BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015820
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                122   4e-26
emb|CAN73604.1| hypothetical protein VITISV_027524 [Vitis vinifera]   101   8e-25
gb|AAR96234.1| putative polyprotein [Oryza sativa Japonica Group...   102   2e-24
gb|AAQ56293.1| putative gag-pol precursor [Oryza sativa Japonica...   102   2e-24
emb|CAE04522.2| OSJNBb0076A11.6 [Oryza sativa Japonica Group]         102   3e-24

>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  122 bits (305), Expect = 4e-26
 Identities = 54/113 (47%), Positives = 81/113 (71%)
 Frame = -1

Query: 396 ENRNVFVWTVEDVTGLDSEFACHHLHMKEDAKPVKQKMRNIRPKYAEGIREEVARLKGAE 217
           +N +VF WT  DV+G+D EF CHHL++  +A P KQ  R+   ++AE ++EEV +LK A 
Sbjct: 61  DNIDVFAWTTYDVSGIDPEFICHHLNVSHNAMPRKQPPRHASQEHAEAVKEEVNKLKQAG 120

Query: 216 IIREVEFTDWLSNIVAVPKKNENVRMCVDFTNVHLECLKDSYPMPRVNELVDA 58
            I+E+ + +WL+N V V KKN   R+CVDFT+++  C KD +P+PR+++LVDA
Sbjct: 121 AIKEIFYPEWLANTVVVKKKNGKWRVCVDFTDLNKACPKDPFPIPRIDQLVDA 173


>emb|CAN73604.1| hypothetical protein VITISV_027524 [Vitis vinifera]
          Length = 1250

 Score =  101 bits (252), Expect(2) = 8e-25
 Identities = 43/110 (39%), Positives = 73/110 (66%)
 Frame = -1

Query: 387  NVFVWTVEDVTGLDSEFACHHLHMKEDAKPVKQKMRNIRPKYAEGIREEVARLKGAEIIR 208
            +VF W+ ED+  LD     HHL +   A+PVKQK+R + P+++  ++EE+ +      + 
Sbjct: 816  DVFAWSYEDMXDLDPSIVQHHLPILPHARPVKQKLRRLHPRWSLQVKEEIRKQLNVGFLL 875

Query: 207  EVEFTDWLSNIVAVPKKNENVRMCVDFTNVHLECLKDSYPMPRVNELVDA 58
             VE+ +WL+N+V+VPKK+  VR+CVDF +++    KD +P+P ++ LVD+
Sbjct: 876  VVEYLEWLANVVSVPKKDGKVRVCVDFRDLNKASPKDDFPLPHIDMLVDS 925



 Score = 37.0 bits (84), Expect(2) = 8e-25
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = -2

Query: 68   WWMPFGLKNAGATFQRLGEKMF 3
            W MPFGLKNAGAT+QR    +F
Sbjct: 966  WVMPFGLKNAGATYQRAATTLF 987


>gb|AAR96234.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708469|gb|ABF96264.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2004

 Score =  102 bits (255), Expect(2) = 2e-24
 Identities = 45/109 (41%), Positives = 70/109 (64%)
 Frame = -1

Query: 393  NRNVFVWTVEDVTGLDSEFACHHLHMKEDAKPVKQKMRNIRPKYAEGIREEVARLKGAEI 214
            N+++F W   D+ G+  E   H LH+KEDAKP+KQ++R       + I+EE+ +L  A  
Sbjct: 975  NKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGF 1034

Query: 213  IREVEFTDWLSNIVAVPKKNENVRMCVDFTNVHLECLKDSYPMPRVNEL 67
            I+EV   DWL+N V V KK    RMCVD+T+++  C KD + +PR++++
Sbjct: 1035 IKEVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQI 1083



 Score = 34.7 bits (78), Expect(2) = 2e-24
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = -2

Query: 62   MPFGLKNAGATFQRLGEKMF 3
            MPFGLKNAGAT+QR+ ++ F
Sbjct: 1107 MPFGLKNAGATYQRMIQRCF 1126


>gb|AAQ56293.1| putative gag-pol precursor [Oryza sativa Japonica Group]
          Length = 1311

 Score =  102 bits (254), Expect(2) = 2e-24
 Identities = 46/108 (42%), Positives = 70/108 (64%)
 Frame = -1

Query: 393 NRNVFVWTVEDVTGLDSEFACHHLHMKEDAKPVKQKMRNIRPKYAEGIREEVARLKGAEI 214
           N+++F W   D+ G+  E   H LH+KEDAKPVKQ++R       + I+EE+ +L  A  
Sbjct: 504 NKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPVKQRLRRFAQDRKDAIKEELTKLLTAGF 563

Query: 213 IREVEFTDWLSNIVAVPKKNENVRMCVDFTNVHLECLKDSYPMPRVNE 70
           I+EV   DWL+N+V V KK    RMCVD+T+++  C KD + +PR+++
Sbjct: 564 IKEVLHPDWLANLVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQ 611



 Score = 34.7 bits (78), Expect(2) = 2e-24
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = -2

Query: 62  MPFGLKNAGATFQRLGEKMF 3
           MPFGLKNAGAT+QR+ ++ F
Sbjct: 626 MPFGLKNAGATYQRMIQRCF 645


>emb|CAE04522.2| OSJNBb0076A11.6 [Oryza sativa Japonica Group]
          Length = 1453

 Score =  102 bits (253), Expect(2) = 3e-24
 Identities = 44/109 (40%), Positives = 71/109 (65%)
 Frame = -1

Query: 393 NRNVFVWTVEDVTGLDSEFACHHLHMKEDAKPVKQKMRNIRPKYAEGIREEVARLKGAEI 214
           N+++F W   D+ G+  E   H LH+KEDAKP+K+++R       + I+EE+ +L  A+ 
Sbjct: 521 NKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKERLRRFAQDRKDAIKEELTKLLAADF 580

Query: 213 IREVEFTDWLSNIVAVPKKNENVRMCVDFTNVHLECLKDSYPMPRVNEL 67
           I+EV   DWL+N V V KK    RMCVD+T+++  C KD + +PR++++
Sbjct: 581 IKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQI 629



 Score = 34.7 bits (78), Expect(2) = 3e-24
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = -2

Query: 62  MPFGLKNAGATFQRLGEKMF 3
           MPFGLKNAGAT+QR+ ++ F
Sbjct: 653 MPFGLKNAGATYQRMIQRCF 672