BLASTX nr result
ID: Cornus23_contig00011488
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00011488
(677 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AKZ23890.1| RNA polymerase beta subunit (plastid) [Teucrium c... 77 1e-11
gb|AKZ23881.1| RNA polymerase beta subunit (plastid) [Ipomoea le... 76 2e-11
gb|AKZ23880.1| RNA polymerase beta subunit (plastid) [Convolvulu... 76 2e-11
gb|AKZ23878.1| RNA polymerase beta subunit (plastid) [Androsace ... 76 2e-11
gb|AJE71951.1| RNA polymerase beta ' subunit (plastid) [Baptisia... 76 2e-11
gb|AKM97909.1| rpoC1 (chloroplast) [Brassica oleracea var. capit... 76 2e-11
ref|YP_009128382.1| RNA polymerase beta (chloroplast) [Ipomoea b... 76 2e-11
ref|YP_008963596.1| RNA polymerase beta' subunit (chloroplast) [... 76 2e-11
gb|AGW98961.1| RNA polymerase beta (chloroplast) [Turbina corymb... 76 2e-11
gb|AGW98876.1| RNA polymerase beta (chloroplast) [Stictocardia m... 76 2e-11
gb|AGW98791.1| RNA polymerase beta (chloroplast) [Operculina mac... 76 2e-11
gb|AGW98706.1| RNA polymerase beta (chloroplast) [Merremia quinq... 76 2e-11
gb|AGW98621.1| RNA polymerase beta (chloroplast) [Ipomoea pes-ti... 76 2e-11
gb|AGW98536.1| RNA polymerase beta (chloroplast) [Ipomoea obscura] 76 2e-11
gb|AGW98111.1| RNA polymerase beta (chloroplast) [Ipomoea ternif... 76 2e-11
gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedice... 76 2e-11
gb|AGW97432.1| RNA polymerase beta (chloroplast) [Ipomoea muruco... 76 2e-11
gb|AGW97262.1| RNA polymerase beta (chloroplast) [Ipomoea hederi... 76 2e-11
gb|AGW97007.1| RNA polymerase beta (chloroplast) [Ipomoea diaman... 76 2e-11
gb|AGW96922.1| RNA polymerase beta (chloroplast) [Ipomoea cairica] 76 2e-11
>gb|AKZ23890.1| RNA polymerase beta subunit (plastid) [Teucrium canadense]
Length = 691
Score = 76.6 bits (187), Expect = 1e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSD+IKGKEGR
Sbjct: 335 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIKGKEGR 377
>gb|AKZ23881.1| RNA polymerase beta subunit (plastid) [Ipomoea leptophylla]
Length = 687
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 373
>gb|AKZ23880.1| RNA polymerase beta subunit (plastid) [Convolvulus arvensis]
Length = 687
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 373
>gb|AKZ23878.1| RNA polymerase beta subunit (plastid) [Androsace occidentalis]
Length = 685
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 327 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 369
>gb|AJE71951.1| RNA polymerase beta ' subunit (plastid) [Baptisia bracteata]
gi|748991948|gb|AJE72377.1| RNA polymerase beta '
subunit (plastid) [Baptisia alba]
Length = 684
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 326 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 368
>gb|AKM97909.1| rpoC1 (chloroplast) [Brassica oleracea var. capitata]
Length = 681
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 325 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 367
>ref|YP_009128382.1| RNA polymerase beta (chloroplast) [Ipomoea batatas]
gi|760173521|gb|AJP09554.1| RNA polymerase beta
(chloroplast) [Ipomoea batatas]
Length = 691
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 335 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 377
>ref|YP_008963596.1| RNA polymerase beta' subunit (chloroplast) [Lupinus luteus]
gi|485474307|gb|AGK82909.1| RNA polymerase beta' subunit
(chloroplast) [Lupinus luteus]
Length = 681
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 326 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 368
>gb|AGW98961.1| RNA polymerase beta (chloroplast) [Turbina corymbosa]
Length = 687
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 373
>gb|AGW98876.1| RNA polymerase beta (chloroplast) [Stictocardia macalusoi]
Length = 687
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 373
>gb|AGW98791.1| RNA polymerase beta (chloroplast) [Operculina macrocarpa]
Length = 687
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 373
>gb|AGW98706.1| RNA polymerase beta (chloroplast) [Merremia quinquefolia]
Length = 687
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 373
>gb|AGW98621.1| RNA polymerase beta (chloroplast) [Ipomoea pes-tigridis]
Length = 687
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 373
>gb|AGW98536.1| RNA polymerase beta (chloroplast) [Ipomoea obscura]
Length = 680
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 366
>gb|AGW98111.1| RNA polymerase beta (chloroplast) [Ipomoea ternifolia]
Length = 687
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 373
>gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedicellaris]
Length = 718
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 362 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 404
>gb|AGW97432.1| RNA polymerase beta (chloroplast) [Ipomoea murucoides]
Length = 682
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 326 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 368
>gb|AGW97262.1| RNA polymerase beta (chloroplast) [Ipomoea hederifolia]
Length = 687
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 373
>gb|AGW97007.1| RNA polymerase beta (chloroplast) [Ipomoea diamantinensis]
Length = 687
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 373
>gb|AGW96922.1| RNA polymerase beta (chloroplast) [Ipomoea cairica]
Length = 687
Score = 76.3 bits (186), Expect = 2e-11
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +1
Query: 229 REKLIQEAVDTLLDNGIRRQPMRDCHNEVYKLFSDLIKGKEGR 357
+EKL+QEAVDTLLDNGIR QPMRD HN+VYK FSDLI+GKEGR
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGR 373