BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034429
         (743 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S...   138   1e-30
ref|XP_002468588.1| hypothetical protein SORBIDRAFT_01g048580 [S...   135   7e-30
gb|AAO00713.1| retrotransposon protein, putative, unclassified [...   133   4e-29
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...   133   4e-29
gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japo...   130   3e-28

>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
            gi|241926916|gb|EES00061.1| hypothetical protein
            SORBIDRAFT_03g001780 [Sorghum bicolor]
          Length = 631

 Score =  138 bits (347), Expect = 1e-30
 Identities = 84/252 (33%), Positives = 126/252 (50%), Gaps = 9/252 (3%)
 Frame = -1

Query: 740  IFKAISSKISVWRNKLLSKAGRGTLIKSVSTSIPIYNMQTQLFSKEACHPIDQLQDDFWW 561
            I K I S+I  W+ KLLSKAG+  LIK+V+ SIP Y M     +K  C  +  +   +WW
Sbjct: 349  IKKKIWSRIQGWQEKLLSKAGKEILIKAVAQSIPTYAMSCFDLTKGLCDELSSIIGRYWW 408

Query: 560  GSHANGSPKMHYMNWSKCCMKKSFGGYDFKNLYFQNKALIAKTCWHILTEPHLSWVTVLK 381
             S  + + K+H+++W K    K  GG  F++L+  N A++++  W +LT P      VLK
Sbjct: 409  -SQQDKANKIHWISWEKLTQSKEKGGLGFRDLHLFNLAMLSRQAWRLLTNPDSLCGQVLK 467

Query: 380  AKYFPNTDFLHAK-------ATXXXXXXXXXXXXXXX*DTTHGRSSYIWDTNWIPFHPYK 222
            A+YFP++D LH                              +G++  IW+  WIP    +
Sbjct: 468  ARYFPHSDILHCSPRPRISYTWRSILKGVALLKEGIIWRIGNGKNVKIWEHPWIPKGITR 527

Query: 221  KPFGPKPNHQNITFVSDLI--TDNHWKIDLLNSLFLEVEVKAILQIKLSPNTPEKLFWSC 48
            KP  P+     +T V++LI      W   L+N LF   + + ILQI +  +  + L W  
Sbjct: 528  KPITPR-GASLLTRVNELINPVTGEWDEQLVNDLFWPQDAEEILQIPIDEHMEDWLAWHF 586

Query: 47   EKNGKFSVKSAY 12
            +  G FSVKSAY
Sbjct: 587  DATGLFSVKSAY 598


>ref|XP_002468588.1| hypothetical protein SORBIDRAFT_01g048580 [Sorghum bicolor]
           gi|241922442|gb|EER95586.1| hypothetical protein
           SORBIDRAFT_01g048580 [Sorghum bicolor]
          Length = 517

 Score =  135 bits (341), Expect = 7e-30
 Identities = 85/252 (33%), Positives = 125/252 (49%), Gaps = 9/252 (3%)
 Frame = -1

Query: 740 IFKAISSKISVWRNKLLSKAGRGTLIKSVSTSIPIYNMQTQLFSKEACHPIDQLQDDFWW 561
           I + I ++I  W+ KLLSKAG+  LIK+V+ +IP Y M     +K  C  +  +   +WW
Sbjct: 192 IKQRIWARIQGWQEKLLSKAGKEILIKAVAQAIPTYAMSYFNLTKSFCDDLSSMVGRYWW 251

Query: 560 GSHANGSPKMHYMNWSKCCMKKSFGGYDFKNLYFQNKALIAKTCWHILTEPHLSWVTVLK 381
            S  + + K+H+++W K  + K  GG  F++LY  N A++A+  W IL EP      VLK
Sbjct: 252 -SEQDKTNKIHWLSWEKLTLSKKRGGLGFRDLYHFNLAMLARQAWRILIEPDTLCGRVLK 310

Query: 380 AKYFPNTDFLHAKAT-------XXXXXXXXXXXXXXX*DTTHGRSSYIWDTNWIPFHPYK 222
           A+YFPN++ L  KA                            G +  IW   WIP    +
Sbjct: 311 ARYFPNSNILQCKARAGILYTWRSIIDGINLLKEGIIWRIGSGSNVNIWTDPWIPRGTTR 370

Query: 221 KPFGPKPNHQNITFVSDLI--TDNHWKIDLLNSLFLEVEVKAILQIKLSPNTPEKLFWSC 48
           KP  P+  +  IT VSDLI  +   W  +L++ +F   + +AIL I       +   W  
Sbjct: 371 KPITPRGRYL-ITKVSDLINPSTGTWDENLISDVFWPEDAEAILMIPTDYEAVDWPAWHY 429

Query: 47  EKNGKFSVKSAY 12
           +  G FSVKSAY
Sbjct: 430 DSKGVFSVKSAY 441


>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1557

 Score =  133 bits (334), Expect = 4e-29
 Identities = 81/254 (31%), Positives = 121/254 (47%), Gaps = 13/254 (5%)
 Frame = -1

Query: 728  ISSKISVWRNKLLSKAGRGTLIKSVSTSIPIYNMQTQLFSKEACHPIDQLQDDFWWGSHA 549
            I  KI  W    LS  G+  LIK+V  +IP+Y M      +  C  +  L  +FWWG+  
Sbjct: 1141 IWKKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAE- 1199

Query: 548  NGSPKMHYMNWSKCCMKKSFGGYDFKNLYFQNKALIAKTCWHILTEPHLSWVTVLKAKYF 369
             G  K H+  W      KS GG  FK++   N+AL+A+  W ++  P      VLKAKY+
Sbjct: 1200 KGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYY 1259

Query: 368  PNTDFLH-------AKATXXXXXXXXXXXXXXX*DTTHGRSSYIWDTNWIPFHPYKKPFG 210
            PN   +        +                      +GRS  +W   W+P    ++P  
Sbjct: 1260 PNGSIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPIT 1319

Query: 209  PKPNHQNITFVSDLITDN-HWKIDLLNSLFLEVEVKAILQIKLSPNTPEK-LFWSCEKNG 36
            PK N+  I +V+DL+ DN  W  + +N +FL V+V+ IL+++ S    E  + W  +K G
Sbjct: 1320 PK-NNCRIKWVADLMLDNGMWDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKLG 1378

Query: 35   KFSVKSAY----NW 6
             FSV++AY    NW
Sbjct: 1379 NFSVRTAYRLAENW 1392


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1585

 Score =  133 bits (334), Expect = 4e-29
 Identities = 81/254 (31%), Positives = 121/254 (47%), Gaps = 13/254 (5%)
 Frame = -1

Query: 728  ISSKISVWRNKLLSKAGRGTLIKSVSTSIPIYNMQTQLFSKEACHPIDQLQDDFWWGSHA 549
            I  KI  W    LS  G+  LIK+V  +IP+Y M      +  C  +  L  +FWWG+  
Sbjct: 1169 IWKKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAE- 1227

Query: 548  NGSPKMHYMNWSKCCMKKSFGGYDFKNLYFQNKALIAKTCWHILTEPHLSWVTVLKAKYF 369
             G  K H+  W      KS GG  FK++   N+AL+A+  W ++  P      VLKAKY+
Sbjct: 1228 KGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYY 1287

Query: 368  PNTDFLH-------AKATXXXXXXXXXXXXXXX*DTTHGRSSYIWDTNWIPFHPYKKPFG 210
            PN   +        +                      +GRS  +W   W+P    ++P  
Sbjct: 1288 PNGSIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPIT 1347

Query: 209  PKPNHQNITFVSDLITDN-HWKIDLLNSLFLEVEVKAILQIKLSPNTPEK-LFWSCEKNG 36
            PK N+  I +V+DL+ DN  W  + +N +FL V+V+ IL+++ S    E  + W  +K G
Sbjct: 1348 PK-NNCRIKWVADLMLDNGMWDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKLG 1406

Query: 35   KFSVKSAY----NW 6
             FSV++AY    NW
Sbjct: 1407 NFSVRTAYRLAENW 1420


>gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japonica Group]
          Length = 615

 Score =  130 bits (327), Expect = 3e-28
 Identities = 78/246 (31%), Positives = 119/246 (48%), Gaps = 9/246 (3%)
 Frame = -1

Query: 719 KISVWRNKLLSKAGRGTLIKSVSTSIPIYNMQTQLFSKEACHPIDQLQDDFWWGSHANGS 540
           ++  W+ +LLSKAG+  LIKSV  SIP Y M     +K  C+ +  L   FWW    N +
Sbjct: 231 RLQGWKERLLSKAGKEILIKSVVQSIPTYAMSCFDLTKTLCNELGSLVCRFWWAQQENEN 290

Query: 539 PKMHYMNWSKCCMKKSFGGYDFKNLYFQNKALIAKTCWHILTEPHLSWVTVLKAKYFPNT 360
            K+H+++W   C +K  GG  +++L+  N A++A+  W ++ EP      VL+AKYFP  
Sbjct: 291 -KVHWVSWELLCRRKEQGGIGYRDLHLFNLAMLARQGWRLIMEPMSLCAQVLRAKYFPTG 349

Query: 359 DFLHAK-------ATXXXXXXXXXXXXXXX*DTTHGRSSYIWDTNWIPFHPYKKPFGPKP 201
           D +  +       +                     G +  IW   W+P    ++P  P+ 
Sbjct: 350 DLMAVREKPGISYSWRSIVRGIQALKKGLIWRVGDGTNIDIWHDPWLPSGITRRPITPR- 408

Query: 200 NHQNITFVSDLI--TDNHWKIDLLNSLFLEVEVKAILQIKLSPNTPEKLFWSCEKNGKFS 27
               +  V+DLI  T   W  +L+  LF E +VK IL I +     + L W  +  G FS
Sbjct: 409 GRTVVNKVTDLIDPTIGKWDKELIEGLFWEEDVKQILTIPIRAGVEDGLAWHFDNRGIFS 468

Query: 26  VKSAYN 9
           VKSAY+
Sbjct: 469 VKSAYH 474