BLASTX nr result
ID: Coptis25_contig00022895
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00022895
(2140 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2... 322 2e-85
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 264 6e-68
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 261 4e-67
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 244 5e-62
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 242 3e-61
>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
predicted protein [Populus trichocarpa]
Length = 517
Score = 322 bits (826), Expect = 2e-85
Identities = 168/492 (34%), Positives = 268/492 (54%), Gaps = 3/492 (0%)
Frame = +2
Query: 554 SGLEVNIQKSQIFFAGMDDELCTRVKDIIQFLRGELLVKYLGLPLITTRLSYANCLPLVD 733
SGL N KS IF +G+ + ++ I+ F GEL +KYLG+PL+++RL C LVD
Sbjct: 19 SGLYPNPNKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLLSSRLKAIYCKGLVD 78
Query: 734 KVEKRIQSWKGKSLSYAGRLQLIKVVLNNMIIYWISSFVLPQSIIEEVQRIFRNFLWTRP 913
++ +++ W ++LSYAGR+QLI VL ++ +YW S F+LP +I+ V++I ++FLW+
Sbjct: 79 RITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIKNVEQIMKSFLWSGS 138
Query: 914 DCMTSHAFIGWRSLCYPYEE-GLAIRDVETINKAVNLKHIWNIISNKE-TLWVMWARKHI 1087
D T+ A + W +C P +E GL I+ ++ NK LKHIWN+ ++ + ++W W R ++
Sbjct: 139 DMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNL 198
Query: 1088 IKNKNFWEMKTPNDCSYSWRQIMKGRKDAEYIARYQVRDGKSIKLWTDPWHPAGVLKSYY 1267
++ +NFW +KTP +CS++W +I+K R A +Y + DG + LW D WHP L Y
Sbjct: 199 LRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSY 258
Query: 1268 SQTFAYNSVANKNAKLEKLMANGEWQISQTLRMHMPDIIQEMEDTVSIH-GGEDQAIWSV 1444
+ F Y+S KNAK+ L+ N EW+ T + II+ + + G +D+ +W
Sbjct: 259 GERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDELVWLD 318
Query: 1445 TVDGSFKLKETYHGIREKELKVTWSHLVWFKHKIPRHSFITWMLLKDGLKTLVKLKKQRV 1624
+ + F +K + +R V W +VWFK+ +PRHSF+ WM ++ L T KL + +
Sbjct: 319 SPNHRFSVKVAWEQLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGI 378
Query: 1625 VDSTTCVMCWHEEDTERHIFFECVFAQYTWTKVLRRAGYTRARLGSWEEELDWILETCRG 1804
C +C + H+FFEC + + W V R R G W+E + W + G
Sbjct: 379 HGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKG-WDEWIRWATVSWHG 437
Query: 1805 TGLKQDTLKMVTNAFFYGVWQEQNKRIFENEHKLAQQVVNQIINDAKTKLSSVTKKMEVG 1984
+ K+ A Y VWQE+N RIF + V+NQI + KL + + +
Sbjct: 438 KSFVNFSCKLSFAATVYHVWQERNARIFAGMSRTPNLVLNQIECIIRDKL-DLMRNVVPT 496
Query: 1985 QERERYMGLWNI 2020
E R W +
Sbjct: 497 NENTRIQRAWRV 508
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 264 bits (675), Expect = 6e-68
Identities = 152/493 (30%), Positives = 248/493 (50%), Gaps = 20/493 (4%)
Frame = +2
Query: 554 SGLEVNIQKSQIFFAGMDDELCTRVKDIIQFLRGELLVKYLGLPLITTRLSYANCLPLVD 733
SGL ++++KS ++ AG+ V D F G+L V+YLGLPLIT RLS +CLPL++
Sbjct: 732 SGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLE 791
Query: 734 KVEKRIQSWKGKSLSYAGRLQLIKVVLNNMIIYWISSFVLPQSIIEEVQRIFRNFLWTRP 913
+V KRI SW + LSYAGRL LI VL ++ +W+++F LP+ I E++++ FLW+
Sbjct: 792 QVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGT 851
Query: 914 DCMTSHAFIGWRSLCYPYEE-GLAIRDVETINKAVNLKHIWNIISNKETLWVMWARKHII 1090
+ ++ A I W +C P +E GL +R ++ N LK +W I+S+ +LWV W +H++
Sbjct: 852 EMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLL 911
Query: 1091 KNKNFWEMK-TPNDCSYSWRQIMKGRKDAEYIARYQVRDGKSIKLWTDPWHPAGVLKSYY 1267
+N +FWE+K T + S+ W++++K R+ A+ +++ +V +GK W D W G L
Sbjct: 912 RNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERT 971
Query: 1268 SQTFAYNSVANKNAKLEKLMANGEWQISQTLRMHMPDIIQEMEDTVSIHGG-----EDQA 1432
+ ++ +E+ N + R H D+ +ED + ED+
Sbjct: 972 GDRGLIDLGISRRMTVEEAWTN------RRQRRHRNDVYNVIEDALKKSWDTRTETEDKV 1025
Query: 1433 IWSVTVD---GSFKLKETYHGIREKELKVTWSHLVWFKHKIPRHSFITWMLLKDGLKTLV 1603
+W D +F ++T+H R +V W ++WF H P++SF +W+ L T
Sbjct: 1026 LWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGD 1085
Query: 1604 KLKKQRVVDSTTCVMCWHEEDTERHIFFECVFAQYTWTKVLR---RAGYT-------RAR 1753
++ +T C+ C +T H+FF C F W + R + YT A
Sbjct: 1086 RMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYTSHWQSIIEAI 1145
Query: 1754 LGSWEEELDWILETCRGTGLKQDTLKMVTNAFFYGVWQEQNKRIFENEHKLAQQVVNQII 1933
S ++W L + V A Y VW+E+N R A Q+V I
Sbjct: 1146 TNSQHHRVEWFLR------------RYVFQATIYIVWRERNGRRHGEPPNTASQLVGWID 1193
Query: 1934 NDAKTKLSSVTKK 1972
+ +LSS+ K
Sbjct: 1194 KQIRNQLSSICLK 1206
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 261 bits (668), Expect = 4e-67
Identities = 148/454 (32%), Positives = 239/454 (52%), Gaps = 11/454 (2%)
Frame = +2
Query: 554 SGLEVNIQKSQIFFAGMDDELCTRVKDIIQFLRGELLVKYLGLPLITTRLSYANCLPLVD 733
S L+++++KS IF AG+ T + F G L VKYLGLPL+T R++ ++ LPLV+
Sbjct: 879 SWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVE 938
Query: 734 KVEKRIQSWKGKSLSYAGRLQLIKVVLNNMIIYWISSFVLPQSIIEEVQRIFRNFLWTRP 913
K+ RI SW + LS+AGRLQLIK VL+++ +W+S F LP++ ++E++++F FLW+ P
Sbjct: 939 KIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGP 998
Query: 914 DCMTSHAFIGWRSLCYPYEE-GLAIRDVETINKAVNLKHIWNIISNKETLWVMWARKHII 1090
D T A I W +C EE GL ++ ++ N+ LK IW I+S +++LWV W KH+I
Sbjct: 999 DLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLI 1058
Query: 1091 KNKNFWEMKTPNDC-SYSWRQIMKGRKDAEYIARYQVRDGKSIKLWTDPWHPAGVLKSYY 1267
+ + FW +K S+ WR+I+K R A R +VR G W D W P G L +
Sbjct: 1059 RKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHM 1118
Query: 1268 SQTFAYNSVANKNAKLEKLMANGEWQISQTLRMHMPDIIQEMEDTVSIHGGE-----DQA 1432
+ NA + ++M + + H D + +++ + + + D++
Sbjct: 1119 GSRGTIDLGIPNNATVAEVMN------THRRKRHRADFLNQIKSQIELARQDRSTDGDRS 1172
Query: 1433 IWSV---TVDGSFKLKETYHGIREKELKVTWSHLVWFKHKIPRHSFITWMLLKDGLKTLV 1603
+W T SF +T+ IR L+ W VWF P++SF+TW+ + L T
Sbjct: 1173 LWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSD 1232
Query: 1604 KLKKQRVVDSTTCVMCWHEEDTERHIFFECVFAQYTWTKVLRRAGYTRAR-LGSWEEELD 1780
K+ K CV C E +T H+FF C ++ + W + + G R + +W
Sbjct: 1233 KICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVWFSLTK--GLLNGRNILNWNLITP 1290
Query: 1781 WILETCRGTGLKQDTLKMVTNAFFYGVWQEQNKR 1882
+L++ R L TL+ A + +W+E+N R
Sbjct: 1291 HLLDSSR-PYLHVFTLRYAFQASIHSLWRERNCR 1323
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 244 bits (624), Expect = 5e-62
Identities = 140/504 (27%), Positives = 258/504 (51%), Gaps = 11/504 (2%)
Frame = +2
Query: 557 GLEVNIQKSQIFFAGMDDELCTRVKDIIQFLRGELLVKYLGLPLITTRLSYANCLPLVDK 736
GL++ ++K+ ++ AG+ D + F G+L V+YLGLPL+T RL+ ++ PL+D+
Sbjct: 454 GLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQ 513
Query: 737 VEKRIQSWKGKSLSYAGRLQLIKVVLNNMIIYWISSFVLPQSIIEEVQRIFRNFLWTRPD 916
+ +RI W + LS+AGRL LI VL ++ +W+++F LP+ I E+ RI LW+ P+
Sbjct: 514 IRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPE 573
Query: 917 CMTSHAFIGWRSLCYPYEE-GLAIRDVETINKAVNLKHIWNIISNKETLWVMWARKHIIK 1093
A + W +C P +E GL ++ + NK +LK IW ++S +++LWV W R +++K
Sbjct: 574 LNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLK 633
Query: 1094 NKNFWEMKTPNDC-SYSWRQIMKGRKDAEYIARYQVRDGKSIKLWTDPWHPAGVLKSYYS 1270
++FW + T + S+ WR+++K R+ A+ + +V +G + W D W G L +
Sbjct: 634 KESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLINLTG 693
Query: 1271 QTFAYNSVANKNAKLEKLMANGEWQISQTLRMHMPDIIQEMEDTV---SIHGG---EDQA 1432
A + +++ L + + + + H +I+ E E+ + H ED
Sbjct: 694 ARGAIDMGISRHMTLAEAWSR------RRRKRHRVEILNEFEEILLQKYQHRNIELEDAI 747
Query: 1433 IWSVTVD---GSFKLKETYHGIREKELKVTWSHLVWFKHKIPRHSFITWMLLKDGLKTLV 1603
+W D F K+T++ IR + W VWF H P+ SF W+ +++ L T
Sbjct: 748 LWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGD 807
Query: 1604 KLKKQRVVDSTTCVMCWHEEDTERHIFFECVFAQYTWTKVLRRAGYTRARLGSWEEELDW 1783
++ TTCV C +T H+FF+C ++ WT + + Y W +++
Sbjct: 808 RMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNV-YKDRFSTKWSAVVNY 866
Query: 1784 ILETCRGTGLKQDTLKMVTNAFFYGVWQEQNKRIFENEHKLAQQVVNQIINDAKTKLSSV 1963
I ++ + ++ + + +W+E+N R + + A ++ QI + +LS++
Sbjct: 867 ISDS-QPDRIQSFLSRYTFQVSIHSIWRERNSRRHGEKSRSASNLIRQIDKTIRNQLSTI 925
Query: 1964 TKKMEVGQERERYMGLWNIFVDPI 2035
KK ++ E+ GL + +D I
Sbjct: 926 KKKGDLRLEK----GLQTLILDSI 945
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 242 bits (617), Expect = 3e-61
Identities = 135/476 (28%), Positives = 246/476 (51%), Gaps = 6/476 (1%)
Frame = +2
Query: 554 SGLEVNIQKSQIFFAGMDDELCTRVKDIIQFLRGELLVKYLGLPLITTRLSYANCLPLVD 733
SGL++N++K+ ++ AG+ D + F G+L V+YLGLPL+T RL+ + PL +
Sbjct: 137 SGLQINMEKTTLYTAGVSDHNRYMMISRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLFE 196
Query: 734 KVEKRIQSWKGKSLSYAGRLQLIKVVLNNMIIYWISSFVLPQSIIEEVQRIFRNFLWTRP 913
++ RI +W + LS+AGRL LI VL + + +W+S+F LP + ++E+ I FLW+ P
Sbjct: 197 QIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGP 256
Query: 914 DCMTSHAFIGWRSLCYPYEE-GLAIRDVETINKAVNLKHIWNIISNKETLWVMWARKHII 1090
+ A + W +C P +E GL +R + N LK IW + SN ++LWV W++ +++
Sbjct: 257 ELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLL 316
Query: 1091 KNKNFWEMKTPNDC--SYSWRQIMKGRKDAEYIARYQVRDGKSIKLWTDPWHPAGVLKSY 1264
K ++FW + TPN S+ W++++K R+ A+ +R +V +G W D W G L
Sbjct: 317 KQESFWSL-TPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMDV 375
Query: 1265 YSQTFAYNSVANKNAKLEKLMANGEWQISQTLRMHMPDIIQEMEDTVSIHGGEDQAIWSV 1444
Q + ++N + + +N + +T +++ + + ED +W
Sbjct: 376 TGQRGQIDLGISRNKTVAEAWSNRRRRKHRTEQLNDIEAALNQKYQTRNLLREDATLWRG 435
Query: 1445 TVD---GSFKLKETYHGIREKELKVTWSHLVWFKHKIPRHSFITWMLLKDGLKTLVKLKK 1615
D SF K+T++ +R+K +V W VWF H P++ F TW+ L++ L T +++
Sbjct: 436 KGDVFKTSFSTKDTWNQVRKKSNEVAWYKGVWFSHSTPKYQFCTWLALRNRLSTGYRMQL 495
Query: 1616 QRVVDSTTCVMCWHEEDTERHIFFECVFAQYTWTKVLRRAGYTRARLGSWEEELDWILET 1795
C C +T H+FF C +A WT + + R W+ +++I ET
Sbjct: 496 WNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWTAIAKNVLQHRFST-DWQTIVNYISET 554
Query: 1796 CRGTGLKQDTLKMVTNAFFYGVWQEQNKRIFENEHKLAQQVVNQIINDAKTKLSSV 1963
+ ++ + + + VW+E+N R E + + +++ + + +LS +
Sbjct: 555 -QTDRIRSFLSRYIFQLTVHTVWKERNDRRHGEEPRTSANLISWMDKQIRNQLSII 609