BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00000636
         (6220 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ALM62223.1| RNA-dependent RNA polymerase [Soybean-associated ...   121   1e-23
ref|YP_004659200.1| replication-associated polyprotein [Blackber...   113   2e-21
gb|AHL25284.1| RNA-dependent RNA polymerase, partial [Rhizoctoni...   105   7e-19
ref|NP_112029.1| RNA-dependant RNA polymerase [Banana mild mosai...    99   7e-17
ref|NP_542612.1| replicase [Grapevine fleck virus] gi|81956065|s...    98   1e-16
ref|NP_068549.1| replicase [Botrytis virus F] gi|81968259|sp|Q9D...    95   1e-15
gb|AFV73358.1| 195 kDa replicase [Grapevine virus A]                   92   8e-15
gb|AHJ80324.1| replicase [Cherry rusty mottle associated virus]        91   1e-14
gb|ABH07008.1| putative replicase [Grapevine virus A]                  91   2e-14
gb|ABG37965.1| putative replicase [Grapevine virus A]                  91   2e-14
gb|ABH06983.2| 194 kDa protein [Grapevine virus A]                     89   5e-14
ref|YP_002308565.1| putative polyprotein [Peach mosaic virus] gi...    89   5e-14
gb|AFU54613.1| RNA-dependent RNA polymerase [Cherry green ring m...    89   7e-14
ref|YP_004464930.1| unnamed protein product [Bombyx mori Macula-...    89   7e-14
gb|ABH06992.2| 194 kDa protein [Grapevine virus A]                     89   7e-14
gb|ABH06988.2| 194 kDa protein [Grapevine virus A]                     88   1e-13
ref|NP_041257.1| replicase [Ononis yellow mosaic virus] gi|13055...    86   3e-13
gb|AAX07259.1| replicase, partial [Mint virus 2]                       86   6e-13
gb|ACA52189.1| 194 kDa protein [Grapevine virus A]                     86   6e-13
emb|CAC18739.1| putative RNA polymerase RNA dependant [Cherry gr...    85   8e-13

>gb|ALM62223.1| RNA-dependent RNA polymerase [Soybean-associated mycoflexivirus 1]
          Length = 2084

 Score =  121 bits (303), Expect = 1e-23
 Identities = 98/340 (28%), Positives = 152/340 (44%), Gaps = 11/340 (3%)
 Frame = -2

Query: 1128 HKRKDTSTYFLSVQKRLKTMS-----AKANARRMARCKR-LDMCDEFDKLVPHPPKWSAM 967
            H R D  T  +  +KR++        +  +ARR+   K+      + D  +  P  +  M
Sbjct: 1678 HTRADKVTDIMGQRKRIRIGKHDLPWSSKDARRLKSLKKGFSKFFDMDSWLAEPENFPLM 1737

Query: 966  KHAEYCDLTITEYESHRTKEAVYAKLDAHDPDRTGSDIKISLKNQVIKKDEKRHKKEAIP 787
            +  E   L    + S RTK+ + A +   D D   +  +I  K Q IKK  K  +  A  
Sbjct: 1738 EQCEAEKLA--SWASKRTKKTLVASIAKQDLDMHYTFTRIFPKGQYIKKKAK-WRCNAFA 1794

Query: 786  GQLIHEYDIGQTLSDAPYALFLEN-ELFDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGV 610
             Q + ++ +G+   DAP ALFLE   L  A+ S +L + R +P      Y+  W    GV
Sbjct: 1795 SQTVSDFHLGRIFRDAPRALFLEKMALKHAYDSTYL-HCRASPDDLSAWYRNHW--SPGV 1851

Query: 609  HT-SDVTRWDVGCDAGVLNFDVHVMHKCGFPAEYIKDYIVRRLSSRSQHGPMATMQNSGD 433
             T +D T WD G D   L FD+ +M  C FP EY++ +   RL++ S  G     Q SGD
Sbjct: 1852 MTGNDYTAWDSGIDHVFLEFDLWLMEVCHFPVEYLERFRYERLNTHSFLGNHMPRQESGD 1911

Query: 432  RYTWSLNSIRRAVVASIINEVTPADTVAINGDDE-AIDRFCDSKFFPDSPWTF--KNLNG 262
            R+TW LN++R A +     +      V I+GDD   +  +  +  F    W    K   G
Sbjct: 1912 RWTWILNTLRNAALTGASLDCPRKTPVCISGDDSVTLGSWRKTTGFNPGEWLMVPKREEG 1971

Query: 261  DVGDFSGFELGGVEPKYSAEGINYRSLILESRDPSAQDKW 142
               +F G   GG +  +    +++RS     +  +  D W
Sbjct: 1972 VTMEFCGLIFGGSDVSFDPAVVHWRSRFGLQQGRADADYW 2011



 Score =  102 bits (253), Expect = 6e-18
 Identities = 103/381 (27%), Positives = 154/381 (40%), Gaps = 27/381 (7%)
 Frame = -2

Query: 2466 DMALPAVPLNAQRFEYTA---DVQRAARLVADLRAHPGVLE--SFNNPQIIQSLDAIV-- 2308
            +  LPAVP+  +   Y     D   A  L +D +A P  L+   FN     ++LD +   
Sbjct: 1145 NFVLPAVPVQQEVIVYVPNARDAGYARALASDFKAKPAALDLTDFNPVDAARTLDQMAKQ 1204

Query: 2307 -DTWRASGKPCTKPIVAYF---GVWGSGKTTATMGYMAGLSEERR-RQTRVVSHTESLRA 2143
             D +  +G     P V +    GV G GKT   +  +A  +  +      ++ HT     
Sbjct: 1205 YDNFVRNGTGLAYPNVTFHIFHGVGGGGKTHRMIQDLAIANAAKPFTPADIMFHTADHNL 1264

Query: 2142 QSKL------ALDFPSLRGFNFPTLASIITEPSTGPVVFDDAGKFWGGMLDLVMLCNPLI 1981
            +SK       AL    L+  +F T    +  P+ G VVFDD G  +   L L M CNP +
Sbjct: 1265 RSKFMAEVIAALPNVGLQNNHFTTSCVPLVRPAAGTVVFDDVGLTFNSFLPLFMACNPGV 1324

Query: 1980 DEIVLNGDPAQGLSQFPVAGTQSQFDANPLSAVAHLITEYATVTHRGFRLLADTLGVHTT 1801
             +I L  D AQG    P A   S+        ++ + + Y T   R  +  AD  G    
Sbjct: 1325 TDIWLTFDCAQGQGVIPTANAISRSHPATKDWLSPMSSRYGTEMIRLSQDTADLYGFPRV 1384

Query: 1800 NI-----NEGHITHTVAPKIGLPVLTSSPRYAGVLISSGRQAYTFASVQGEDFKTDVEVD 1636
             I       G +T        +P+L  SPR+       G+ A TF   QG     DV VD
Sbjct: 1385 VIPGRIAPRGKVTVVSQSPHNVPLLAVSPRFTQTQSMGGQVANTFQECQGHTIHGDVCVD 1444

Query: 1635 MTALEDAVLDRSAYVGLTRSKTGCYVHMS-AMDASSNIRAPPTASDLMNGL--IYAVRQQ 1465
            +  L     D SA+  LTR     ++ +   M+  + +      S ++  L  +  +RQ 
Sbjct: 1445 LGGLTATCTDTSAWTALTRPTGHTFLKLGPLMNTQAVVETSWAKSQILTALLTVATIRQT 1504

Query: 1464 GGSALQRP-DAIVKAAFYRHL 1405
                 Q   D +V+ A Y HL
Sbjct: 1505 PYVTAQMDVDGLVRTAVYSHL 1525



 Score = 79.0 bits (193), Expect = 6e-11
 Identities = 71/331 (21%), Positives = 129/331 (38%), Gaps = 13/331 (3%)
 Frame = -2

Query: 5505 ADTFGRDFFRGSPQEHAVLNRHLLDYFKGRDRAQRTTPYNIPNSQRHILAPLGMEEPQPD 5326
            A +   +F+  SP +  +L+ H+  Y KG   A++  PY++P   R +L   G+ +P P 
Sbjct: 170  AGSLDPNFYADSPLKSVILSMHMGAYGKGLASARQQCPYDVPTKLRPLLREAGISDPPPH 229

Query: 5325 APEAQHALHKCIEEHQLSRMAQYLPANSYGLISVKDSKLHI----LPTPASVQNPVHQAK 5158
            A    H +H  +    ++  A+ L    Y L +  D   ++       P+ V +P ++ K
Sbjct: 230  AEPHSHPVHYALRNKYMAMAAKSLQGQWYALFAGADRINYLRSCGASAPSGVFSPRYEGK 289

Query: 5157 DVSRYPGSGL-------RCAKFSEHDLYFMHDVSSEVGPHEIVERIASENSNAHVFVTGI 4999
            D++RY G  +       +    S   ++++ D    +    +        +  +V  T I
Sbjct: 290  DITRYKGQPVPTEGGLPQLEPSSLSPVWYVCDTLHHLSASVVGSWFDKNPTLEYVVATTI 349

Query: 4998 NPIEVVDRASSFEPASHEIDYDLSGFNYVFTGSESEAYFTPVATTVSWLRTSSIRASTGD 4819
             P E +    S   A +          Y+  G    AY  PV+    WLRT ++      
Sbjct: 350  IPPETLWGLPSLTRALYSYTIKGDTLTYIPEGHVGSAYVQPVSGN-RWLRTDALITPRNS 408

Query: 4818 VYQVVLLDYKLGHCIWHVFRGDVPAQESRTFPTGSYIRIPAVL--TGTWSDEWIPAKMVT 4645
               V LL     H +  + R  +  Q+SR     +   +P  +   GT         +  
Sbjct: 409  CVHVSLLSQDFAHQLIVISRAPLLPQKSRLMGLRNVSVVPWFIHPMGTLYQRLTSPGLNR 468

Query: 4644 NILAFTDRTPDLSSRNIAAKVSQLATSITPR 4552
             +  +  R    S R+I +K +    +I  R
Sbjct: 469  ALQTYITRVGSTSIRDIYSKSTATEVAIFER 499


>ref|YP_004659200.1| replication-associated polyprotein [Blackberry virus E]
            gi|336139487|gb|AEI17897.1| replication-associated
            polyprotein [Blackberry virus E]
          Length = 1499

 Score =  113 bits (283), Expect = 2e-21
 Identities = 161/732 (21%), Positives = 268/732 (36%), Gaps = 16/732 (2%)
 Frame = -2

Query: 2451 AVPLNAQRFEYTADVQRAARLVADLRAHPGVLESFNNPQIIQSLDA-IVDTWRASGKPCT 2275
            A  L  + + Y  D +RA   ++D++ +   L       ++  LD  I+  W  S   C+
Sbjct: 676  AQKLQRRFYSYVLDNKRATAYMSDVKNNLTGL-------VLPKLDRNILSAW-VSLAECS 727

Query: 2274 KPIVAYFGVWGSGKTTATMGYMAGLSEERRRQTRVVSHTESLRAQSKLALDF----PSLR 2107
            K  V+   + G+G      G    + E  R    V  +T  +     L LD+    P + 
Sbjct: 728  KRTVSVLVIHGAGGA----GKSRAIQEMLRNHGEVADNTNVVVPTVNLVLDWKSKLPEVD 783

Query: 2106 GFNFPTLASIITEPSTGPVVFDDAGKFWGGMLDLVMLCNPLIDEIVLNGDPAQGLSQFPV 1927
              +F T            V+FDD GK   G +D  +   P ++ ++L GD  Q +     
Sbjct: 784  PKHFMTFEKACEREGKEVVIFDDYGKLPAGYIDAYLSIKPTVETVILTGDQRQSVHH--- 840

Query: 1926 AGTQSQFDANPLSAVAHL---ITEYATVTHRGFRLLADTLGVHTTNINEGHITHTVAPKI 1756
            A  +    AN  + V H       Y   THR  + LA+ + VH      G +        
Sbjct: 841  ATNREAQTANLKTNVQHFSRYCDYYVNATHRQPQRLANPIQVHAERKTGGAVHRANLIPD 900

Query: 1755 GLPVLTSSPRYAGVLISSGRQAYTFASVQGEDFK--TDVEVDMTALEDAVLDRSAYVGLT 1582
               VL  S      L   GR+A  ++  QG      T V  + T L    +  +A+    
Sbjct: 901  TATVLVPSFTTQQSLNGLGRRALAYSGCQGLTLPHVTIVLDNDTPLCSNEVLYTAFSRAP 960

Query: 1581 RSKTGCYVHMSAMDASSNIRAPPTASDLMNGLIYAVRQQGGSALQRPDAIVKAAFYRHLH 1402
             S T    H    D  + + + P    L++G+    +      L +P+ + +     HL 
Sbjct: 961  ESITFVNTHSDHPDFLAKLDSTPYLKTLLSGVREDEQAGKDDPLPKPE-VREPMIKTHL- 1018

Query: 1401 TAMPALPWFAMFGSSIPRQDFQNVFPATETHRVVESNVGDHIVSDATEAVAPAIDGFVPE 1222
                                     P       +E  V      D  E            
Sbjct: 1019 -------------------------PVANLETYLEDKVEQMEDKDTREL----------- 1042

Query: 1221 THWHAKEDREVPGRGGATDQFKETAFVNPHDHKRKDTSTYFLSVQKRLKTMSAKANARRM 1042
              W  KE   +        Q      + PH  + KD + + L++++R++T +   N++ +
Sbjct: 1043 --WDGKEKTNLMQTQDPVVQ------LFPHQ-QAKDEALFKLTIEQRIRTATPAENSKSV 1093

Query: 1041 ARCKR-----LDMCDEFDKLVPHPPKWSAMKHAEYC-DLTITEYESHRTKEAVYAKLDAH 880
                +      +   +F + VP  P+       E+C  L +  Y S         K    
Sbjct: 1094 QHTLQAGDLLFEAYSDFMR-VPKEPQTFNPDLWEHCKQLALRTYVSKPRNNLEQGKT-RQ 1151

Query: 879  DPDRTGSDIKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLENELFDA 700
            DPD   + I +  K+Q +KK EK   K    GQ I  +     L     AL+L  +  + 
Sbjct: 1152 DPDFPENAIALFNKSQWVKKLEKVGFKFKA-GQTISAFKQSTVLLTTTMALYLRKKRLEH 1210

Query: 699  FPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMHKCGFP 520
             P N        P +F D    RW      +TSD T++D   DA  LNF++      G P
Sbjct: 1211 QPQNVFIMCEKTPAEFNDFVLNRWDFKTPSYTSDYTQYDQSQDAAFLNFELRKARHLGVP 1270

Query: 519  AEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADTVAING 340
             E +  Y   ++ +++  G +A M+ SG+  T+  N+       ++  ++ P       G
Sbjct: 1271 EEVLDFYKFIKIHAKTFVGNLAIMRLSGEGPTFDANTECNIAYDALRFKLAPTVNACYAG 1330

Query: 339  DDEAIDRFCDSK 304
            DD   D+ CD +
Sbjct: 1331 DDLVRDQVCDER 1342



 Score = 67.4 bits (163), Expect = 2e-07
 Identities = 69/302 (22%), Positives = 117/302 (38%), Gaps = 22/302 (7%)
 Frame = -2

Query: 5412 RAQRTTPYNIPNSQRHILAPLGMEEPQPDAPEAQHALHKCIEEHQLSRMAQYLPANSYGL 5233
            +A    P+ + +++   L  LG+           HA  K +E   L+ +  YLP +    
Sbjct: 35   KAATLAPFAVSDAEAVTLERLGITTSPFATTSHTHAADKILENDCLALIGHYLPKDPVTF 94

Query: 5232 ISVKDSKLHIL---PTPASVQNPVHQAKDVSRYPGSGLRCAKFSEHDLYFMHDVSSEVGP 5062
            I +K SKLH+L   P   ++ N  H+ KDV RY  +        +     + D    +  
Sbjct: 95   IQLKKSKLHLLHRGPDQDTLTNYCHEPKDVLRYGITNPHSCPKIQTQYAVLADTLHFMST 154

Query: 5061 HEIVERIASENSNAHVFVTGINPIEVVDRASSFEPASHEIDYDLSGFNYVFTGSESEAYF 4882
             ++        +   +F T + PIE + R  S  P  + ++Y  + F Y+  G    AY 
Sbjct: 155  MQLAVLFNKNPTLDRLFATLVLPIEALHRLPSLFPEVYRLEYYENHFAYMPGGHGGGAYV 214

Query: 4881 TPVATTVSWLRTSSIRASTGDVYQVVLLDY--------KLGHCIWHVFRGDV----PAQE 4738
               A T+ WL T  +      +    + DY        K  H +  + R       P   
Sbjct: 215  HSYA-TLKWLSTGQVGTHGPGLISFGITDYLSIEKIETKAAHHVMLIQRRRARVPWPLPP 273

Query: 4737 SRTFPTGSYIRIP-------AVLTGTWSDEWIPAKMVTNILAFTDRTPDLSSRNIAAKVS 4579
               F    Y+R+P       A +  T+ D +     V  + A+      +S R+I AK+ 
Sbjct: 274  VWVFQASDYVRLPHIFYPPEANVRNTYQDVF-----VKRLQAYCFSVKAVSLRDIFAKIR 328

Query: 4578 QL 4573
            Q+
Sbjct: 329  QV 330


>gb|AHL25284.1| RNA-dependent RNA polymerase, partial [Rhizoctonia virus RS002]
          Length = 285

 Score =  105 bits (261), Expect = 7e-19
 Identities = 78/268 (29%), Positives = 112/268 (41%), Gaps = 8/268 (2%)
 Frame = -2

Query: 957 EYC-DLTITEYESHRTKEAVYAKLDAHDPDRTGSDIKISLKNQVIKKDEKRHKKEAIPGQ 781
           E+C +  +  + S RT   + A +    PD     +K+ LK+Q +KK  K H   A  GQ
Sbjct: 23  EHCFERRLQSWVSSRTVAQLTASVKRAGPDWDPLFVKLFLKSQRVKKIGKAHAA-ATKGQ 81

Query: 780 LIHEYDIGQTLSDAPYALFLENELFDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTS 601
           ++ +    +   D  +AL+LE  L      N   + R N       Y K W  G G    
Sbjct: 82  IVTDVSQAKLFRDQVWALYLEEVLLRRTRKNIYLHTRANFSDMQRWYTKYWVTGAGCTAC 141

Query: 600 DVTRWDVGCDAGVLNFDVHVMHKCGFPAEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTW 421
           D T WD G D        +VM   G P   +  +   R + RS  GPM  MQ SGDRYTW
Sbjct: 142 DYTGWDSGVDESFTLLYSNVMRAFGIPDSVVDRFCSDRNNLRSFLGPMPAMQASGDRYTW 201

Query: 420 SLNSIRRAVVASIINEVTPADTVAINGDDEAIDRFCD-------SKFFPDSPWTFKNLNG 262
             N+I    V  +  +V P      +GDD  +  + D       S+F P      K +  
Sbjct: 202 LANTIGNMAVTGVSFDVGPKTAACFSGDDMIMCGYYDYRSSAASSQFIP------KVIQA 255

Query: 261 DVGDFSGFELGGVEPKYSAEGINYRSLI 178
            + +F GF  G      SA  + +R  +
Sbjct: 256 QLTEFCGFMYGSTRLHVSATVLLHRGTL 283


>ref|NP_112029.1| RNA-dependant RNA polymerase [Banana mild mosaic virus]
            gi|13507175|gb|AAK28489.1|AF314662_1 RNA-dependant RNA
            polymerase [Banana mild mosaic virus]
          Length = 1771

 Score = 98.6 bits (244), Expect = 7e-17
 Identities = 155/688 (22%), Positives = 277/688 (40%), Gaps = 46/688 (6%)
 Frame = -2

Query: 2259 YFGVWGSGKTTATMGYMAGLSEERRRQTRVVSHTESLRAQSKLALDFP---SLRGFNFPT 2089
            + G++GSGK+   + +       +     V+S  + L +  +  +D     S++   F T
Sbjct: 973  HVGIFGSGKSRNFVNFCKA---NQGYAILVISPRKELASDLQKKMDLSRKTSIKICTFET 1029

Query: 2088 LASIITEPSTGP-VVFDDAGKFWGGMLDLVMLCNPLIDEIVLNGDPAQGLSQFPVAGTQS 1912
              S +  P +G  V+ D+      G LD ++  +    + +  GDP Q  + +     + 
Sbjct: 1030 AMSFM--PWSGNLVIIDELQLCPPGYLDFLLAISNKETKFIATGDPCQ--ASYDNETDRM 1085

Query: 1911 QFDANPLSAVAHLITE---YATVTHR----GFRLLADTLGVHTTNINEGHITHTVAPKIG 1753
             FD  P     H++ E   Y   +HR     FR         T +++E  +  T   ++ 
Sbjct: 1086 IFDEVPTDFEYHMMGEEYSYNATSHRFINTNFRSRMPANLRFTESVSEPWLVETDINEVR 1145

Query: 1752 LP----VLTSSPRYAGVL--ISSGRQAYTFASVQGEDFKTDVEVDMTALEDAVLDRSAYV 1591
            +     VL SS         +  G++  TF    G  F   V V ++    +  ++   V
Sbjct: 1146 MSEADVVLVSSFGELNYYKKMFKGKRVITFGQSTGLTFDY-VAVVVSRTSFSTDEKRWLV 1204

Query: 1590 GLTRS-KTGCYVHMSAMDASSNIRAPPTASDLMNGLIYAVRQQGGSALQRPDAIVKAAFY 1414
             LTRS KT  +     +   + +   P   D +  L    R    +  ++     KA   
Sbjct: 1205 ALTRSRKTILFFFEETLSPETVLEIDP---DHLLSLFLTERASVDTLFEKNFLNSKAKIV 1261

Query: 1413 RHLHTAMPAL---------PWFAMFGSSIPRQDFQNVFPATETHRVVESNVGD-HIVSDA 1264
                     +         PW       + ++ F +     E    ++ N G  H+  + 
Sbjct: 1262 NGFKIGADEVDREERLQGDPWLKSM-IDLAQRTFVSEEEMVEAG--IKENFGKVHVPIEE 1318

Query: 1263 TEAV-APAIDGFVPETHWHAK---------EDREVP-GRGGATDQFKETAFVNPHDHKRK 1117
             E   +  +D F P+     +          DRE P  +   T+Q ++   + P  H+  
Sbjct: 1319 REVYRSKIVDLFTPKERREMRIRNMQSQQFSDREEPRNKNLITNQAQKFESIYPR-HRNS 1377

Query: 1116 DTSTYFLSVQKRLKTMSAKANARRMARCKRL--DMCDEFDKLVPHPPKWSAMKHAEYCDL 943
            DT T+ ++V+KRL     +   +R    KR   +M D F+K VP    +S  K  E    
Sbjct: 1378 DTVTFLMAVKKRLSFSQPRKEMQRYLMNKRKGEEMADAFEKFVPIKSNFSREKFIE---- 1433

Query: 942  TITEYESHRTKEAVYAKLDAHDPDRTGSDIKIS-----LKNQVIKKDEKRHKKEAIPGQL 778
               E+ES + +++  A ++ H   R+  + KI      +K+Q+  K EKR   EA  GQ 
Sbjct: 1434 AKMEFESKKLEKSK-ATIENH-AQRSNREWKIDEAMIFMKSQLCTKFEKRFV-EAKAGQT 1490

Query: 777  IHEYDIGQTLSDAPYALFLENELFDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSD 598
            +  +        APY  ++E  + +  P NF  +   N     D  KK    G  +  SD
Sbjct: 1491 LACFSHIVLCRFAPYVRYMEKIVNENLPKNFYIHNGKNFDDLNDYVKKNNFSGRCIE-SD 1549

Query: 597  VTRWDVGCDAGVLNFDVHVMHKCGFPAEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTWS 418
               +D   D+ +L F+V +M +   P E+I DY+  + + RS+ G MA M+ +G+  T+ 
Sbjct: 1550 YEAFDASQDSQILAFEVAIMRRMNMPQEFIDDYVWLKCNLRSKLGNMAIMRFTGEAATFL 1609

Query: 417  LNSIRRAVVASIINEVTPADTVAINGDD 334
             N++   V   +  ++   + +   GDD
Sbjct: 1610 FNTMANIVFTIMAYDLKGDECILFAGDD 1637


>ref|NP_542612.1| replicase [Grapevine fleck virus] gi|81956065|sp|Q8UZB6.1|RDRP_GFKVM
            RecName: Full=RNA replication protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase; Includes: RecName: Full=Methyltransferase
            gi|18073602|emb|CAC84400.1| replicase [Grapevine fleck
            virus]
          Length = 1949

 Score = 97.8 bits (242), Expect = 1e-16
 Identities = 183/827 (22%), Positives = 301/827 (36%), Gaps = 126/827 (15%)
 Frame = -2

Query: 2421 YTADVQRAARLVADLR-AHPGVLESF------NNPQIIQSLDAIVDTWRASGKPCTKPIV 2263
            Y+  + RA  LV++L+    G++ S       N   +IQ+LD   D       P  +P V
Sbjct: 988  YSIALPRAKNLVSNLKNGFDGLVSSLPASDRTNLLPLIQALDHTADF------PPARPPV 1041

Query: 2262 AYFGVWGSGKTTATMGYMAGLSEERRRQTRVVSHTESLRAQSKLALDFPSLRGFNFPTLA 2083
                + G      +      L+ +  R  RVV+ T  LR + K AL       +   T  
Sbjct: 1042 GLIHIAGFAGCGKSYPIQQLLATQTFRHFRVVTPTTELRHEWKRALKLEGPSSWRVSTWE 1101

Query: 2082 SIITEPSTGPVVFDDAGKFWGGMLDLVMLCNPLIDEIVLNGDPAQGLSQFPVAGTQSQFD 1903
            + + + ++  +V D+  K   G LDL +L +P ++ +++ GDP QG          S   
Sbjct: 1102 TALAKRAS-VLVIDEVYKLPRGYLDLALLADPTVEFVIILGDPLQG----------SYNP 1150

Query: 1902 ANPLSAVAHLITE----------YATVTHRGFRLLADTLGVHTTNINEGHITHTVAPKIG 1753
             NP S+   LI E          Y   T R  RL+AD  GV TTN   GH+         
Sbjct: 1151 TNPDSSNHRLIPEEDHLRPFIDFYCLWTRRLPRLVADFFGVPTTNPTRGHLAFASLNTTQ 1210

Query: 1752 LPVLTSSPRYAGVLISSGRQAYTFASVQGEDFKTDVEVDMTALEDAVLDRSAYVGLTRSK 1573
             P+L  S   A  L + G +A T+A+ QG  +   V + +    + V +  A V LTRS+
Sbjct: 1211 SPLLVPSDSMARALTAGGHRAITYAASQGSTYPAPVHIFLDRNSNLVTNHVALVALTRSR 1270

Query: 1572 TGCYVHMSAMD----------------------ASSNIRAPPTASDLMNGLIYAVRQQGG 1459
            +G +    A D                       +   +  PT  D+   L++  + +G 
Sbjct: 1271 SGVHFRPRAQDLPRHPQHLFTAFYKYAIDLLAHEADPSKPRPTPVDVT--LLFQQQLRGL 1328

Query: 1458 SALQRPD-----------AIVKAAFYRHLHTAMPA-----LPWFAMF-GSSIPRQDFQNV 1330
            + L+ P             +  A  + +LH   P      LP    +   S+P    ++ 
Sbjct: 1329 TILRDPSFSRITGGATHAFLAHAPLFTNLHGLRPTTFPDNLPTAPTYLARSLPYHQTESY 1388

Query: 1329 FPATETHRVVESNVGDHIVSDATEAVAPAIDGFVPET----------------------H 1216
              +   HRV  ++  D   +D    V P    FV ET                      H
Sbjct: 1389 PTSALPHRVFPASTTDWSAADDHPRVNPT---FVAETRLPLQSELAPTLPSQPEPSPTYH 1445

Query: 1215 WHAKEDREVPGRGG---------ATDQFKETAF-------------------------VN 1138
              A  +   PG  G         ATD  +   F                         V 
Sbjct: 1446 SPATFETVYPGVDGEALARTFLAATDPLELEIFFRNNWSNQFPFINRPDTVACNPLTLVA 1505

Query: 1137 PHDHKRKDTSTYFLSVQKRLK--------TMSAKANARRMARCKRLDMC-DEFDKLVPHP 985
            P  ++++D +    S+ KRL+        T++AK  A        L        + VP  
Sbjct: 1506 PTHNQKQDPTLLHASLAKRLRFRDSTAPYTITAKDQALGYILYHSLQRAYCRSPEPVPFD 1565

Query: 984  PKWSAMKHAEYCDLTITEYESHRTKEAVYAKLDAHDPDRTGSDIKISLKNQ--VIKKDEK 811
            P   A   AE     +T     +T+  + A     DPD   + ++I  K Q  V +    
Sbjct: 1566 PVLFASCIAENDFAQLTS----KTQATIQANAFRSDPDWRHTFVRIFSKTQHKVNENSLF 1621

Query: 810  RHKKEAIPGQLIHEYDIGQTLSDAPYALFLENELFDAFPSNFLFYRRMNPQQFVDAYKKR 631
               K      L+H+Y I        Y   L++      P++   +    P Q  +  +  
Sbjct: 1622 TSWKACQTLALMHDYLILVLGPVKKYQRILDSR---DRPAHLYIHAGQTPHQLSEWCQN- 1677

Query: 630  WRVGNGVH-TSDVTRWDVGCDAGVLNFDVHVMHKCGFPAEYIKDYIVRRLSSRSQHGPMA 454
              +   VH  +D T +D       +  +   M +   P  +I  ++  + +   Q GP+ 
Sbjct: 1678 -HLTPSVHLANDYTAFDQSQHGEAVVLEAWKMRRASIPEPFITLHVHVKTNIECQFGPLT 1736

Query: 453  TMQNSGDRYTWSLNSIRRAVV--ASIINEVTPADTVAINGDDEAIDR 319
             M+ +G+  T+  N+     +     +   TP   V ++GDD  +DR
Sbjct: 1737 CMRITGEPGTYDDNTDYNLAILYTQYLLHRTP---VLVSGDDSLVDR 1780


>ref|NP_068549.1| replicase [Botrytis virus F] gi|81968259|sp|Q9DRA1.1|RDRP_BOTVF
            RecName: Full=RNA replication protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase; Includes: RecName: Full=Methyltransferase
            gi|10801178|gb|AAG23416.1|AF238884_2 replicase [Botrytis
            virus F]
          Length = 1896

 Score = 94.7 bits (234), Expect = 1e-15
 Identities = 95/382 (24%), Positives = 156/382 (40%), Gaps = 5/382 (1%)
 Frame = -2

Query: 2613 QHPTMEAPEVPKIGSSHAADRAWRNNQPPQPARWTELRNDLMRVVQPYLDMALPAVPLNA 2434
            Q P    P VP  G+S A      N+   Q AR    +   M V QP             
Sbjct: 966  QRPRHPLPPVPTGGAS-APSNDKLNSAAKQYARLVAGKTRQMTVAQP------------- 1011

Query: 2433 QRFEYTADVQRAARLVADL-RAHPGVLESFNNPQIIQSLDAIVDTWRASGKPCTKPIVAY 2257
                      R+   + DL R + G + +    Q    LDA +D+W  +G   +  ++ +
Sbjct: 1012 ----------RSKAYLRDLKRGNIGTIPTAEAEQ----LDAYIDSWAVNGFNRSVHVIYF 1057

Query: 2256 FGVWGSGKTTATMGYMAGLSEERR---RQTRVVSHTESLRAQSKLALDFPSLRGFNFPTL 2086
             G+ G+GK+   M     L +E +   +  R+V+ T++LR      L  P+   ++  T 
Sbjct: 1058 CGLPGTGKSRRCMKMTERLLKENKYLAQTVRIVTPTDNLRNSVARQLKPPTESSYSVQTY 1117

Query: 2085 ASIITEPSTGPV-VFDDAGKFWGGMLDLVMLCNPLIDEIVLNGDPAQGLSQFPVAGTQSQ 1909
             + I +PS GPV + D+ GK   G L+ V+  NP +  ++   DP QG+ +  +      
Sbjct: 1118 ETPIRQPSLGPVLIVDEYGKMPAGWLETVLFLNPRVQMVIFTADPTQGIFRTRIPDAYCC 1177

Query: 1908 FDANPLSAVAHLITEYATVTHRGFRLLADTLGVHTTNINEGHITHTVAPKIGLPVLTSSP 1729
               +   A+A    EY  V+ R    +A  LG+ TT+   G I  +    +    +    
Sbjct: 1178 RIPSSTEAIASYAHEYRRVSDRPAPGVARALGLPTTSRRPGQIETSTELNVDWITVRPEG 1237

Query: 1728 RYAGVLISSGRQAYTFASVQGEDFKTDVEVDMTALEDAVLDRSAYVGLTRSKTGCYVHMS 1549
              A    + G + YT+A+ QGE F    ++ +        DR  +  LTR   G      
Sbjct: 1238 ERAAWHNTWGGKVYTYATCQGETFHRAYQMVINGNTRFWDDRDLFAALTR---GSGTLRL 1294

Query: 1548 AMDASSNIRAPPTASDLMNGLI 1483
              +  S+   P + S L N L+
Sbjct: 1295 IYETQSSKPLPRSTSKLYNALL 1316



 Score = 93.2 bits (230), Expect = 3e-15
 Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 3/295 (1%)
 Frame = -2

Query: 1197 REVPGRGGATDQFKETAFVNPHDHKRKDTSTYFLSVQKRLKTMSAKANARRMARCKRL-- 1024
            R+V G G   D F E        H+  D +T  ++  KRL+     AN R +A  K    
Sbjct: 1481 RQVHGSGDDRDVFLE--------HRGDDKATANITYAKRLRFSQRAANERSIAATKVAGS 1532

Query: 1023 DMCDEFDKLVPHPPKWSAMKHAEYCDL-TITEYESHRTKEAVYAKLDAHDPDRTGSDIKI 847
            ++ + F + +P P +       E C     T + + +    +    +  DP  + + IK+
Sbjct: 1533 ELFEAFTRAIPLPQETFNDSLLEECRTENDTVHLTSKPLATLINNAERSDPSWSLNMIKL 1592

Query: 846  SLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLENELFDAFPSNFLFYRRM 667
             +K Q +KK EK    +A  GQ I  +     L+  PYA +++  +    P +   + R 
Sbjct: 1593 FIKGQTVKKLEKMGS-DATAGQSIASFRAEVLLAWGPYARYIDRRIRALLPPHVYIHSRR 1651

Query: 666  NPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMHKCGFPAEYIKDYIVRR 487
              + F       W         D T +D   DA  +NF+  +M +  FP + I+ Y+  +
Sbjct: 1652 TNEDFEKFVAAHWDHTRESTDGDYTAYDASQDATFVNFETLLMRRLDFPLDIIEAYVEMK 1711

Query: 486  LSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADTVAINGDDEAID 322
             S  S  GP+A M+ SG+ +T+  N++          EV P+      GDD++I+
Sbjct: 1712 ASITSHFGPLAIMRFSGEVWTYLFNTLGNIAFTYAKYEV-PSVAQVYGGDDKSIN 1765


>gb|AFV73358.1| 195 kDa replicase [Grapevine virus A]
          Length = 1710

 Score = 91.7 bits (226), Expect = 8e-15
 Identities = 79/306 (25%), Positives = 128/306 (41%), Gaps = 14/306 (4%)
 Frame = -2

Query: 1209 AKEDREVPGRGGATDQFKETAFV----NPHDHKR-------KDTSTYFLSVQKRLKTMSA 1063
            AKEDRE     G T+Q  E  +     NP  HK         DT+T+ +SV+KRL+  S 
Sbjct: 1265 AKEDREQYTDAGRTEQIDEEGYAQWSANPMSHKALYLRHTSDDTATFMMSVKKRLRYRSY 1324

Query: 1062 KANARRMARCKRLDMCDEFDKLVPHPPKW---SAMKHAEYCDLTITEYESHRTKEAVYAK 892
            + N R+   C  +    +   ++    +W    ++   E C+         ++   +   
Sbjct: 1325 EGNRRKYLACHGIGR--QMFSVLKETYQWRDIESLPELEKCEKEFMRKRVEKSAALIEQH 1382

Query: 891  LDAHDPDRTGSDIKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLENE 712
                DPD   + +KI LK Q   K EKR   +A  GQ I  +         P     E  
Sbjct: 1383 SGRSDPDWPSNYLKIFLKQQTCTKMEKRGV-DAKAGQTIACFAHSVLCRFGPLLRQTEKA 1441

Query: 711  LFDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMHK 532
              +  P N + Y + N    +D + K W  G     SD   +D   D  +L+ ++ V+  
Sbjct: 1442 FRELLPENVMIYSQKNYMD-LDKWAKTWVEGMLGTDSDYEAFDRSQDEKILDMEIEVLKF 1500

Query: 531  CGFPAEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADTV 352
              +P E IK+Y   +L   S  G +A M+ SG+  T+  N++   V + +   ++    +
Sbjct: 1501 FLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHLSKNTPI 1560

Query: 351  AINGDD 334
               GDD
Sbjct: 1561 CFAGDD 1566


>gb|AHJ80324.1| replicase [Cherry rusty mottle associated virus]
          Length = 2026

 Score = 91.3 bits (225), Expect = 1e-14
 Identities = 160/728 (21%), Positives = 275/728 (37%), Gaps = 75/728 (10%)
 Frame = -2

Query: 2262 AYFGVWGSGKTTATMGYMAGLSEERRRQTRVVSHTESLRAQSKLALDFPSLRGFNFPTLA 2083
            A  G +GSGK+   +     +      Q  ++S   SL+ Q    LD  + R     T  
Sbjct: 1215 AIVGTFGSGKSHNVIEL---IRHNLGYQNLIISPRRSLKDQFISMLDLVNARSKGKKTST 1271

Query: 2082 SIITEP---------STGPVVFDDAGKFWGGMLDLVMLCNPLIDEIVLNGDPAQGLSQFP 1930
             ++T               +  D+A     G LDL+ L       I++ GDPAQ  S + 
Sbjct: 1272 DVVTFEVALKKNGLLKKARIFIDEAQLLPPGYLDLICLIAGSDSSILVMGDPAQ--SSYD 1329

Query: 1929 VAGTQSQFDANPLSAVAHLITEYATV-------------------THRGFRLLADTLGVH 1807
             A  +  F A     +  L+     V                   T    RL  +     
Sbjct: 1330 SAEDRVMF-AGEKGCLDRLLEGKKYVYLSESKRFRNPMFVGRLPCTFDSSRLTLEKEEYA 1388

Query: 1806 TTNINEGHITHTVAPKIGLPVLTSSPRYAGVLISSGRQA--YTFASVQGEDFKTDVEVDM 1633
              +  +      ++PKI   +++S      V  + GR    +TF    G +F     V +
Sbjct: 1389 VFDSFKAFKADYLSPKIKTFLVSSFTEKTVVKANMGRNVSIFTFGESTGMNFDY---VCV 1445

Query: 1632 TALEDAVL--DRSAYVGLTRSKTGCYVHMSAMDASSNIRAPPTASDLMNGLIYAVRQQGG 1459
               +D++L  +R   V L+R+K    +++S ++ S  +  P   + +M G+++       
Sbjct: 1446 LLTQDSMLVDERRWVVALSRAK----INISFINLSG-LSLPEFCTQMMGGVVHKF----- 1495

Query: 1458 SALQRPDAIVKAAFYRHLHTAMPALPWFAMFGSSIPRQDFQN-------------VFPAT 1318
                        A +  L   +P  P F+     + + +                VF   
Sbjct: 1496 --------FTSTATFNDLRELLPGDPIFSKKFQRLGKDEVDREGRLSGDPWLKTKVFLGQ 1547

Query: 1317 ETHRVVESNVGDHIVSDATEAVAPAIDGFVP-----ETHWHAKEDREVPGRGGATDQFKE 1153
               R+ E++V D  + D    V   +          +     KE RE       T+QF E
Sbjct: 1548 REERIEEASVNDEGLKDIKVKVHCPVGSIGSTLADIQAGVKVKEAREFRVENLVTEQFSE 1607

Query: 1152 T---------------AFVNPHDHKRKDTSTYFLSVQKRLK-TMSAKANARRMARCKRLD 1021
            T                 + P  HK  DT+T+ ++ +KRLK +  A+   + MA     +
Sbjct: 1608 THKGKGKVLTAAPDNFEAIYPR-HKAGDTATFVMAARKRLKFSFPARERQKYMAAIPYGE 1666

Query: 1020 -MCDEFDKLVPHPPKWSAMKHAEYCDLTITEYESHRTKEAVYAKLDAH----DPDRTGSD 856
             M   F K V   P +      E    +  ++E  + ++++ A L+ H    DPD     
Sbjct: 1667 SMLQVFLKRVKLQPNFDHRLFEE----SRADFEEKKLQKSM-ATLENHSGRSDPDWGVEK 1721

Query: 855  IKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLENELFDAFPSNFLFY 676
              I +K+Q+  K + R +  A  GQ +  +        APY  ++E ++F A PSN   +
Sbjct: 1722 ALIFMKSQLCTKFDNRFRN-AKAGQTLACFHHDVLCRLAPYIRYIEKKVFKALPSNLYIH 1780

Query: 675  RRMNPQQFVDAYKKRWRVGN---GVHT-SDVTRWDVGCDAGVLNFDVHVMHKCGFPAEYI 508
               N     D     W + N   GV T SD   +D   DA +L F+V +M     P + I
Sbjct: 1781 SARNFDDLRD-----WVIRNNFTGVCTESDYEAFDSSQDANILAFEVSLMEYLRLPRDLI 1835

Query: 507  KDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADTVAINGDDEA 328
            +DY   +  + S+ G  A M+ +G+  T+  N++   V   +  E+   + +   GDD  
Sbjct: 1836 EDYKYLKFHTHSKLGQFAVMRFTGEAGTFLFNTLANMVFTFMRYEINGKEAICFAGDDMC 1895

Query: 327  IDRFCDSK 304
             ++    K
Sbjct: 1896 ANKLLRKK 1903


>gb|ABH07008.1| putative replicase [Grapevine virus A]
          Length = 1710

 Score = 90.5 bits (223), Expect = 2e-14
 Identities = 80/307 (26%), Positives = 132/307 (42%), Gaps = 15/307 (4%)
 Frame = -2

Query: 1209 AKEDREVPGRGGATDQFKETAF----VNPHDHKR-------KDTSTYFLSVQKRLKTMSA 1063
            AKEDRE     G T+Q  E  +     NP  HK         DT+T+ +SV+KRL+  S 
Sbjct: 1265 AKEDREQYTEAGRTEQIDEEGYGQWGANPMTHKALYLRHTSDDTATFMMSVKKRLRYRSY 1324

Query: 1062 KANARRMARCKRLDMCDEFDKLVPHPPKWSAMKHAEYCDLTITEYESHRTKEAVYAKLDA 883
            + N R+   C  +    +   ++    +W  ++     +    E+   R +++  A ++ 
Sbjct: 1325 EGNRRKYLSCHGIGR--QMFSVLKETYQWKDIESLPELEKCEKEFMRKRVEKSA-ALIEQ 1381

Query: 882  H----DPDRTGSDIKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLEN 715
            H    DPD   + +KI LK Q   K EKR   +A  GQ I  +         P     E 
Sbjct: 1382 HSGRSDPDWPSNYLKIFLKQQTCTKMEKRGV-DAKAGQTIACFAHSVLCRFGPLLRQTEK 1440

Query: 714  ELFDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMH 535
               +  P N + Y + N    +D + K W  G     SD   +D   D  +L+ ++ V+ 
Sbjct: 1441 AFRELLPENVMIYSQKNYMD-LDKWSKTWVEGMLGTDSDYEAFDRSQDEKILDMEIEVLR 1499

Query: 534  KCGFPAEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADT 355
               +P E I++Y   +L   S  G +A M+ SG+  T+  N++   V + +   +     
Sbjct: 1500 FFLWPEEMIQEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHLDKNTP 1559

Query: 354  VAINGDD 334
            +   GDD
Sbjct: 1560 ICFAGDD 1566


>gb|ABG37965.1| putative replicase [Grapevine virus A]
          Length = 1710

 Score = 90.5 bits (223), Expect = 2e-14
 Identities = 80/307 (26%), Positives = 132/307 (42%), Gaps = 15/307 (4%)
 Frame = -2

Query: 1209 AKEDREVPGRGGATDQFKETAF----VNPHDHKR-------KDTSTYFLSVQKRLKTMSA 1063
            AKEDRE     G T+Q  E  +     NP  HK         DT+T+ +SV+KRL+  S 
Sbjct: 1265 AKEDREQYTEAGRTEQIDEEGYGQWGANPMTHKALYLRHTSDDTATFMMSVKKRLRYRSY 1324

Query: 1062 KANARRMARCKRLDMCDEFDKLVPHPPKWSAMKHAEYCDLTITEYESHRTKEAVYAKLDA 883
            + N R+   C  +    +   ++    +W  ++     +    E+   R +++  A ++ 
Sbjct: 1325 EGNRRKYLSCHGIGR--QMFSVLKETYQWKDIESLPELEKCEKEFMRKRVEKSA-ALIEQ 1381

Query: 882  H----DPDRTGSDIKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLEN 715
            H    DPD   + +KI LK Q   K EKR   +A  GQ I  +         P     E 
Sbjct: 1382 HSGRSDPDWPSNYLKIFLKQQTCTKMEKRGV-DAKAGQTIACFAHSVLCRFGPLLRQTEK 1440

Query: 714  ELFDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMH 535
               +  P N + Y + N    +D + K W  G     SD   +D   D  +L+ ++ V+ 
Sbjct: 1441 AFRELLPENVMIYSQKNYMD-LDKWSKTWVEGMLGTDSDYEAFDRSQDEKILDMEIEVLR 1499

Query: 534  KCGFPAEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADT 355
               +P E I++Y   +L   S  G +A M+ SG+  T+  N++   V + +   +     
Sbjct: 1500 FFLWPEEMIQEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHLDKNTP 1559

Query: 354  VAINGDD 334
            +   GDD
Sbjct: 1560 ICFAGDD 1566


>gb|ABH06983.2| 194 kDa protein [Grapevine virus A]
          Length = 1707

 Score = 89.0 bits (219), Expect = 5e-14
 Identities = 80/305 (26%), Positives = 128/305 (41%), Gaps = 13/305 (4%)
 Frame = -2

Query: 1209 AKEDREVPGRGGATDQFKETAF----VNPHDHKR-------KDTSTYFLSVQKRLKTMSA 1063
            AKEDRE     G T+Q  E  +     NP  HK         DT+T+ +SV+KRL+  + 
Sbjct: 1262 AKEDREQYTEAGRTEQIDEEGYKGEDANPMTHKALYLRHTSDDTATFMMSVKKRLRFRNF 1321

Query: 1062 KANARRMARCKRL--DMCDEFDKLVPHPPKWSAMKHAEYCDLTITEYESHRTKEAVYAKL 889
            +AN R+   C  +   M   F K +    +  ++   E C++   +    ++   +    
Sbjct: 1322 EANRRKYKACHGIGQQMFSVF-KEIYQLKEIDSLPELERCEMEFMKKRVEKSAVLIEQHA 1380

Query: 888  DAHDPDRTGSDIKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLENEL 709
               DPD   + +KI LK Q   K EKR   +A  GQ I  +         P     E  L
Sbjct: 1381 GRSDPDWPSNYLKIFLKQQTCTKMEKRGV-DAKAGQTIACFAHSVLCKFGPTLRQTEKAL 1439

Query: 708  FDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMHKC 529
             +  P N + Y + N    +D + + W        SD   +D   D  VL+ +V V+   
Sbjct: 1440 RELLPENVMIYSQKNYMD-LDKWARTWVESMTGTDSDYEAFDRSQDEKVLDLEVEVLRFF 1498

Query: 528  GFPAEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADTVA 349
             +P + I++Y   +L      G +A M+ SG+  T+  N++   V   +   +     V 
Sbjct: 1499 LWPEDLIREYEELKLMMGCSLGDLAVMRFSGEFGTFFFNTVCNMVFTCMRYHIDRNTPVC 1558

Query: 348  INGDD 334
              GDD
Sbjct: 1559 FAGDD 1563


>ref|YP_002308565.1| putative polyprotein [Peach mosaic virus] gi|75266362|gb|ABA18636.1|
            putative polyprotein [Peach mosaic virus]
          Length = 1886

 Score = 89.0 bits (219), Expect = 5e-14
 Identities = 78/318 (24%), Positives = 139/318 (43%), Gaps = 18/318 (5%)
 Frame = -2

Query: 1233 FVPETHWHAKEDREVPGRGGATDQFKETAFVN---PHD-------------HKRKDTSTY 1102
            +V  +   A+EDRE  GR G ++QF+E A  N   P+              H+  D  T+
Sbjct: 1417 YVELSRMKAREDREFKGRDGWSNQFREEAGPNWKFPYKVAQPMNFEAIYPRHRMDDDITF 1476

Query: 1101 FLSVQKRLKTMSAKANARRMARCKRLD--MCDEFDKLVPHPPKWSAMKHAEYCDLTITEY 928
            + +++KRL+  S   N  +  + +     +   F K V   P  +       C     E 
Sbjct: 1477 YAAIKKRLRFDSVANNYTKFKQSQSRGQYLLQVFLKHVDLKPSRNQAL-LNQCKQEFEET 1535

Query: 927  ESHRTKEAVYAKLDAHDPDRTGSDIKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTL 748
            +  ++   + A     DPD     I + +K+Q+  K EKR + +A  GQ +  +     +
Sbjct: 1536 KLSKSAATIGAHAQRSDPDWPLDRIFLFMKSQLCTKFEKRFE-DAKAGQTLACFQHKILV 1594

Query: 747  SDAPYALFLENELFDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDA 568
              +P+  ++E  L    P NF  ++R N  + ++A+ KR+  G+    SD T +DV  D 
Sbjct: 1595 EFSPWCRYVEKILTSCLPENFYIHQRKNFSE-LEAFAKRYSDGSVCVESDYTAFDVSQDH 1653

Query: 567  GVLNFDVHVMHKCGFPAEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVA 388
             +L F+V ++   G+    +  YI  + +   + G  A M+ +G+  T+  N++      
Sbjct: 1654 TILAFEVELLRYIGWDEAVLNSYIKMKCTLGCRLGGFAIMRFTGEFSTFLFNTLANMAFT 1713

Query: 387  SIINEVTPADTVAINGDD 334
                EV     +   GDD
Sbjct: 1714 FCRYEVKKGTPICFAGDD 1731


>gb|AFU54613.1| RNA-dependent RNA polymerase [Cherry green ring mottle virus]
          Length = 2025

 Score = 88.6 bits (218), Expect = 7e-14
 Identities = 172/764 (22%), Positives = 292/764 (38%), Gaps = 76/764 (9%)
 Frame = -2

Query: 2397 ARLVAD--LRAHPGVLESFNNPQIIQSLDAIVDTWRASGKPC--TKPIVAYFGVWGSGKT 2230
            A+++A+  L    GV+   N+  +    D + DT     K C   + I    G +GSGK+
Sbjct: 1172 AKILANSFLSGQTGVI---NSKIVAGQFDWLADT----NKLCFDERKIGVMVGTFGSGKS 1224

Query: 2229 TATMGYMAGLSEERRRQTRVVSHTESLRAQSKLALDFPSLRGFNFPTLASIITEPSTGPV 2050
             + +     L      Q  ++S   SL+ Q    LD  S R         I TE +T  V
Sbjct: 1225 HSVVEL---LKANLNYQNIIISPRRSLKDQFISMLDLVSKRKKG----KKISTEVATFEV 1277

Query: 2049 VFDDAGKFWG-------------GMLDLVMLCNPLIDEIVLNGDPAQGL-----SQFPVA 1924
                +G                 G LDL+ L       I++ GDPAQ        +    
Sbjct: 1278 ALKKSGVLKKTRIFMDETQLLPPGYLDLICLVAGRDSSILVMGDPAQSSYDSAEDRMVFV 1337

Query: 1923 GTQSQFDANPLSAVAHLITEYATVTHRGF-----------RLLADTLGVHTTNINEGHIT 1777
            G++   D          ++E     +  F           RL  +       +  +    
Sbjct: 1338 GSEGNLDRLLKEKKYVYLSESRRFRNPMFVGRLPCTFDASRLTLEKEEYAVFDNFKDFKA 1397

Query: 1776 HTVAPKIGLPVLTSSPRYAGVLISSGRQA--YTFASVQGEDFKTDVEVDMTALEDAVL-- 1609
              ++PKIG  +++S      V  + GR    YTF    G +F     V +   +D++L  
Sbjct: 1398 DYLSPKIGTFLVSSFTEKTVVKANMGRNVDVYTFGESTGMNFDY---VCVLLTQDSMLVD 1454

Query: 1608 DRSAYVGLTRSKTGC-YVHMSAMDASSNIRAPPTASDLMNGLIYAVRQQGGSALQRPDAI 1432
            +R   V L+R+K    +V++S +            S ++ G+++                
Sbjct: 1455 ERRWVVALSRAKINISFVNLSGLSLQE------FCSQMVGGIVHKF-------------F 1495

Query: 1431 VKAAFYRHLHTAMPALPWFAM----FGSSIPRQDFQ---------NVFPATETHRVVESN 1291
               A Y  L   +P  P F+      GS    ++ +          +F      +  E  
Sbjct: 1496 TSTASYNDLRALLPGDPMFSKKFMRLGSDEVDREARLAGDPWLKTKIFLGQRETKPEEVE 1555

Query: 1290 VGDHIVSDATEAVAPAIDGFVP-----ETHWHAKEDREVPGRGGATDQFKE--------- 1153
            V D+   D    V   +          ++   AKEDRE       TDQF E         
Sbjct: 1556 VDDNGPPDLKIKVHCPVGSLGATFADIQSRVRAKEDREHRIDSLVTDQFAECHKGRGKLL 1615

Query: 1152 TAFVNPHD-----HKRKDTSTYFLSVQKRLK-TMSAKANARRMARCKRLD-MCDEFDKLV 994
            TA  +  +     HK  DT+T+ ++ +KRLK ++ AK   +  A     + M   F K V
Sbjct: 1616 TAAPDNFEAIYPRHKAGDTATFVMAARKRLKFSIPAKEGQKFKAAIPYGESMLQIFLKKV 1675

Query: 993  PHPPKWSAMKHAEYCDLTITEYESHRTKEAVYAKLDAH----DPDRTGSDIKISLKNQVI 826
               P +     +E     ++++E  +  +++ A L+ H    DPD       I  K+Q+ 
Sbjct: 1676 KVQPNFDHKLFSE----AVSDFEEKKLTKSM-ATLENHSGRSDPDWENEKALIFTKSQLC 1730

Query: 825  KKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLENELFDAFPSNFLFYRRMNPQQFVD 646
             K + R +  A  GQ +  +        APY  ++E ++F   P N+  +   N  +   
Sbjct: 1731 TKFDNRFRA-AKAGQTLACFHHNVLCRLAPYIRYIEKKIFAHLPKNYYIHSGKNFDELRG 1789

Query: 645  AYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMHKCGFPAEYIKDYIVRRLSSRSQH 466
               K   VG     SD   +D   DA +L F+V +MH    P + I+DY   + ++RS+ 
Sbjct: 1790 WVLKNSFVGMCTE-SDYEAFDSSQDANILAFEVSLMHYLRLPRDLIEDYKYLKFNTRSKL 1848

Query: 465  GPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADTVAINGDD 334
            G  A M+ +G+  T+  N++   V   +  ++   + +   GDD
Sbjct: 1849 GQFAVMRFTGEAGTFLFNTLANMVFTFMRYDLNGKEAICFAGDD 1892


>ref|YP_004464930.1| unnamed protein product [Bombyx mori Macula-like virus]
            gi|333033738|dbj|BAK23257.1| RNA-dependent RNA polymerase
            [Bombyx mori Macula-like virus]
          Length = 1759

 Score = 88.6 bits (218), Expect = 7e-14
 Identities = 98/384 (25%), Positives = 158/384 (41%), Gaps = 25/384 (6%)
 Frame = -2

Query: 2643 SFRVKVPGGYQHPTMEAPEVPKIGSSHAADRA---WRNNQPPQPARWTELR------NDL 2491
            ++RV    G    T+   + P +   +  D +   W  ++ P  A  + +R      N  
Sbjct: 721  NYRVSYRHGEHLNTIGPDDAPLLSLIYTGDGSIGHWATDESPLSAPLSPIRGSAKTLNSF 780

Query: 2490 MRVVQPYLDMALPAVPLNAQRFEYTADVQRAARLVADLRAHP-GVLESF-----NNPQII 2329
                  + D     +P   Q  EYT    RA  L ++++    GV++S      ++P   
Sbjct: 781  ASTAVRFRDSHGNLLPFR-QVHEYTLCKPRAKNLASNMKNETDGVIQSTLRAASSDPTFF 839

Query: 2328 QSLDAIVDTWRASGKPCTKPIVAYFGVWGSGKTTATMGYMAGLSEERRRQTRVVSHTESL 2149
              LD   D         +  ++   G  G GKT      +   ++  + Q RV   T  L
Sbjct: 840  HRLDQRADF----APQVSVQLIHITGFPGCGKTFPVTQLLK--TKAFKGQYRVAVPTTEL 893

Query: 2148 RAQSKLALDFPSLRGFNFPTLASIITEPSTGPVVFDDAGKFWGGMLDLVMLCNPLIDEIV 1969
            R++ K  +  PS   +   T  + + + S   +V D+  K   G LDL ++ +P +  ++
Sbjct: 894  RSEWKDHMKLPSSEVWRVSTWETSLMK-SAPVLVIDEVYKMPRGFLDLALVADPALQFVI 952

Query: 1968 LNGDPAQGLSQFPVAGTQSQFDANPLSAVAHLITE----------YATVTHRGFRLLADT 1819
            L GDP Q +              NP S+   L++E          Y   THR  R LA  
Sbjct: 953  LLGDPCQTVYS----------SVNPDSSNYRLLSEVEHLKPYRDFYCHWTHRLPRRLARF 1002

Query: 1818 LGVHTTNINEGHITHTVAPKIGLPVLTSSPRYAGVLISSGRQAYTFASVQGEDFKTDVEV 1639
             GV TTN  EG I     P    P+LTSS + A V   +G +A TF S QG  F+   ++
Sbjct: 1003 FGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQI 1062

Query: 1638 DMTALEDAVLDRSAYVGLTRSKTG 1567
             + +   +V   +  V  TRS++G
Sbjct: 1063 FVDSNVASVHVSATLVATTRSRSG 1086


>gb|ABH06992.2| 194 kDa protein [Grapevine virus A]
          Length = 1707

 Score = 88.6 bits (218), Expect = 7e-14
 Identities = 80/305 (26%), Positives = 128/305 (41%), Gaps = 13/305 (4%)
 Frame = -2

Query: 1209 AKEDREVPGRGGATDQFKETAF----VNPHDHKR-------KDTSTYFLSVQKRLKTMSA 1063
            AKE RE     G T+Q  E  +     NP  HK         DT+T+ +SV+KRL+  + 
Sbjct: 1262 AKEHREQYTEAGRTEQIDEEGYKGENANPMTHKALYQRHTSDDTATFLMSVKKRLRFRNY 1321

Query: 1062 KANARRMARCKRL--DMCDEFDKLVPHPPKWSAMKHAEYCDLTITEYESHRTKEAVYAKL 889
            +AN R+   C  +   M   F K +    +  ++   E C++   +    ++   +    
Sbjct: 1322 EANRRKYKACHGIGQQMFSVF-KEIYQLKEIDSLPELERCEMEFMKKRVEKSAGLIEQHA 1380

Query: 888  DAHDPDRTGSDIKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLENEL 709
               DPD   + +KI LK Q   K EKR   +A  GQ I  +         P     E  L
Sbjct: 1381 GRSDPDWPSNYLKIFLKQQTCTKMEKRGV-DAKAGQTIACFAHSVLCRFGPILRQTERAL 1439

Query: 708  FDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMHKC 529
             +  P N + Y + N    +D + + W  G     SD   +D   D  VL+ +V V+   
Sbjct: 1440 RELLPENVMIYSQKNYMD-LDKWARTWVEGMTGTDSDYEAFDRSQDEKVLDLEVEVLRFF 1498

Query: 528  GFPAEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADTVA 349
             +P + I++Y   +L      G +A M+ SG+  T+  N++   V   +   +     V 
Sbjct: 1499 LWPEDLIREYEELKLMMGCSLGDLAVMRFSGEFGTFFFNTVCNMVFTCMRYHIDRNTPVC 1558

Query: 348  INGDD 334
              GDD
Sbjct: 1559 FAGDD 1563


>gb|ABH06988.2| 194 kDa protein [Grapevine virus A]
          Length = 1707

 Score = 87.8 bits (216), Expect = 1e-13
 Identities = 80/305 (26%), Positives = 128/305 (41%), Gaps = 13/305 (4%)
 Frame = -2

Query: 1209 AKEDREVPGRGGATDQFKETAF----VNPHDHKR-------KDTSTYFLSVQKRLKTMSA 1063
            AKE RE     G T+Q  E  +     NP  HK         DT+T+ +SV+KRL+  + 
Sbjct: 1262 AKEYREQYTEAGRTEQIDEEGYKGENANPMTHKALYLRHTSDDTATFMMSVKKRLRFRNF 1321

Query: 1062 KANARRMARCKRL--DMCDEFDKLVPHPPKWSAMKHAEYCDLTITEYESHRTKEAVYAKL 889
            +AN R+   C  +   M   F K +    +  ++   E C++   +    ++   +    
Sbjct: 1322 EANRRKYRACHGIGQQMFSVF-KEIYQLKEIDSLPELERCEMEFMKKRVEKSAGLIEQHA 1380

Query: 888  DAHDPDRTGSDIKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLENEL 709
               DPD   + +KI LK Q   K EKR   +A  GQ I  +         P     E  L
Sbjct: 1381 GRSDPDWPSNYLKIFLKQQTCTKMEKRGV-DAKAGQTIACFAHSVLCRFGPILRQTERAL 1439

Query: 708  FDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMHKC 529
             +  P N + Y + N    +D + + W  G     SD   +D   D  VL+ +V V+   
Sbjct: 1440 RELLPENVMIYSQKNYMD-LDKWARTWVEGMTGTDSDYEAFDRSQDEKVLDLEVEVLRFF 1498

Query: 528  GFPAEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADTVA 349
             +P + I++Y   +L      G +A M+ SG+  T+  N++   V   +   +     V 
Sbjct: 1499 LWPEDLIREYEELKLMMGCSLGDLAVMRFSGEFGTFFFNTVCNMVFTCMRYHIDRNTPVC 1558

Query: 348  INGDD 334
              GDD
Sbjct: 1559 FAGDD 1563


>ref|NP_041257.1| replicase [Ononis yellow mosaic virus]
            gi|130553|sp|P20127.1|POLR_OYMV RecName: Full=RNA
            replicase polyprotein gi|332574|gb|AAA46796.1| replicase
            protein (RP) [Ononis yellow mosaic virus]
          Length = 1776

 Score = 86.3 bits (212), Expect = 3e-13
 Identities = 83/320 (25%), Positives = 137/320 (42%), Gaps = 7/320 (2%)
 Frame = -2

Query: 2424 EYTADVQRAARLVADLR-AHPGVLESFNNPQI------IQSLDAIVDTWRASGKPCTKPI 2266
            ++T  V  A  L+++++    G+    + P        +  LDA +D       P    +
Sbjct: 839  QHTISVPHAKNLISNMKNGFDGITSQLSGPSNKSPKMKLLELDATIDV----SFPRKCDV 894

Query: 2265 VAYFGVWGSGKTTATMGYMAGLSEERRRQTRVVSHTESLRAQSKLALDFPSLRGFNFPTL 2086
            +   G  G GK+         L     R  R+   T  LR++ K  L+ P    +   T 
Sbjct: 895  IHIAGFPGCGKSHPIQKL---LQTPAFRHFRLSVPTNELRSEWKRDLNLPESEVWRLCTW 951

Query: 2085 ASIITEPSTGPVVFDDAGKFWGGMLDLVMLCNPLIDEIVLNGDPAQGLSQFPVAGTQSQF 1906
             + + + S+  +V D+  K   G LDL++L +P I  +++ GDP QG        + +  
Sbjct: 952  ETALFK-SSNILVVDEIYKLPRGYLDLILLADPSIQLVIMLGDPLQGEYHSSHPSSSNSR 1010

Query: 1905 DANPLSAVAHLITEYATVTHRGFRLLADTLGVHTTNINEGHITHTVAPKIGLPVLTSSPR 1726
              +  + ++  I  Y   T+R  + +AD  GV T N NEG I   ++    LP L +S  
Sbjct: 1011 LESETTRLSKYIDCYCWWTYRCPKAVADLFGVKTFNSNEGFIRAVLSHPPNLPNLVNSIA 1070

Query: 1725 YAGVLISSGRQAYTFASVQGEDFKTDVEVDMTALEDAVLDRSAYVGLTRSKTGCYVHMSA 1546
             A  + S G  A T +S QG  +   V V +      +  ++A V LTRS++G Y   S 
Sbjct: 1071 TANTMQSLGHHALTISSSQGMTYSDPVTVLLDRHSLLITPQTALVALTRSRSGIYFIGSM 1130

Query: 1545 MDASSNIRAPPTASDLMNGL 1486
              AS +       S  + GL
Sbjct: 1131 YTASGSAGTSYMFSCALTGL 1150


>gb|AAX07259.1| replicase, partial [Mint virus 2]
          Length = 500

 Score = 85.5 bits (210), Expect = 6e-13
 Identities = 82/307 (26%), Positives = 130/307 (42%), Gaps = 16/307 (5%)
 Frame = -2

Query: 1206 KEDREVPGRGGATDQFKETAF----VNPHDHK-------RKDTSTYFLSVQKRLKTMSAK 1060
            K +REV    G TDQ  E  +     NP  HK         D +T+ LSV+KRL+   A+
Sbjct: 53   KMNREVHTEAGLTDQIDEVGYKGESANPMTHKALYLHHKNDDVATFMLSVKKRLRFRDAE 112

Query: 1059 ANARRMARCK-----RLDMCDEFDKLVPHPPKWSAMKHAEYCDLTITEYESHRTKEAVYA 895
             N+R+  + K        +  +   LV HP   +++   + C+   T     +++  +  
Sbjct: 113  KNSRKYEKNKGFGKQMFKILQQTYNLV-HP---NSLPELDRCEAEFTRKRIAKSRNLIEK 168

Query: 894  KLDAHDPDRTGSDIKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLEN 715
                 DPD   + +KI LK QV  K EKR   +A  GQ I  +         P     E 
Sbjct: 169  HSYRSDPDWPSNYLKIFLKQQVCTKMEKRGV-DAKAGQTIACFSHAVLCRFGPQLRRTEK 227

Query: 714  ELFDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMH 535
             L      N + Y + N    +D + + +  G     SD   +D   D  +L+F+V V+ 
Sbjct: 228  ALRAQLGDNVMIYSQKNYTD-LDNWSRLYVDGMIGTDSDYEAFDRSQDEKILSFEVEVLK 286

Query: 534  KCGFPAEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADT 355
               +P E I +Y+  +L      G +A M+ SG+  T+  N+I   V   +   +T    
Sbjct: 287  FFLWPEELINEYVTLKLMMGCSMGDLAIMRFSGEFGTFFFNTICNMVFTCMRYCITKDTP 346

Query: 354  VAINGDD 334
            +   GDD
Sbjct: 347  ICYAGDD 353


>gb|ACA52189.1| 194 kDa protein [Grapevine virus A]
          Length = 1707

 Score = 85.5 bits (210), Expect = 6e-13
 Identities = 78/305 (25%), Positives = 126/305 (41%), Gaps = 13/305 (4%)
 Frame = -2

Query: 1209 AKEDREVPGRGGATDQFKETAF----VNPHDHKR-------KDTSTYFLSVQKRLKTMSA 1063
            AKE RE     G T+Q  E  +     NP  HK         DT+T+ +SV+KRL+  + 
Sbjct: 1262 AKEYREQYTEAGRTEQIDEEGYKGENANPMTHKALYLRHTSDDTATFMMSVKKRLRFRNF 1321

Query: 1062 KANARRMARCKRL--DMCDEFDKLVPHPPKWSAMKHAEYCDLTITEYESHRTKEAVYAKL 889
            +AN R+   C  +   M   F K +    +  ++   E C++   +    ++   +    
Sbjct: 1322 EANRRKYKACHGIGQQMFSVF-KEIYQLKEIDSLPELERCEMEFMKKRVEKSAGLIEQHA 1380

Query: 888  DAHDPDRTGSDIKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLENEL 709
               DPD   + +KI LK Q   K EKR   +A  GQ I  +         P     E  L
Sbjct: 1381 GRSDPDWPSNYLKIFLKQQTCTKMEKRGV-DAKAGQTIARFAHSVLCRFGPILRQTERAL 1439

Query: 708  FDAFPSNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMHKC 529
             +  P N + Y + N    +D + + W        SD   +D   D  VL+ +V V+   
Sbjct: 1440 RELLPENVMIYSQKNYMD-LDKWARTWVESMTGTDSDYEAFDRSQDEKVLDLEVEVLRFF 1498

Query: 528  GFPAEYIKDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADTVA 349
             +P + I++Y   +L      G +  M+ SG+  T+  N++   V   +   +     V 
Sbjct: 1499 LWPEDLIREYEELKLMMGCSLGDLGVMRFSGEFGTFFFNTVCNMVFTCMRYHIDRNTPVC 1558

Query: 348  INGDD 334
              GDD
Sbjct: 1559 FAGDD 1563


>emb|CAC18739.1| putative RNA polymerase RNA dependant [Cherry green ring mottle
            virus]
          Length = 2026

 Score = 85.1 bits (209), Expect = 8e-13
 Identities = 178/780 (22%), Positives = 296/780 (37%), Gaps = 78/780 (10%)
 Frame = -2

Query: 2439 NAQRFEYTADVQRAARLVAD-LRAHPGVLESFNNPQIIQSLDAIVDTWRASGKPC--TKP 2269
            NA    +T  +  A  L    L    GV+   N+  +    D + DT     K C   + 
Sbjct: 1160 NANVVPFTPSLPIAKTLANSFLSGQTGVI---NSKIVAGQFDWLADT----NKLCFDERK 1212

Query: 2268 IVAYFGVWGSGKTTATMGYMAGLSEERRRQTRVVSHTESLRAQSKLALDFPSLRGFNFPT 2089
            I    G +GSGK+ + +     L      Q  ++S   SL+ Q    LD  S R      
Sbjct: 1213 IGVMVGTFGSGKSHSVVEL---LKANLNYQNIIISPRRSLKEQFIGMLDLVSKRKKG--- 1266

Query: 2088 LASIITEPSTGPVVFDDAGKFWG-------------GMLDLVMLCNPLIDEIVLNGDPAQ 1948
               I TE +T  V    +G                 G LDL+ L       I++ GDPAQ
Sbjct: 1267 -KKISTEVATFEVALKKSGVLKKTRIFMDETQLLPPGYLDLICLVAGRDSSILVMGDPAQ 1325

Query: 1947 GLSQFPVAGTQSQFDANPLSAVAHLITEYATVTHRGFRLLADTL--GVHTTNINEGHIT- 1777
              S +  A  +  F  +    +  L+ E   V     R   + +  G      + G +T 
Sbjct: 1326 --SSYDSAEDRMVFVGSE-GNLDRLLKEKKYVYLSESRRFRNPMFVGRLPCTFDAGRLTL 1382

Query: 1776 ----------------HTVAPKIGLPVLTSSPRYAGVLISSGRQA--YTFASVQGEDFKT 1651
                              ++PKIG  +++S      V  + GR    YTF    G +F  
Sbjct: 1383 EKEEYAVFDNFKDFKADYLSPKIGTFLVSSFTEKTVVKANMGRNVDVYTFGESTGMNFDY 1442

Query: 1650 DVEVDMTALEDAVL--DRSAYVGLTRSKTGC-YVHMSAMDASSNIRAPPTASDLMNGLIY 1480
               V +   +D++L  +R   V L+R+K    ++++S +            S ++ G+I+
Sbjct: 1443 ---VCVLLTQDSMLVDERRWIVALSRAKINISFINLSGLSLQE------FCSQMVGGIIH 1493

Query: 1479 AVRQQGGSALQRPDAIVKAAFYRHLHTAMPALPWFAM----FGSSIPRQDFQ-------- 1336
                               A Y  L   +P  P F+      GS    ++ +        
Sbjct: 1494 KF-------------FTSTANYNDLRALLPGDPMFSKKFMRLGSDEVDREARLAGDPWLK 1540

Query: 1335 -NVFPATETHRVVESNVGDHIVSDATEAVAPAIDGFVP-----ETHWHAKEDREVPGRGG 1174
              +F      +  E  V D    D    V   +          ++   AKE+RE      
Sbjct: 1541 TKIFLGQREAKPEEVEVDDCNPPDLKIKVHCPVSSLGSTFAEIQSKVKAKENREHRIDSL 1600

Query: 1173 ATDQFKE---------TAFVNPHD-----HKRKDTSTYFLSVQKRLK-TMSAKANARRMA 1039
             TDQF E         TA  +  +     HK  DT+T+ ++ +KRLK ++ AK   +  A
Sbjct: 1601 VTDQFAECHKGKGKILTASPDNFEAIYPRHKAGDTATFVMAARKRLKFSIPAKEGQKFKA 1660

Query: 1038 RCKRLD-MCDEFDKLVPHPPKWSAMKHAEYCDLTITEYESHRTKEAVYAKLDAH----DP 874
                 + M   F K V   P +     AE     ++++E  +  +++ A L+ H    DP
Sbjct: 1661 AIPYGESMLQIFLKKVKVQPNFDHKLFAE----AVSDFEEKKLTKSM-ATLENHSGRSDP 1715

Query: 873  DRTGSDIKISLKNQVIKKDEKRHKKEAIPGQLIHEYDIGQTLSDAPYALFLENELFDAFP 694
            D       I +K+Q+  K + R +  A  GQ +  +        APY  ++E ++F   P
Sbjct: 1716 DWEKEKALIFMKSQLCTKFDNRFRA-AKAGQTLACFHHNVLCRLAPYIRYIEKKIFSHLP 1774

Query: 693  SNFLFYRRMNPQQFVDAYKKRWRVGNGVHTSDVTRWDVGCDAGVLNFDVHVMHKCGFPAE 514
             N+  +   N  +      K   VG     SD   +D   DA +L F+V +M     P +
Sbjct: 1775 KNYYIHSGKNFDELRSWVLKNSFVGMCTE-SDYEAFDSSQDANILAFEVSLMRYLRLPRD 1833

Query: 513  YIKDYIVRRLSSRSQHGPMATMQNSGDRYTWSLNSIRRAVVASIINEVTPADTVAINGDD 334
             I+DY   + ++RS+ G  A M+ +G+  T+  N++   V   +  ++   + +   GDD
Sbjct: 1834 LIEDYKYLKFNTRSKLGQFAVMRFTGEAGTFLFNTLANMVFTFMRYDLNGKEAICFAGDD 1893