BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00015366
         (518 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases II a...   306   5e-81
ref|XP_012477196.1| PREDICTED: DNA-directed RNA polymerases II a...   301   1e-79
ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citr...   300   2e-79
ref|XP_011014255.1| PREDICTED: DNA-directed RNA polymerases II a...   300   4e-79
ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit famil...   298   1e-78
ref|XP_006381734.1| DNA-directed RNA polymerase family protein [...   297   2e-78
ref|XP_010274103.1| PREDICTED: DNA-directed RNA polymerases II a...   295   9e-78
ref|XP_012080620.1| PREDICTED: DNA-directed RNA polymerases II a...   294   2e-77
emb|CDP10286.1| unnamed protein product [Coffea canephora]            293   3e-77
ref|XP_010107375.1| DNA-directed RNA polymerases I, II, and III ...   291   1e-76
ref|XP_012076737.1| PREDICTED: DNA-directed RNA polymerases II a...   291   1e-76
gb|KJB27153.1| hypothetical protein B456_004G280900 [Gossypium r...   290   2e-76
gb|KDO66461.1| hypothetical protein CISIN_1g030833mg [Citrus sin...   290   4e-76
ref|XP_008451219.1| PREDICTED: DNA-directed RNA polymerases II a...   289   6e-76
ref|XP_012469213.1| PREDICTED: DNA-directed RNA polymerases II a...   288   8e-76
gb|KHG28798.1| dna-directed rna polymerases i, ii, and iii subun...   288   1e-75
ref|XP_010047920.1| PREDICTED: DNA-directed RNA polymerases II a...   288   1e-75
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases II a...   288   1e-75
ref|XP_010535925.1| PREDICTED: DNA-directed RNA polymerases II a...   285   9e-75
ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis ...   285   1e-74

>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Vitis
           vinifera] gi|225445172|ref|XP_002284110.1| PREDICTED:
           DNA-directed RNA polymerases II and IV subunit 5A [Vitis
           vinifera]
          Length = 206

 Score =  306 bits (783), Expect = 5e-81
 Identities = 154/171 (90%), Positives = 162/171 (94%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           MS SEEEI+RLFRIRKTVMQML+DRGYFV DFEI+MTK QFV K+GENMKREDLVI+K K
Sbjct: 1   MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           R D+SDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEIS K
Sbjct: 61  RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQEAELLVNIKEHVLVPEHQ+L  EEKKTLL+RYTVKETQLPRIQV
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQV 171


>ref|XP_012477196.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Gossypium raimondii] gi|823154631|ref|XP_012477197.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A [Gossypium raimondii]
           gi|728836967|gb|KHG16410.1| dna-directed rna polymerases
           i, ii, and iii subunit rpabc1 [Gossypium arboreum]
           gi|763759819|gb|KJB27150.1| hypothetical protein
           B456_004G280900 [Gossypium raimondii]
           gi|763759820|gb|KJB27151.1| hypothetical protein
           B456_004G280900 [Gossypium raimondii]
           gi|763759821|gb|KJB27152.1| hypothetical protein
           B456_004G280900 [Gossypium raimondii]
          Length = 206

 Score =  301 bits (771), Expect = 1e-79
 Identities = 149/171 (87%), Positives = 161/171 (94%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M  S++EI RLFRIRKTVMQML+DRGYFV DFEI+++KQQF+ KYGENMKREDLVI+K K
Sbjct: 1   MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEINLSKQQFISKYGENMKREDLVINKTK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RNDNSDQIYVFFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEIS+K
Sbjct: 61  RNDNSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISSK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQEAELLVN+KEH LVPEHQ+L +EEKKTLL RYTVKETQLPRIQV
Sbjct: 121 FHLEVFQEAELLVNVKEHALVPEHQVLTNEEKKTLLHRYTVKETQLPRIQV 171


>ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citrus clementina]
           gi|567918420|ref|XP_006451216.1| hypothetical protein
           CICLE_v10009504mg [Citrus clementina]
           gi|568843556|ref|XP_006475670.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X1
           [Citrus sinensis] gi|568843558|ref|XP_006475671.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A-like isoform X2 [Citrus sinensis]
           gi|568843560|ref|XP_006475672.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X3
           [Citrus sinensis] gi|557554441|gb|ESR64455.1|
           hypothetical protein CICLE_v10009504mg [Citrus
           clementina] gi|557554442|gb|ESR64456.1| hypothetical
           protein CICLE_v10009504mg [Citrus clementina]
          Length = 206

 Score =  300 bits (769), Expect = 2e-79
 Identities = 150/171 (87%), Positives = 163/171 (95%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M+ S+EEI RLFRIR+TVMQMLRDRGYFV DFEI+M+K+QF+ K+GENMKREDLVI+K  
Sbjct: 1   MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+SDQIYVFFP+EQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EISAK
Sbjct: 61  RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQEAELLVNIKEHVLVPEHQ+L +EEKKTLLKRYTVKETQLPRIQV
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQV 171


>ref|XP_011014255.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Populus euphratica]
          Length = 206

 Score =  300 bits (767), Expect = 4e-79
 Identities = 149/171 (87%), Positives = 161/171 (94%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M+ +EEEI RLFRIRKTVMQML+DRGYFV DFEI MT++QF  KYG NMKREDLVI+K K
Sbjct: 1   MTLTEEEIKRLFRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+SDQIYVFFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEIS K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQEAELLVNIKEHVLVPEHQ+L++EEKKTLL+RYTVKETQLPRIQ+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQI 171


>ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao] gi|508783467|gb|EOY30723.1| Eukaryotic
           rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao]
          Length = 206

 Score =  298 bits (763), Expect = 1e-78
 Identities = 147/171 (85%), Positives = 160/171 (93%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M  S++EI RLFRIRKTVMQML+DRGYFV DFEI MTK QF+ KYGENMKREDLVI+K K
Sbjct: 1   MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEITMTKAQFISKYGENMKREDLVINKTK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RNDNSDQIYVFFP+E KVGVKTMKTYTNRMKSENVFRA+LVVQQNLTPFARTCINEIS+K
Sbjct: 61  RNDNSDQIYVFFPDEAKVGVKTMKTYTNRMKSENVFRAVLVVQQNLTPFARTCINEISSK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQE+ELLVN+KEH LVPEHQ+L +EEKKTLL+RYTVKETQLPRIQV
Sbjct: 121 FHLEVFQESELLVNVKEHSLVPEHQVLTNEEKKTLLQRYTVKETQLPRIQV 171


>ref|XP_006381734.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|550336487|gb|ERP59531.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 206

 Score =  297 bits (761), Expect = 2e-78
 Identities = 148/171 (86%), Positives = 160/171 (93%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M+ +EEEI RL RIRKTVMQML+DRGYFV DFEI MT++QF  KYG NMKREDLVI+K K
Sbjct: 1   MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+SDQIYVFFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEIS K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQEAELLVNIKEHVLVPEHQ+L++EEKKTLL+RYTVKETQLPRIQ+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQI 171


>ref|XP_010274103.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Nelumbo nucifera] gi|720057870|ref|XP_010274104.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A [Nelumbo nucifera]
          Length = 206

 Score =  295 bits (755), Expect = 9e-78
 Identities = 145/171 (84%), Positives = 163/171 (95%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           MS+SE+EITRLFRIR+TV+QML+DRGY V DFE++MT+ QFV KYGEN+KREDLVI+K K
Sbjct: 1   MSSSEDEITRLFRIRRTVIQMLKDRGYLVGDFELNMTRSQFVSKYGENVKREDLVINKAK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+SDQI+VFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLT FA+TCINEI+AK
Sbjct: 61  RNDSSDQIFVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTAFAKTCINEIAAK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQEAELLVNIKEHVLVPEHQ+L  EEKKTLL+RYT+KETQLPRIQ+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQI 171


>ref|XP_012080620.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Jatropha curcas] gi|802658502|ref|XP_012080621.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A-like [Jatropha curcas]
           gi|643720408|gb|KDP30787.1| hypothetical protein
           JCGZ_13730 [Jatropha curcas]
          Length = 206

 Score =  294 bits (752), Expect = 2e-77
 Identities = 143/171 (83%), Positives = 164/171 (95%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M+ SE+EI RLFRIRKTVMQML+DRGY VTD+EI+MT++QF+ KYGENMKREDLVI+K++
Sbjct: 1   MTLSEDEIKRLFRIRKTVMQMLKDRGYLVTDYEINMTREQFISKYGENMKREDLVINKSR 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RN+ SDQIYVFFPEEQKVGVKTMKTYTNRMK+ENV+RA+LVVQQNLTPFARTCI+EI++K
Sbjct: 61  RNEPSDQIYVFFPEEQKVGVKTMKTYTNRMKNENVYRAVLVVQQNLTPFARTCISEIASK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           F LEVFQEAELLVNIKEHVLVPEHQ+L +EEKKTLL+RYTVKETQLPRIQV
Sbjct: 121 FQLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQV 171


>emb|CDP10286.1| unnamed protein product [Coffea canephora]
          Length = 206

 Score =  293 bits (750), Expect = 3e-77
 Identities = 145/171 (84%), Positives = 160/171 (93%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M+ S+EE+TRL RIRKTVM+ML+DR YFVTD EI M K++F+QKYGENMKREDLVI+K+K
Sbjct: 1   MTLSDEEVTRLHRIRKTVMEMLQDRAYFVTDKEIQMEKREFIQKYGENMKREDLVINKSK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+SDQIYVFFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCI+EIS K
Sbjct: 61  RNDSSDQIYVFFPEEPKVGVKTMKTYTNRMKNENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQEAELLVNIK HVLVPEHQLL  EEKKTLL+RYTVKETQLPRIQ+
Sbjct: 121 FHLEVFQEAELLVNIKNHVLVPEHQLLTPEEKKTLLERYTVKETQLPRIQI 171


>ref|XP_010107375.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
           notabilis] gi|587928674|gb|EXC15864.1| DNA-directed RNA
           polymerases I, II, and III subunit RPABC1 [Morus
           notabilis]
          Length = 253

 Score =  291 bits (745), Expect = 1e-76
 Identities = 144/171 (84%), Positives = 159/171 (92%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M  SE+EITRLFRIR+TVMQMLRDR Y V DFE++MTK+QF  KYGENMKREDL+I+K++
Sbjct: 1   MVLSEDEITRLFRIRRTVMQMLRDRNYLVGDFELNMTKEQFRNKYGENMKREDLIINKSR 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+ DQIYVFFPEEQKVGVKTMKTY NRMKSENV RA+LVVQQNLTPFARTCI+EIS K
Sbjct: 61  RNDSPDQIYVFFPEEQKVGVKTMKTYINRMKSENVLRAVLVVQQNLTPFARTCISEISTK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQEAELLVNIKEHVLVPEHQ+L +EEKKTLL+RYTVKETQLPRIQV
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQV 171


>ref|XP_012076737.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Jatropha curcas] gi|643724505|gb|KDP33706.1|
           hypothetical protein JCGZ_07277 [Jatropha curcas]
          Length = 206

 Score =  291 bits (745), Expect = 1e-76
 Identities = 141/171 (82%), Positives = 163/171 (95%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M+ SE+EI +LFRIRKTVMQML+DRGY VTD+EI+MT++QF+ KYGENMKREDLVI+K++
Sbjct: 1   MTLSEDEIKKLFRIRKTVMQMLKDRGYLVTDYEINMTREQFISKYGENMKREDLVINKSR 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RN+ SDQIY+FFPEEQKVGVKTMKTYTNRMK+ENV+RAILVVQQNLTPFARTCI EI++K
Sbjct: 61  RNEPSDQIYIFFPEEQKVGVKTMKTYTNRMKNENVYRAILVVQQNLTPFARTCIAEIASK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           F LEVFQEAELLVNIKEHVLVPEHQ+L +EEKKTLL+RYTVKETQLPR+QV
Sbjct: 121 FQLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRVQV 171


>gb|KJB27153.1| hypothetical protein B456_004G280900 [Gossypium raimondii]
          Length = 201

 Score =  290 bits (743), Expect = 2e-76
 Identities = 143/166 (86%), Positives = 156/166 (93%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M  S++EI RLFRIRKTVMQML+DRGYFV DFEI+++KQQF+ KYGENMKREDLVI+K K
Sbjct: 1   MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEINLSKQQFISKYGENMKREDLVINKTK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RNDNSDQIYVFFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEIS+K
Sbjct: 61  RNDNSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISSK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQL 17
           FHLEVFQEAELLVN+KEH LVPEHQ+L +EEKKTLL RYTVKETQ+
Sbjct: 121 FHLEVFQEAELLVNVKEHALVPEHQVLTNEEKKTLLHRYTVKETQV 166


>gb|KDO66461.1| hypothetical protein CISIN_1g030833mg [Citrus sinensis]
           gi|641847583|gb|KDO66462.1| hypothetical protein
           CISIN_1g030833mg [Citrus sinensis]
          Length = 170

 Score =  290 bits (741), Expect = 4e-76
 Identities = 144/166 (86%), Positives = 158/166 (95%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M+ S+EEI RLFRIR+TVMQMLRDRGYFV DFEI+M+K+QF+ K+GENMKREDLVI+K  
Sbjct: 1   MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+SDQIYVFFP+EQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EISAK
Sbjct: 61  RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQL 17
           FHLEVFQEAELLVNIKEHVLVPEHQ+L +EEKKTLLKRYTVKETQ+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166


>ref|XP_008451219.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Cucumis melo]
          Length = 207

 Score =  289 bits (739), Expect = 6e-76
 Identities = 145/172 (84%), Positives = 160/172 (93%), Gaps = 1/172 (0%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M  SEEEITRLFRIRKTV QMLRDRGYFV DFEIDMT++QF QKYGENMKRED+VI+K+K
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+SDQIYVFFPEE KVG+K +KTYT RMKSENVFRAILVVQQNLTPFAR C++E ++K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 154 -FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
            FHLEVFQEAELLVNIK+HVLVPEHQLL +EEKKTLL+RYTVKETQLPRIQV
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQV 172


>ref|XP_012469213.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Gossypium raimondii] gi|763739700|gb|KJB07199.1|
           hypothetical protein B456_001G007200 [Gossypium
           raimondii]
          Length = 206

 Score =  288 bits (738), Expect = 8e-76
 Identities = 142/171 (83%), Positives = 159/171 (92%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M  S++EI RLFRIRKTV+Q+L+DR YFV DFEI+M+++QF+ K+GENMKREDLVI+K K
Sbjct: 1   MVLSDDEIRRLFRIRKTVLQLLKDRDYFVGDFEINMSREQFISKFGENMKREDLVINKAK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+SDQIYVFFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISSK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQE ELLVN+KEH LVPEHQ+L  EEKKTLL+RYTVKETQLPRIQV
Sbjct: 121 FHLEVFQETELLVNVKEHSLVPEHQVLTTEEKKTLLQRYTVKETQLPRIQV 171


>gb|KHG28798.1| dna-directed rna polymerases i, ii, and iii subunit rpabc1
           [Gossypium arboreum]
          Length = 206

 Score =  288 bits (737), Expect = 1e-75
 Identities = 141/171 (82%), Positives = 159/171 (92%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M  S++EI RLFRIRKTV+Q+L+DR YFV DFEI+M+++QF+ K+GENMKREDL+I+K K
Sbjct: 1   MVLSDDEIRRLFRIRKTVLQLLKDRDYFVGDFEINMSREQFISKFGENMKREDLIINKAK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+SDQIYVFFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISSK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQE ELLVN+KEH LVPEHQ+L  EEKKTLL+RYTVKETQLPRIQV
Sbjct: 121 FHLEVFQETELLVNVKEHSLVPEHQVLTTEEKKTLLQRYTVKETQLPRIQV 171


>ref|XP_010047920.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Eucalyptus grandis] gi|629115273|gb|KCW79948.1|
           hypothetical protein EUGRSUZ_C01278 [Eucalyptus grandis]
          Length = 220

 Score =  288 bits (737), Expect = 1e-75
 Identities = 143/168 (85%), Positives = 159/168 (94%)
 Frame = -2

Query: 505 SEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNKRND 326
           SEEEITRL RI++TV+QMLRDRGY VTD E++MT+ QF++KYGENMKREDLVI+K+KRN+
Sbjct: 18  SEEEITRLHRIQRTVLQMLRDRGYLVTDGELNMTRFQFIEKYGENMKREDLVINKHKRNE 77

Query: 325 NSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAKFHL 146
           +SDQIYVFFPEE KVGVKTMKTYT RM SENVFRAIL VQQNLTPFARTCI+EIS KFHL
Sbjct: 78  SSDQIYVFFPEEAKVGVKTMKTYTTRMNSENVFRAILAVQQNLTPFARTCISEISTKFHL 137

Query: 145 EVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           EVFQEAELLVNIKEHVLVPEHQ+LA+EEKKTLL+RYTVKETQLPRIQV
Sbjct: 138 EVFQEAELLVNIKEHVLVPEHQVLANEEKKTLLQRYTVKETQLPRIQV 185


>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Cucumis sativus] gi|778727309|ref|XP_011659238.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A-like [Cucumis sativus]
           gi|700189484|gb|KGN44717.1| hypothetical protein
           Csa_7G374590 [Cucumis sativus]
          Length = 207

 Score =  288 bits (737), Expect = 1e-75
 Identities = 145/172 (84%), Positives = 160/172 (93%), Gaps = 1/172 (0%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M  SEEEITRLFRIRKTV QMLRDRGYFV DFEIDMT++QF QKYGENMKRED+VI+K+K
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+SDQIYVFFPEE KVG+K +KTYT RMKSENVFRAILVVQQNLTPFAR C++E ++K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 154 -FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
            FHLEVFQEAELLVNIK+HVLVPEHQLL +EEKKTLL+RYTVKETQLPRIQV
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQV 172


>ref|XP_010535925.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A
           [Tarenaya hassleriana]
          Length = 206

 Score =  285 bits (729), Expect = 9e-75
 Identities = 143/171 (83%), Positives = 156/171 (91%)
 Frame = -2

Query: 514 MSTSEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNK 335
           M+ SEEE+ RLFR+RKT+MQML+DR YFVTD EI MTK QF+ KYGENMKREDL + K K
Sbjct: 1   MTLSEEELKRLFRVRKTLMQMLKDRDYFVTDSEIGMTKGQFIMKYGENMKREDLDVQKAK 60

Query: 334 RNDNSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAK 155
           RND+SDQIY+FFPEE KVGVKTMKTYTNRMKSENV RAILVVQQNLTPFART INEIS+K
Sbjct: 61  RNDSSDQIYIFFPEEAKVGVKTMKTYTNRMKSENVSRAILVVQQNLTPFARTVINEISSK 120

Query: 154 FHLEVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           FHLEVFQEAELLVNIKEHVLVP HQ+LA EEK+TLL+RYTVKETQLPRIQV
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPVHQVLASEEKRTLLERYTVKETQLPRIQV 171


>ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis thaliana]
           gi|75275037|sp|O81098.1|RPB5A_ARATH RecName:
           Full=DNA-directed RNA polymerases II and IV subunit 5A;
           Short=RPB5a; AltName: Full=DNA-directed RNA polymerase
           II subunit E; AltName: Full=RNA polymerase I, II and III
           24.3 kDa subunit; Short=AtRPB24.3
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           NRPB5 [Arabidopsis thaliana]
          Length = 205

 Score =  285 bits (728), Expect = 1e-74
 Identities = 138/168 (82%), Positives = 157/168 (93%)
 Frame = -2

Query: 505 SEEEITRLFRIRKTVMQMLRDRGYFVTDFEIDMTKQQFVQKYGENMKREDLVISKNKRND 326
           +EEE+ RL+RI+KT+MQMLRDRGYF+ D E+ MTKQQF++K+G+NMKREDLV  K KRND
Sbjct: 3   TEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRND 62

Query: 325 NSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISAKFHL 146
           NSDQ+Y+FFP+E KVGVKTMK YTNRMKSENVFRAILVVQQNLTPFARTCI+EIS+KFHL
Sbjct: 63  NSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHL 122

Query: 145 EVFQEAELLVNIKEHVLVPEHQLLADEEKKTLLKRYTVKETQLPRIQV 2
           EVFQEAE+LVNIKEHVLVPEHQ+L  EEKKTLL+RYTVKETQLPRIQV
Sbjct: 123 EVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQV 170