BLASTX nr result
ID: Coptis25_contig00029837
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00029837
(906 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22241.3| unnamed protein product [Vitis vinifera] 228 2e-57
ref|XP_002278558.1| PREDICTED: pentatricopeptide repeat-containi... 228 2e-57
ref|XP_003553062.1| PREDICTED: pentatricopeptide repeat-containi... 224 3e-56
ref|XP_002533116.1| pentatricopeptide repeat-containing protein,... 196 6e-48
ref|XP_002323869.1| predicted protein [Populus trichocarpa] gi|2... 196 6e-48
>emb|CBI22241.3| unnamed protein product [Vitis vinifera]
Length = 1256
Score = 228 bits (580), Expect = 2e-57
Identities = 120/300 (40%), Positives = 176/300 (58%)
Frame = +2
Query: 5 LFEEFPELAYQLDQETLNSVVRVISKREVAFKGMRVLAGMLHRSFSIDNETFTVXXXXXX 184
L E+ P+L Q+D+ETLN +V+ K+ KG +L GML R S+ +ET+
Sbjct: 606 LLEKMPKLVNQVDEETLNLLVQTHCKKGFIGKGKIILNGMLQRHLSVKSETYVALLAGLC 665
Query: 185 XXXXQKEIRKCWELALTHKWLPCLKDCKALWDCLCQQGMLQEALQLFENMLVASLHSFSD 364
+ IR CW+LA KWL LKDCK L CLCQQ L+EAL+L E+ML H D
Sbjct: 666 KKGNSRTIRCCWDLARRDKWLLELKDCKVLVGCLCQQKFLKEALELLESMLATYPHLRLD 725
Query: 365 ISNIFSEVLSGSGHAHFAVVFLDEVVRQRELLSDSAYSHIVSGLCKEKGFQEAFDVLDAM 544
+ N+F E L G A +DE ++Q +L +A+SH++SG CKEK F EAF + ++M
Sbjct: 726 VCNMFLEKLCVVGFTTIAHALVDEFLQQGCILDHTAHSHLISGFCKEKRFSEAFTIFESM 785
Query: 545 LEKNIAPCVDVCCQLIPQLCRLHRWEKAVVLKEIVSKKDPASCLSVYYALICGLYRGGMV 724
KN+ PC+D LIPQLCR +R EKA+ LK++ ++ SV+ AL+ G + G +
Sbjct: 786 QAKNLVPCLDASILLIPQLCRANRVEKAIALKDLSLREQSIDSFSVHSALMNGFCKTGRI 845
Query: 725 RQATLQFHQMIASEVSPDSNTLNVMIQVYRADNNSRRVGELLAFMVRNNLSLSISSYRDL 904
+A + F M ++ + PD N+++ Y N+ R+V EL+ M+R +L SIS YR++
Sbjct: 846 GEAAILFQDMFSNGLLPDIEICNMLVFGYCQANSVRKVTELIGVMIRKDLGFSISVYRNV 905
Score = 62.8 bits (151), Expect = 1e-07
Identities = 48/206 (23%), Positives = 85/206 (41%)
Frame = +2
Query: 287 CQQGMLQEALQLFENMLVASLHSFSDISNIFSEVLSGSGHAHFAVVFLDEVVRQRELLSD 466
C++ EA +FE+M +L D S + L + A+ D +R++ + S
Sbjct: 770 CKEKRFSEAFTIFESMQAKNLVPCLDASILLIPQLCRANRVEKAIALKDLSLREQSIDSF 829
Query: 467 SAYSHIVSGLCKEKGFQEAFDVLDAMLEKNIAPCVDVCCQLIPQLCRLHRWEKAVVLKEI 646
S +S +++G CK EA + M + P +++C L+ C+ + K L +
Sbjct: 830 SVHSALMNGFCKTGRIGEAAILFQDMFSNGLLPDIEICNMLVFGYCQANSVRKVTELIGV 889
Query: 647 VSKKDPASCLSVYYALICGLYRGGMVRQATLQFHQMIASEVSPDSNTLNVMIQVYRADNN 826
+ +KD +SVY ++ L GMV M+ P N++I N
Sbjct: 890 MIRKDLGFSISVYRNVVRLLCMNGMVLPLLRMKELMLRENNFPHLIVYNILIYHLFQTGN 949
Query: 827 SRRVGELLAFMVRNNLSLSISSYRDL 904
S V +L + + L +Y L
Sbjct: 950 SLLVKVILGELHKKGLLFDEVTYNFL 975
Score = 61.2 bits (147), Expect = 3e-07
Identities = 47/204 (23%), Positives = 84/204 (41%)
Frame = +2
Query: 248 PCLKDCKALWDCLCQQGMLQEALQLFENMLVASLHSFSDISNIFSEVLSGSGHAHFAVVF 427
P ++ +A+ CLC GML++AL+L M + S N L G A F
Sbjct: 1002 PSSRNLRAVISCLCDSGMLRKALELSREMELRGWIHGSIAQNAIVGCLLSHGKLKEAESF 1061
Query: 428 LDEVVRQRELLSDSAYSHIVSGLCKEKGFQEAFDVLDAMLEKNIAPCVDVCCQLIPQLCR 607
LD +V + + + Y ++ C +A ++L+ ML+K P +I C
Sbjct: 1062 LDRMVEKGLIPDNINYESLIRQFCWHGRLNKAVELLNIMLKKGNLPNCSSYDSVIQGFCT 1121
Query: 608 LHRWEKAVVLKEIVSKKDPASCLSVYYALICGLYRGGMVRQATLQFHQMIASEVSPDSNT 787
++R ++A+ + + + + AL + G +A M+ +P
Sbjct: 1122 VNRLDEAMDFHTEMLDRKLRPSIKAWDALAHKFCQDGRTAEAESLLVSMVQMGETPTREM 1181
Query: 788 LNVMIQVYRADNNSRRVGELLAFM 859
+I R++NN + ELL M
Sbjct: 1182 YTSLINRLRSENNLSKASELLQAM 1205
>ref|XP_002278558.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like
[Vitis vinifera]
Length = 1273
Score = 228 bits (580), Expect = 2e-57
Identities = 120/300 (40%), Positives = 176/300 (58%)
Frame = +2
Query: 5 LFEEFPELAYQLDQETLNSVVRVISKREVAFKGMRVLAGMLHRSFSIDNETFTVXXXXXX 184
L E+ P+L Q+D+ETLN +V+ K+ KG +L GML R S+ +ET+
Sbjct: 623 LLEKMPKLVNQVDEETLNLLVQTHCKKGFIGKGKIILNGMLQRHLSVKSETYVALLAGLC 682
Query: 185 XXXXQKEIRKCWELALTHKWLPCLKDCKALWDCLCQQGMLQEALQLFENMLVASLHSFSD 364
+ IR CW+LA KWL LKDCK L CLCQQ L+EAL+L E+ML H D
Sbjct: 683 KKGNSRTIRCCWDLARRDKWLLELKDCKVLVGCLCQQKFLKEALELLESMLATYPHLRLD 742
Query: 365 ISNIFSEVLSGSGHAHFAVVFLDEVVRQRELLSDSAYSHIVSGLCKEKGFQEAFDVLDAM 544
+ N+F E L G A +DE ++Q +L +A+SH++SG CKEK F EAF + ++M
Sbjct: 743 VCNMFLEKLCVVGFTTIAHALVDEFLQQGCILDHTAHSHLISGFCKEKRFSEAFTIFESM 802
Query: 545 LEKNIAPCVDVCCQLIPQLCRLHRWEKAVVLKEIVSKKDPASCLSVYYALICGLYRGGMV 724
KN+ PC+D LIPQLCR +R EKA+ LK++ ++ SV+ AL+ G + G +
Sbjct: 803 QAKNLVPCLDASILLIPQLCRANRVEKAIALKDLSLREQSIDSFSVHSALMNGFCKTGRI 862
Query: 725 RQATLQFHQMIASEVSPDSNTLNVMIQVYRADNNSRRVGELLAFMVRNNLSLSISSYRDL 904
+A + F M ++ + PD N+++ Y N+ R+V EL+ M+R +L SIS YR++
Sbjct: 863 GEAAILFQDMFSNGLLPDIEICNMLVFGYCQANSVRKVTELIGVMIRKDLGFSISVYRNV 922
Score = 62.8 bits (151), Expect = 1e-07
Identities = 48/206 (23%), Positives = 85/206 (41%)
Frame = +2
Query: 287 CQQGMLQEALQLFENMLVASLHSFSDISNIFSEVLSGSGHAHFAVVFLDEVVRQRELLSD 466
C++ EA +FE+M +L D S + L + A+ D +R++ + S
Sbjct: 787 CKEKRFSEAFTIFESMQAKNLVPCLDASILLIPQLCRANRVEKAIALKDLSLREQSIDSF 846
Query: 467 SAYSHIVSGLCKEKGFQEAFDVLDAMLEKNIAPCVDVCCQLIPQLCRLHRWEKAVVLKEI 646
S +S +++G CK EA + M + P +++C L+ C+ + K L +
Sbjct: 847 SVHSALMNGFCKTGRIGEAAILFQDMFSNGLLPDIEICNMLVFGYCQANSVRKVTELIGV 906
Query: 647 VSKKDPASCLSVYYALICGLYRGGMVRQATLQFHQMIASEVSPDSNTLNVMIQVYRADNN 826
+ +KD +SVY ++ L GMV M+ P N++I N
Sbjct: 907 MIRKDLGFSISVYRNVVRLLCMNGMVLPLLRMKELMLRENNFPHLIVYNILIYHLFQTGN 966
Query: 827 SRRVGELLAFMVRNNLSLSISSYRDL 904
S V +L + + L +Y L
Sbjct: 967 SLLVKVILGELHKKGLLFDEVTYNFL 992
Score = 61.2 bits (147), Expect = 3e-07
Identities = 47/204 (23%), Positives = 84/204 (41%)
Frame = +2
Query: 248 PCLKDCKALWDCLCQQGMLQEALQLFENMLVASLHSFSDISNIFSEVLSGSGHAHFAVVF 427
P ++ +A+ CLC GML++AL+L M + S N L G A F
Sbjct: 1019 PSSRNLRAVISCLCDSGMLRKALELSREMELRGWIHGSIAQNAIVGCLLSHGKLKEAESF 1078
Query: 428 LDEVVRQRELLSDSAYSHIVSGLCKEKGFQEAFDVLDAMLEKNIAPCVDVCCQLIPQLCR 607
LD +V + + + Y ++ C +A ++L+ ML+K P +I C
Sbjct: 1079 LDRMVEKGLIPDNINYESLIRQFCWHGRLNKAVELLNIMLKKGNLPNCSSYDSVIQGFCT 1138
Query: 608 LHRWEKAVVLKEIVSKKDPASCLSVYYALICGLYRGGMVRQATLQFHQMIASEVSPDSNT 787
++R ++A+ + + + + AL + G +A M+ +P
Sbjct: 1139 VNRLDEAMDFHTEMLDRKLRPSIKAWDALAHKFCQDGRTAEAESLLVSMVQMGETPTREM 1198
Query: 788 LNVMIQVYRADNNSRRVGELLAFM 859
+I R++NN + ELL M
Sbjct: 1199 YTSLINRLRSENNLSKASELLQAM 1222
>ref|XP_003553062.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like
[Glycine max]
Length = 1186
Score = 224 bits (570), Expect = 3e-56
Identities = 121/300 (40%), Positives = 182/300 (60%)
Frame = +2
Query: 5 LFEEFPELAYQLDQETLNSVVRVISKREVAFKGMRVLAGMLHRSFSIDNETFTVXXXXXX 184
L E+ P+ A++LD ETLN VV+ SK+ + FK +L GML F + NET+T
Sbjct: 540 LLEQMPKSAHKLDPETLNLVVQAYSKKGLLFKAKIILDGMLQNEFHVKNETYTAILMPLC 599
Query: 185 XXXXQKEIRKCWELALTHKWLPCLKDCKALWDCLCQQGMLQEALQLFENMLVASLHSFSD 364
K+ W++A +KWLP L+D K L +C ML+EA Q E ML++ + SD
Sbjct: 600 KKGNMKDFSYYWDVACRNKWLPSLEDFKCLLVHICHWKMLKEASQFLEIMLLSYPYLKSD 659
Query: 365 ISNIFSEVLSGSGHAHFAVVFLDEVVRQRELLSDSAYSHIVSGLCKEKGFQEAFDVLDAM 544
I ++F EVLS +G A A+V L ++ + L + Y+H++ GLC E F AF VLD M
Sbjct: 660 ICHVFLEVLSSTGLADTALVVLKQL-QPCFNLDHTDYNHLIRGLCNEGKFSLAFTVLDDM 718
Query: 545 LEKNIAPCVDVCCQLIPQLCRLHRWEKAVVLKEIVSKKDPASCLSVYYALICGLYRGGMV 724
L++++APC+DV LIPQLC+ HR++KA+ LK+I+ K+ P+ + ALICG G
Sbjct: 719 LDRSLAPCLDVSVLLIPQLCKAHRYDKAIALKDIILKEQPSFSHAADCALICGFCNMGST 778
Query: 725 RQATLQFHQMIASEVSPDSNTLNVMIQVYRADNNSRRVGELLAFMVRNNLSLSISSYRDL 904
+A F M++ ++PD N++IQ + N+ R+VGELL F +R + LS++SY++L
Sbjct: 779 GKADTLFRDMLSKGLTPDDELCNIIIQGHCHVNDLRKVGELLGFAIRKDWELSLTSYKNL 838
>ref|XP_002533116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527079|gb|EEF29261.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1204
Score = 196 bits (498), Expect = 6e-48
Identities = 106/300 (35%), Positives = 172/300 (57%)
Frame = +2
Query: 5 LFEEFPELAYQLDQETLNSVVRVISKREVAFKGMRVLAGMLHRSFSIDNETFTVXXXXXX 184
L E+ P+LA QLD E LN +V+ K + + G + ML + I+N T+T
Sbjct: 544 LIEKMPKLANQLDDEVLNLLVQACCKSGLMYHGRLIFHQMLLKDVIIENGTYTALIVGLC 603
Query: 185 XXXXQKEIRKCWELALTHKWLPCLKDCKALWDCLCQQGMLQEALQLFENMLVASLHSFSD 364
+ +R CW++A KWLP LKDCK+L CLC M++ ++L E+M+V H ++
Sbjct: 604 KRGDLQAVRDCWDIAQNSKWLPELKDCKSLVGCLCYHRMVKGVIELLESMMVFYPHLRAE 663
Query: 365 ISNIFSEVLSGSGHAHFAVVFLDEVVRQRELLSDSAYSHIVSGLCKEKGFQEAFDVLDAM 544
I ++F E LS +G A +DE+++Q + + YS+++ GLCKE+ + A + +
Sbjct: 664 IFHMFLEELSITGFTSIAHKLVDELLQQGCVFDNVVYSYLLRGLCKERKYIAASTMAGEV 723
Query: 545 LEKNIAPCVDVCCQLIPQLCRLHRWEKAVVLKEIVSKKDPASCLSVYYALICGLYRGGMV 724
L +N+ PC+DV LIPQLC+ R + A+ L++I ++ S LSV AL+ G + G +
Sbjct: 724 LARNLVPCLDVSVILIPQLCKADRLDIAIALRDISLREQSVSQLSVDCALVKGFCKTGKI 783
Query: 725 RQATLQFHQMIASEVSPDSNTLNVMIQVYRADNNSRRVGELLAFMVRNNLSLSISSYRDL 904
+A M+ + PD+ N++ Q Y NN ++V ELL+ ++R LS S+SSY++L
Sbjct: 784 GEAANMLQNMLLKGLLPDAEIYNMLFQGYCQANNWKKVRELLSVLIRKFLSPSVSSYQNL 843
>ref|XP_002323869.1| predicted protein [Populus trichocarpa] gi|222866871|gb|EEF04002.1|
predicted protein [Populus trichocarpa]
Length = 1158
Score = 196 bits (498), Expect = 6e-48
Identities = 111/298 (37%), Positives = 171/298 (57%)
Frame = +2
Query: 5 LFEEFPELAYQLDQETLNSVVRVISKREVAFKGMRVLAGMLHRSFSIDNETFTVXXXXXX 184
L E+ P+L QLDQE LN +V+ K + KG + ML R+ +I++ETFT
Sbjct: 508 LLEKMPKLVNQLDQEVLNLLVQAYCKIGLTHKGWLIFNQMLQRNLTINSETFTALIKGLC 567
Query: 185 XXXXQKEIRKCWELALTHKWLPCLKDCKALWDCLCQQGMLQEALQLFENMLVASLHSFSD 364
+ + CW+ AL KWLP L DC ++ +CLC GML+E L+L E MLV + S
Sbjct: 568 KKENLRNLHDCWDFALNGKWLPGLVDCISVVECLCHCGMLKEVLELLERMLVLNPESRLK 627
Query: 365 ISNIFSEVLSGSGHAHFAVVFLDEVVRQRELLSDSAYSHIVSGLCKEKGFQEAFDVLDAM 544
+ +IF E LS +G + A +F++E+++ L AYSH++ GLCKE+ ++ AF VLD M
Sbjct: 628 VLHIFLEKLSLTGFSSIAHLFVEELLQHGCALDQIAYSHLIKGLCKEQKYKVAFAVLDIM 687
Query: 545 LEKNIAPCVDVCCQLIPQLCRLHRWEKAVVLKEIVSKKDPASCLSVYYALICGLYRGGMV 724
L + + PC+DV LIPQLC+ + + A+ L E V + + S + C + G
Sbjct: 688 LARKMVPCLDVSLILIPQLCKADKLQTAIELMENVLRV-RTTFHSDFTKRFCVTGKAG-- 744
Query: 725 RQATLQFHQMIASEVSPDSNTLNVMIQVYRADNNSRRVGELLAFMVRNNLSLSISSYR 898
+A F M++ + PD++ N+++Q + N ++V ELL ++R SL+ISSYR
Sbjct: 745 -EAANIFQNMLSKGLLPDADIYNMLLQQFCHTKNLKKVRELLGVVIRKTASLTISSYR 801