BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00024229
         (1325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328150.1| predicted protein [Populus trichocarpa] gi|2...   293   7e-77
ref|XP_003537572.1| PREDICTED: pentatricopeptide repeat-containi...   292   2e-76
ref|XP_002514391.1| pentatricopeptide repeat-containing protein,...   291   3e-76
emb|CAN78573.1| hypothetical protein VITISV_020581 [Vitis vinifera]   290   6e-76
ref|XP_003516576.1| PREDICTED: pentatricopeptide repeat-containi...   288   2e-75

>ref|XP_002328150.1| predicted protein [Populus trichocarpa] gi|222837665|gb|EEE76030.1|
            predicted protein [Populus trichocarpa]
          Length = 347

 Score =  293 bits (750), Expect = 7e-77
 Identities = 167/345 (48%), Positives = 204/345 (59%), Gaps = 11/345 (3%)
 Frame = +2

Query: 62   NSSSRRLYSNLPRDFTTILRNYISRAGTETNQSSLPNVEGDRRIQRTRRDGAGSPPNPIP 241
            +S SR   S + R F++ ++   + AG   +       E +RR+Q        +PP PIP
Sbjct: 15   HSHSRISLSQILRRFSSSIKGSTAGAGFNFDD------EKERRLQNQ------NPPEPIP 62

Query: 242  NRPLRGXXXXXXXXXXXXXXXXXXXXT--------EAQRNHPKLDLGSDD---DTPLVHT 388
            NRPLRG                             + Q      +  SDD   D   +H 
Sbjct: 63   NRPLRGPKPNFNNNTNRPARPQPSHHPSTTSPFNLQPQTQTHDFNRISDDAFLDKFKLHP 122

Query: 389  NPAGESXXXXXXXXXXXXXXXPTTNNSGCEPEEASSPPQDSDEIFKKMKETGLIPNAVAM 568
            +                    P   N        S P QD+++IF KMKETGLIPNAVAM
Sbjct: 123  DHNNNVNKDAAAADTKAAAAPPPPKNEQASSASTSEPSQDAEQIFNKMKETGLIPNAVAM 182

Query: 569  LDGLCKDGLVQDAMKLFGLMRDKGTIPEVVIYTAVVDGFSKAHKFDDAKRIFRKMQTNGI 748
            LDGLCKDGLVQ+A+KLFG MR+KGTIPEVVIYTAVVDGF KAHK DDAKRIFRKMQ+NGI
Sbjct: 183  LDGLCKDGLVQEALKLFGTMREKGTIPEVVIYTAVVDGFCKAHKLDDAKRIFRKMQSNGI 242

Query: 749  PPNAFSYTILIQGLCRGRNLEDAADFCVEMLEAGHLPNVSTFTTLIDGFCKDKGVQEAES 928
             PNAFSY +LIQGL +    +DA DFC EMLE GH PNV+TF  LIDG C++KGV+EA +
Sbjct: 243  TPNAFSYAVLIQGLSKCNLFDDAIDFCFEMLELGHSPNVTTFVGLIDGLCREKGVEEART 302

Query: 929  TVRRLREKGFFVNDKSVREHLDKNGPFSPLLWEAIFGKKISQKLF 1063
             +  LR+KGF V+DK+VR+ LDKN P S  +W+AIFGKK S K F
Sbjct: 303  VIGTLRQKGFHVHDKAVRDFLDKNKPLSSSVWDAIFGKKPSHKPF 347


>ref|XP_003537572.1| PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like
            [Glycine max]
          Length = 388

 Score =  292 bits (747), Expect = 2e-76
 Identities = 138/190 (72%), Positives = 165/190 (86%)
 Frame = +2

Query: 494  SPPQDSDEIFKKMKETGLIPNAVAMLDGLCKDGLVQDAMKLFGLMRDKGTIPEVVIYTAV 673
            S PQD+DEIFKKMKETGLIPNAVAMLDGLCKDGLVQ+A+KLFGLMR+KGTIPE+VIYTAV
Sbjct: 199  SMPQDADEIFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLMREKGTIPEIVIYTAV 258

Query: 674  VDGFSKAHKFDDAKRIFRKMQTNGIPPNAFSYTILIQGLCRGRNLEDAADFCVEMLEAGH 853
            V+G++KAHK DDAKRIFRKMQ++G+ PNAFSY +LIQGL +   L DA +FCVEMLEAGH
Sbjct: 259  VEGYTKAHKADDAKRIFRKMQSSGVSPNAFSYMVLIQGLYKCSRLHDAFEFCVEMLEAGH 318

Query: 854  LPNVSTFTTLIDGFCKDKGVQEAESTVRRLREKGFFVNDKSVREHLDKNGPFSPLLWEAI 1033
             PNV+TF  L+DGFC +KGV+EA+S ++ L +KGF VN+K+VR+ LDK  PFSP +WEAI
Sbjct: 319  SPNVTTFVGLVDGFCNEKGVEEAKSAIKTLTDKGFVVNEKAVRQFLDKKAPFSPSVWEAI 378

Query: 1034 FGKKISQKLF 1063
            FGKK  Q+ F
Sbjct: 379  FGKKAPQRPF 388


>ref|XP_002514391.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223546488|gb|EEF47987.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 313

 Score =  291 bits (744), Expect = 3e-76
 Identities = 157/305 (51%), Positives = 190/305 (62%), Gaps = 3/305 (0%)
 Frame = +2

Query: 158  SSLPNVEGDRRIQRTRRDGAG---SPPNPIPNRPLRGXXXXXXXXXXXXXXXXXXXXTEA 328
            SS+    G   +   R D +    SPP+PIPNRPLRG                       
Sbjct: 23   SSIRETRGSFSLNGERDDASNVDNSPPHPIPNRPLRGQTSFNQSQSQSPRIP-------- 74

Query: 329  QRNHPKLDLGSDDDTPLVHTNPAGESXXXXXXXXXXXXXXXPTTNNSGCEPEEASSPPQD 508
            +RN  +  L SDD       N                     T+ +          PP D
Sbjct: 75   RRNTNQNHLSSDDFLEKFKLNKRNHKDEIPHQINNH------TSKDENINKSSPPPPPPD 128

Query: 509  SDEIFKKMKETGLIPNAVAMLDGLCKDGLVQDAMKLFGLMRDKGTIPEVVIYTAVVDGFS 688
            +++IF KMKETGLIPNAVAMLDGLCKDGLVQ+AMKLFGLMR KGTIPEVV+YTAVVDGF 
Sbjct: 129  ANDIFNKMKETGLIPNAVAMLDGLCKDGLVQEAMKLFGLMRQKGTIPEVVVYTAVVDGFC 188

Query: 689  KAHKFDDAKRIFRKMQTNGIPPNAFSYTILIQGLCRGRNLEDAADFCVEMLEAGHLPNVS 868
            KAHK DDAKRIF+KM  NGI PNAFSYT+ IQGLC+   ++DA DFC +ML+AGH PNV+
Sbjct: 189  KAHKTDDAKRIFKKMIDNGITPNAFSYTVTIQGLCKCNAVDDAVDFCFQMLDAGHSPNVT 248

Query: 869  TFTTLIDGFCKDKGVQEAESTVRRLREKGFFVNDKSVREHLDKNGPFSPLLWEAIFGKKI 1048
            TF  L+DG C++KGV EA++ +  LR+KGF++N K++RE LDKN P S  L +AIFGKK 
Sbjct: 249  TFVGLVDGLCREKGVDEAQNVIEDLRKKGFYINGKAIREFLDKNAPLSSDLSQAIFGKKP 308

Query: 1049 SQKLF 1063
            SQ  F
Sbjct: 309  SQMPF 313


>emb|CAN78573.1| hypothetical protein VITISV_020581 [Vitis vinifera]
          Length = 381

 Score =  290 bits (742), Expect = 6e-76
 Identities = 155/293 (52%), Positives = 188/293 (64%), Gaps = 10/293 (3%)
 Frame = +2

Query: 215  AGSPPNPIPNRPLRGXXXXXXXXXXXXXXXXXXXXTEA----------QRNHPKLDLGSD 364
            + +PPNPIPNRPLRG                     E            +  P   +G+ 
Sbjct: 94   SSNPPNPIPNRPLRGEQRMNRPPPHIPQRKLGLPKDEGVDRASQASPFNQPSPAEKVGAT 153

Query: 365  DDTPLVHTNPAGESXXXXXXXXXXXXXXXPTTNNSGCEPEEASSPPQDSDEIFKKMKETG 544
             +   +     G                     N G E      PPQ++DEIF+KMKE+G
Sbjct: 154  LEDGFLERFKLGVQKKERPQESAAAQPSREQDANHGKE-----QPPQNADEIFRKMKESG 208

Query: 545  LIPNAVAMLDGLCKDGLVQDAMKLFGLMRDKGTIPEVVIYTAVVDGFSKAHKFDDAKRIF 724
            LIPNAVAMLDGLCKDGLVQ+AMKLFGLMR+KGTIPEVVIYTAVV+GF KA + DDA RIF
Sbjct: 209  LIPNAVAMLDGLCKDGLVQEAMKLFGLMREKGTIPEVVIYTAVVEGFCKARQLDDAVRIF 268

Query: 725  RKMQTNGIPPNAFSYTILIQGLCRGRNLEDAADFCVEMLEAGHLPNVSTFTTLIDGFCKD 904
            RKMQ NGI PNAFSYT+LI+G+ +G  L+ A DFCVEMLEAGH PNV+T   LI  FCK+
Sbjct: 269  RKMQNNGISPNAFSYTVLIRGMYKGNRLDIAVDFCVEMLEAGHSPNVATLVDLIHEFCKE 328

Query: 905  KGVQEAESTVRRLREKGFFVNDKSVREHLDKNGPFSPLLWEAIFGKKISQKLF 1063
            KGV+EA++ +  L++KG FV+DK+VRE+LDK GP SPL+WEA FGKK  Q+ F
Sbjct: 329  KGVEEAKNVIVTLKQKGLFVDDKAVREYLDKKGPQSPLVWEAFFGKKSPQRSF 381


>ref|XP_003516576.1| PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like
            [Glycine max]
          Length = 397

 Score =  288 bits (737), Expect = 2e-75
 Identities = 137/190 (72%), Positives = 164/190 (86%)
 Frame = +2

Query: 494  SPPQDSDEIFKKMKETGLIPNAVAMLDGLCKDGLVQDAMKLFGLMRDKGTIPEVVIYTAV 673
            S PQD++EIFKKMKETGLIPNAVAMLDGLCKDGLVQ+A+KLFGL+R+KGTIPE+VIYTAV
Sbjct: 208  SMPQDANEIFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLIREKGTIPEIVIYTAV 267

Query: 674  VDGFSKAHKFDDAKRIFRKMQTNGIPPNAFSYTILIQGLCRGRNLEDAADFCVEMLEAGH 853
            V+G++KAHK DDAKRIFRKMQ++GI PNAFSYT+LIQGL +   L DA +FCVEMLEAGH
Sbjct: 268  VEGYTKAHKADDAKRIFRKMQSSGISPNAFSYTVLIQGLYKCNRLHDAFEFCVEMLEAGH 327

Query: 854  LPNVSTFTTLIDGFCKDKGVQEAESTVRRLREKGFFVNDKSVREHLDKNGPFSPLLWEAI 1033
             PNV+ F  L+DGFC +KGV+EA+S ++ L EKGF VN+K+V + LDK  PFSP +WEAI
Sbjct: 328  SPNVTAFVGLVDGFCNEKGVEEAKSAIKTLTEKGFVVNEKAVGQFLDKKAPFSPSVWEAI 387

Query: 1034 FGKKISQKLF 1063
            FGKK  Q+ F
Sbjct: 388  FGKKAPQRPF 397