BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030514
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...   125   5e-27
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   124   1e-26
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   123   2e-26
gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]             122   3e-26
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   122   3e-26

>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score =  125 bits (313), Expect = 5e-27
 Identities = 61/119 (51%), Positives = 82/119 (68%)
 Frame = -1

Query: 401  CLETVSYRVLLNGSPLSHIFPQRGLRQEDPLSPYLFILVTEALSRLLGKAEEEKKLSGIK 222
            C+E+V Y V+LNG  +  I P RGLRQ DPLSPYLFI+  E LS L+ +AE    +SG K
Sbjct: 1033 CVESVDYSVILNGEKIGPIIPGRGLRQGDPLSPYLFIICAEGLSSLIRQAEGSGTISGAK 1092

Query: 221  IRKRSPSISHLLYADDLIVFSKASFEEASNMKELLEKYCNATGQEVNWHKSSAYFSQNV 45
            I K +P ISHLL+ADD  +F KA   +A  MK +LE Y +++GQ +N+ KS  ++S+NV
Sbjct: 1093 ICKNAPIISHLLFADDCFLFFKAKSGQAQGMKNILEMYESSSGQSINFQKSEVFYSRNV 1151


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score =  124 bits (310), Expect = 1e-26
 Identities = 57/131 (43%), Positives = 93/131 (70%)
 Frame = -1

Query: 404 KCLETVSYRVLLNGSPLSHIFPQRGLRQEDPLSPYLFILVTEALSRLLGKAEEEKKLSGI 225
           +C+++V Y+VL+NG+P   I P RGLRQ DPLSPYLF++ TE L ++L  AE++ +++G+
Sbjct: 608 ECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGL 667

Query: 224 KIRKRSPSISHLLYADDLIVFSKASFEEASNMKELLEKYCNATGQEVNWHKSSAYFSQNV 45
           K+ + +P ISHLL+ADD + + K + E    +  ++E+Y  A+GQ VN+ KSS YF +++
Sbjct: 668 KVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHI 727

Query: 44  HHRHQKILIKR 12
               ++ L+KR
Sbjct: 728 -SEERRCLVKR 737


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  123 bits (308), Expect = 2e-26
 Identities = 59/119 (49%), Positives = 83/119 (69%)
 Frame = -1

Query: 401 CLETVSYRVLLNGSPLSHIFPQRGLRQEDPLSPYLFILVTEALSRLLGKAEEEKKLSGIK 222
           C+ TV Y+VL+NG P   I P+RGLRQ DPLSPYLFIL TE L   + KAE +  ++GIK
Sbjct: 393 CITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIK 452

Query: 221 IRKRSPSISHLLYADDLIVFSKASFEEASNMKELLEKYCNATGQEVNWHKSSAYFSQNV 45
           +   SP++SHLL+ADD + F KA+ E+   + E+L++Y + +GQ++N+ KSS  F   V
Sbjct: 453 VATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKV 511


>gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]
          Length = 1023

 Score =  122 bits (306), Expect = 3e-26
 Identities = 62/119 (52%), Positives = 82/119 (68%)
 Frame = -1

Query: 401 CLETVSYRVLLNGSPLSHIFPQRGLRQEDPLSPYLFILVTEALSRLLGKAEEEKKLSGIK 222
           C+ TV YRVLLNG P   I P+RGLRQ DPLSPYLFIL TE L   + KAE+EK ++GIK
Sbjct: 459 CITTVQYRVLLNGQPRGLIVPKRGLRQGDPLSPYLFILCTEVLIANIRKAEQEKLITGIK 518

Query: 221 IRKRSPSISHLLYADDLIVFSKASFEEASNMKELLEKYCNATGQEVNWHKSSAYFSQNV 45
           +   SPS+SHLL+A+D + F KA+ E+   +  +L++Y   +GQ +N+ KSS  F   V
Sbjct: 519 VATASPSVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHKV 577


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  122 bits (306), Expect = 3e-26
 Identities = 59/119 (49%), Positives = 81/119 (68%)
 Frame = -1

Query: 401  CLETVSYRVLLNGSPLSHIFPQRGLRQEDPLSPYLFILVTEALSRLLGKAEEEKKLSGIK 222
            C+ +VSY VL+NGSP   IFP RG+RQ DPLSPYLF+   E LS +L KAE  K++ G+K
Sbjct: 971  CVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMK 1030

Query: 221  IRKRSPSISHLLYADDLIVFSKASFEEASNMKELLEKYCNATGQEVNWHKSSAYFSQNV 45
            I K   +ISHLL+ADD + F +AS +    +  + +KY  A+GQ++N+ KSS  F Q +
Sbjct: 1031 ITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKI 1089