BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00027342
         (1348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35029.3| unnamed protein product [Vitis vinifera]              327   4e-87
ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat...   327   4e-87
ref|XP_002517451.1| pentatricopeptide repeat-containing protein,...   313   6e-83
ref|XP_002877120.1| pentatricopeptide repeat-containing protein ...   295   2e-77
ref|NP_189507.2| pentatricopeptide repeat-containing protein [Ar...   290   6e-76

>emb|CBI35029.3| unnamed protein product [Vitis vinifera]
          Length = 1596

 Score =  327 bits (838), Expect = 4e-87
 Identities = 157/243 (64%), Positives = 191/243 (78%)
 Frame = -2

Query: 1347 ALVDMYAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLR 1168
            ALVDMYAKCGCID++VEVF  M KRN FSW+AMIGGFALHG  ++A+ CL+RM +EDGLR
Sbjct: 248  ALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLR 307

Query: 1167 PDGVVLLAVLTACTHAGCEEEGWLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALE 988
            PDGVVLL V+ AC HAG +EEG  LL NM+A YGI+PKHEHYSC VDLLCRAG+L+EAL+
Sbjct: 308  PDGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALK 367

Query: 987  LIQTMPMRPLASVWGSLLSACKTHGNXXXXXXXXXXXLQIEHDSGAQEDGAYVQLSNIYL 808
            LI+ MPM+P A+VWG+LLS C+TH N           L + +  G +EDGAYVQLSNIYL
Sbjct: 368  LIRRMPMKPRAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYL 427

Query: 807  NAQRCSDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSL 628
             AQ+C DA RIR M+ DK IK  PGCS+IEV G+VN+FV+GD+ HP   +IH +LDL+SL
Sbjct: 428  AAQKCEDACRIRRMIGDKRIKTKPGCSLIEVEGEVNQFVSGDISHPCLAQIHEMLDLVSL 487

Query: 627  RIS 619
            + S
Sbjct: 488  QHS 490


>ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g28640-like [Vitis vinifera]
          Length = 511

 Score =  327 bits (838), Expect = 4e-87
 Identities = 157/243 (64%), Positives = 191/243 (78%)
 Frame = -2

Query: 1347 ALVDMYAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLR 1168
            ALVDMYAKCGCID++VEVF  M KRN FSW+AMIGGFALHG  ++A+ CL+RM +EDGLR
Sbjct: 248  ALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLR 307

Query: 1167 PDGVVLLAVLTACTHAGCEEEGWLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALE 988
            PDGVVLL V+ AC HAG +EEG  LL NM+A YGI+PKHEHYSC VDLLCRAG+L+EAL+
Sbjct: 308  PDGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALK 367

Query: 987  LIQTMPMRPLASVWGSLLSACKTHGNXXXXXXXXXXXLQIEHDSGAQEDGAYVQLSNIYL 808
            LI+ MPM+P A+VWG+LLS C+TH N           L + +  G +EDGAYVQLSNIYL
Sbjct: 368  LIRRMPMKPRAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYL 427

Query: 807  NAQRCSDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSL 628
             AQ+C DA RIR M+ DK IK  PGCS+IEV G+VN+FV+GD+ HP   +IH +LDL+SL
Sbjct: 428  AAQKCEDACRIRRMIGDKRIKTKPGCSLIEVEGEVNQFVSGDISHPCLAQIHEMLDLVSL 487

Query: 627  RIS 619
            + S
Sbjct: 488  QHS 490


>ref|XP_002517451.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223543462|gb|EEF44993.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 428

 Score =  313 bits (802), Expect = 6e-83
 Identities = 154/238 (64%), Positives = 189/238 (79%)
 Frame = -2

Query: 1347 ALVDMYAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLR 1168
            ALVDMYAKCG I+ AV+VF  M KR+ FSWAAMIGG+A+HG+A+EAIH L+RM  EDGLR
Sbjct: 170  ALVDMYAKCGWINMAVQVFEEMPKRSAFSWAAMIGGYAIHGYAREAIHYLERMHAEDGLR 229

Query: 1167 PDGVVLLAVLTACTHAGCEEEGWLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALE 988
            PDGVVLL VLTACTHAG +EEG  LL NMKA YGIVP+HEHYSC VDLLCRAGR +EAL 
Sbjct: 230  PDGVVLLGVLTACTHAGLQEEGRFLLDNMKARYGIVPRHEHYSCVVDLLCRAGRWDEALA 289

Query: 987  LIQTMPMRPLASVWGSLLSACKTHGNXXXXXXXXXXXLQIEHDSGAQEDGAYVQLSNIYL 808
            LI+ MPM+PLASVWG++LS+C+TH N           LQ+E+ +G +ED A+VQL NIYL
Sbjct: 290  LIKRMPMKPLASVWGAVLSSCRTHKNAELAEFAVQELLQLENGNGNEEDAAFVQLWNIYL 349

Query: 807  NAQRCSDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLL 634
            +  R  DA +I  ++ ++G+KKTPGCS+IEVNG VNEFV+GDV +    ++HAIL+LL
Sbjct: 350  STGRGEDASKIHRLIGERGLKKTPGCSMIEVNGMVNEFVSGDVSNKDVAQMHAILELL 407


>ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297322958|gb|EFH53379.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 399

 Score =  295 bits (754), Expect = 2e-77
 Identities = 139/240 (57%), Positives = 183/240 (76%)
 Frame = -2

Query: 1347 ALVDMYAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLR 1168
            ALVDMYAKCGCI+ AVEVF ++ +RN FSWAA+IGG+A +G+AK+A+ CLDRM  EDG++
Sbjct: 154  ALVDMYAKCGCIEMAVEVFEKLSRRNVFSWAALIGGYAAYGYAKKAMTCLDRMEREDGIK 213

Query: 1167 PDGVVLLAVLTACTHAGCEEEGWLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALE 988
            PD VVLL VL AC H G  +EG  +L NM+A YGI PKHEHYSC VDL+CRAGRL++AL+
Sbjct: 214  PDSVVLLGVLAACAHGGFLQEGRAMLGNMEARYGITPKHEHYSCIVDLMCRAGRLDDALD 273

Query: 987  LIQTMPMRPLASVWGSLLSACKTHGNXXXXXXXXXXXLQIEHDSGAQEDGAYVQLSNIYL 808
            LI+ MPM+PLASVWG+LL+ C+TH N           L +E  +  +E+ A VQLSNIY 
Sbjct: 274  LIEKMPMKPLASVWGALLNGCRTHKNVELGELAVKNLLDLEKGNAEEEEAALVQLSNIYF 333

Query: 807  NAQRCSDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSL 628
            + QR  +A ++R M++ +GI+KTPG SV+EV+G V +FV+GDV HP  L+IH ++ LLS+
Sbjct: 334  SVQRNPEASKVRGMIEQRGIRKTPGWSVLEVDGNVTKFVSGDVSHPNLLQIHTVIHLLSV 393


>ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g28660 gi|9294280|dbj|BAB02182.1| unnamed protein
            product [Arabidopsis thaliana] gi|20259531|gb|AAM13885.1|
            unknown protein [Arabidopsis thaliana]
            gi|24030460|gb|AAN41382.1| unknown protein [Arabidopsis
            thaliana] gi|332643950|gb|AEE77471.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  290 bits (742), Expect = 6e-76
 Identities = 140/246 (56%), Positives = 184/246 (74%)
 Frame = -2

Query: 1347 ALVDMYAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLR 1168
            ALVDMYAKCGCI+ AVEVF ++ +RN FSWAA+IGG+A +G+AK+A  CLDR+  EDG++
Sbjct: 259  ALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIK 318

Query: 1167 PDGVVLLAVLTACTHAGCEEEGWLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALE 988
            PD VVLL VL AC H G  EEG  +L NM+A YGI PKHEHYSC VDL+CRAGRL++AL+
Sbjct: 319  PDSVVLLGVLAACAHGGFLEEGRTMLENMEARYGITPKHEHYSCIVDLMCRAGRLDDALD 378

Query: 987  LIQTMPMRPLASVWGSLLSACKTHGNXXXXXXXXXXXLQIEHDSGAQEDGAYVQLSNIYL 808
            LI+ MPM+PLASVWG+LL+ C+TH N           L +E  +  +E+ A VQLSNIY 
Sbjct: 379  LIEKMPMKPLASVWGALLNGCRTHKNVELGELAVQNLLDLEKGNVEEEEAALVQLSNIYF 438

Query: 807  NAQRCSDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSL 628
            + QR  +A ++R M++ +GI+KTPG S++EV+G V +FV+GDV HP  L+IH ++ LLS+
Sbjct: 439  SVQRNPEAFKVRGMIEQRGIRKTPGWSLLEVDGIVTKFVSGDVSHPNLLQIHTLIHLLSV 498

Query: 627  RISDHL 610
              S  L
Sbjct: 499  DASQIL 504