGRYDESGQNPGPFAKFLEKHGIRAQYTMPGTPQQNGVAERRNRTLMEMV 986



 Score = 33.1 bits (74), Expect(2) = 1e-33
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -2

Query: 95   MMAQSNLPMSCLGDLLSTAAYILNRV 18
            MM+ S++P+S  G+ L TA YILNRV
Sbjct: 989  MMSYSSVPISLWGEALKTAMYILNRV 1014


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score =  149 bits (375), Expect = 1e-33
 Identities = 82/168 (48%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
           LGHI ++RM ++ RDGLL      +  TCE CL GK T+ PF G+ +RAS  L L+H+D+
Sbjct: 420 LGHINEKRMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDV 479

Query: 417 CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
           CGPM+  AR G  YF TF DD +R+G VYL+ HKSE+ + F+++   V+N L K+IK L 
Sbjct: 480 CGPMSSTARGGFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLR 539

Query: 243 TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           +D+G EYL  +F    +E  I   LT P T Q NGV+E RN T+LDM+
Sbjct: 540 SDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMV 587


>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
          Length = 1303

 Score =  142 bits (358), Expect(2) = 2e-33
 Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
           LGHI ++R+ +L +DG+L      +   CE CL GK T+ PF G  +R    L +IH+D+
Sbjct: 419 LGHISKKRIAQLQKDGVLESFDLKSDDVCESCLLGKMTKSPFKGSFERGEGLLDIIHTDV 478

Query: 417 CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
           CGP     + G  +++TF DD +R+G +YLI HKS+  + F+++   VENQL + IK L 
Sbjct: 479 CGPFRSTTKDGTRFYVTFTDDFSRYGYIYLIKHKSDTFEKFKEFKNEVENQLGRKIKMLR 538

Query: 243 TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           +D+G EYL  +F++  +E  I   LT P T Q NGVAERRN T+LDM+
Sbjct: 539 SDRGGEYLSIEFLDYLKECGIVSQLTPPRTPQLNGVAERRNRTLLDMV 586



 Score = 26.9 bits (58), Expect(2) = 2e-33
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRV 18
           MM++++LP+   G  L TAA+ILN V
Sbjct: 589 MMSRASLPIHFWGYALETAAHILNLV 614


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  140 bits (352), Expect(2) = 2e-33
 Identities = 78/160 (48%), Positives = 106/160 (66%), Gaps = 3/160 (1%)
 Frame = -1

Query: 570 MTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDICGPMNVKA 394
           M +L RDGLL      +  TCE CL GK T+ PF G+ +RAS  L+L+H+D+CGPM+  A
Sbjct: 1   MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 393 RHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALITDQGCEYL 220
           R G  YFI F DD +R+G VYL+ HKSE+ + F+++   V+N LDK+IK L +D+G EY 
Sbjct: 61  RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120

Query: 219 LEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
             +F    +E  I   LT P T Q NGV++RRN T+LDM+
Sbjct: 121 SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMV 160



 Score = 29.3 bits (64), Expect(2) = 2e-33
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRV 18
           MM+Q++LP+S  G  L TA + +NRV
Sbjct: 163 MMSQTDLPLSFWGYALETAVFTVNRV 188


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 655

 Score =  140 bits (352), Expect(2) = 2e-33
 Identities = 78/160 (48%), Positives = 106/160 (66%), Gaps = 3/160 (1%)
 Frame = -1

Query: 570 MTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDICGPMNVKA 394
           M +L RDGLL      +  TCE CL GK T+ PF G+ +RAS  L+L+H+D+CGPM+  A
Sbjct: 1   MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 393 RHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALITDQGCEYL 220
           R G  YFI F DD +R+G VYL+ HKSE+ + F+++   V+N LDK+IK L +D+G EY 
Sbjct: 61  RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120

Query: 219 LEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
             +F    +E  I   LT P T Q NGV++RRN T+LDM+
Sbjct: 121 SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMV 160



 Score = 29.3 bits (64), Expect(2) = 2e-33
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRV 18
           MM+Q++LP+S  G  L TA + +NRV
Sbjct: 163 MMSQTDLPLSFWGYALETAVFTVNRV 188


>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
          Length = 873

 Score =  137 bits (346), Expect(2) = 3e-33
 Identities = 80/168 (47%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPF-GKGKRASFPLQLIHSDI 418
           LGHI ++RM +L RDGLL      +  T E CL GK T+ PF G+ +R+S  L L+H D+
Sbjct: 238 LGHINEKRMEKLHRDGLLHSFDFESFETYEFCLLGKMTKAPFTGQSERSSELLGLVHIDV 297

Query: 417 CGPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALI 244
           C PM+  AR G  YFITF DD +R+  VYL+ HKSE+ + F+++   V+N L K+IK L 
Sbjct: 298 CEPMSSTARGGFGYFITFTDDFSRYVYVYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLR 357

Query: 243 TDQGCEYLLEQFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           +D+G EYL  +F    +E  I   LT P T Q N V+ERRN T+LDM+
Sbjct: 358 SDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNRVSERRNRTLLDMV 405



 Score = 31.2 bits (69), Expect(2) = 3e-33
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRVHFTSV 3
           MM+Q++LP+   G  L TAA+ LNRV   SV
Sbjct: 408 MMSQTDLPLCFWGYALETAAFTLNRVPSKSV 438


>emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera]
          Length = 1180

 Score =  133 bits (334), Expect(2) = 2e-32
 Identities = 74/176 (42%), Positives = 104/176 (59%), Gaps = 11/176 (6%)
 Frame = -1

Query: 594 LGHIGQERMTRLARDGLLGPLAKVTLPTCEHCLAGKATRKPFGKGKRASFPLQLIHSDIC 415
           LGHI +E + RL ++G+L  L       C  C+ GK T+       R++  L++IH+DIC
Sbjct: 413 LGHISREXIERLVKEGILQNLDFTDFHVCVDCIKGKQTKHTKKGATRSNELLEIIHTDIC 472

Query: 414 GPMNVKARHGAPYFITFIDDCTRFGKVYLISHKSEALDCFRQY--AVENQLDKSIKALIT 241
           GP++V    G  YFITFIDD +R+G VYL+  KS+A+D F  +   VE QLDK IK + +
Sbjct: 473 GPLSVPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAIDIFEMFITEVERQLDKKIKIVRS 532

Query: 240 DQGCEYLLE---------QFMELCEEKEIHR*LTIPDTLQQNGVAERRNYTMLDMI 100
           D+G EY             F +  E+  I    T+P T QQNGVAERRN T+++M+
Sbjct: 533 DRGGEYYGRYDESGQNPGPFAKFLEKHGIRAQYTMPGTPQQNGVAERRNRTLMEMV 588



 Score = 33.1 bits (74), Expect(2) = 2e-32
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -2

Query: 95  MMAQSNLPMSCLGDLLSTAAYILNRV 18
           MM+ S++P+S  G+ L TA YILNRV
Sbjct: 591 MMSYSSVPISLWGEXLKTAMYILNRV 616